Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 0.0e+00 1543.1 851 100.0
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 0.0e+00 1173.7 851 74.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 0.0e+00 1130.9 851 73.1
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 0.0e+00 1098.2 851 71.1
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 0.0e+00 1092.4 851 70.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.1e-311 1071.2 853 69.2
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 9.8e-310 1066.6 852 69.2
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 5.1e-290 1001.1 851 68.7
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.3e-289 998.0 854 66.6
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.5e-286 989.6 865 65.5
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.3e-285 986.5 861 65.7
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 3.6e-280 968.4 864 62.2
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 6.9e-279 964.1 862 63.2
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.6e-278 962.2 862 63.2
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 2.3e-274 949.1 855 62.6
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 8.7e-274 947.2 855 61.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.1e-273 946.8 866 60.7
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.9e-273 946.0 862 63.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.3e-273 945.3 863 60.7
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.6e-272 943.0 863 62.0
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 6.2e-272 941.0 870 60.9
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.1e-271 938.7 864 61.9
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 9.0e-271 937.2 879 62.5
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 3.4e-270 935.3 866 61.7
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 7.6e-270 934.1 867 61.6
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 8.4e-269 930.6 859 60.2
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 2.4e-268 929.1 864 60.2
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.2e-268 928.3 864 61.2
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 4.2e-268 928.3 862 62.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 7.9e-267 924.1 864 60.8
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 2.3e-266 922.5 861 60.6
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 5.1e-266 921.4 858 60.1
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.1e-265 920.2 863 59.7
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 3.3e-265 918.7 857 60.2
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 8.1e-264 914.1 855 59.9
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 2.4e-263 912.5 862 60.1
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 6.9e-263 911.0 861 59.7
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 4.5e-262 908.3 863 59.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 4.5e-262 908.3 859 59.3
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 4.5e-262 908.3 862 61.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.5e-262 908.3 863 59.0
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.6e-262 907.5 857 59.2
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.2e-261 906.0 860 59.5
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.2e-261 906.0 857 59.5
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 2.9e-261 905.6 859 60.0
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 8.4e-261 904.0 861 59.6
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.1e-260 903.7 856 59.9
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.4e-260 903.3 860 59.3
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.4e-260 903.3 856 60.3
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.1e-259 899.4 863 59.4
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.6e-259 898.3 855 60.2
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.0e-258 897.1 858 59.7
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.0e-258 897.1 859 59.1
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.9e-258 895.2 858 60.4
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 5.1e-258 894.8 854 59.8
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 8.7e-258 894.0 857 58.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-257 893.6 866 58.8
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.3e-257 891.7 860 59.9
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 9.6e-257 890.6 865 59.4
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 4.8e-256 888.3 866 58.4
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.0e-253 880.6 855 59.3
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.2e-253 879.4 868 56.9
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.9e-251 870.9 863 58.3
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.4e-247 860.1 859 59.1
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.8e-247 859.8 864 57.9
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.6e-246 855.9 862 58.9
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.5e-245 851.3 863 56.5
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 8.8e-242 840.9 861 59.3
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.0e-241 839.7 854 56.7
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 3.7e-240 835.5 868 57.1
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.2e-238 830.5 953 52.0
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 3.9e-234 815.5 813 57.9
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 5.1e-234 815.1 859 58.7
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 6.7e-234 814.7 865 55.4
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.7e-233 810.8 855 55.2
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 8.5e-229 797.7 888 53.5
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.8e-226 790.0 850 53.9
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 5.7e-225 785.0 844 52.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 5.7e-225 785.0 844 52.8
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.2e-224 783.1 844 53.1
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.6e-222 776.9 865 50.6
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.1e-220 770.8 840 51.7
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 9.4e-220 767.7 858 52.1
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.2e-219 767.3 846 53.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.2e-219 767.3 846 53.1
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.2e-219 767.3 878 51.3
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 4.7e-219 765.4 865 51.7
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.0e-218 764.2 861 51.1
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.0e-218 762.7 871 50.7
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.0e-217 760.0 876 50.7
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.7e-214 749.6 863 51.9
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 7.7e-214 748.0 866 50.2
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 9.8e-209 731.1 601 69.4
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 7.7e-206 721.5 863 51.3
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 7.7e-206 721.5 872 48.6
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 5.7e-201 705.3 712 54.8
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 5.9e-198 695.3 687 57.5
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.0e-197 694.5 866 48.0
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.6e-195 687.2 857 49.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.6e-195 686.0 828 48.7
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 4.3e-188 662.5 634 56.8
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.0e-181 639.8 580 59.8
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.4e-170 603.6 612 60.3
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.6e-155 554.3 880 40.2
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 6.4e-152 542.3 470 63.2
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.4e-138 498.0 796 42.6
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 3.1e-138 496.9 842 42.0
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.5e-137 494.6 902 40.1
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 3.2e-127 460.3 398 63.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.6e-126 456.4 494 57.3
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.5e-111 406.4 393 57.8
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.2e-110 405.2 455 57.4
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-108 398.7 293 69.3
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.1e-106 390.6 959 31.7
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.1e-102 376.3 416 53.1
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 3.7e-99 367.1 287 66.9
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.1e-87 328.9 328 58.8
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.9e-80 304.3 456 42.5
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 3.3e-79 300.8 191 76.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.2e-78 298.9 331 51.1
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.7e-75 288.5 260 59.6
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.4e-74 285.4 256 59.8
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.5e-71 274.6 227 62.6
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.6e-70 270.8 290 59.7
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.9e-66 258.5 235 60.9
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 4.1e-58 230.7 154 76.6
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 4.3e-55 220.7 273 53.5
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 5.6e-55 220.3 950 27.9
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 5.2e-53 213.8 217 54.8
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.8e-53 213.4 154 74.0
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.9e-43 181.4 214 48.1
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.1e-41 175.3 203 49.8
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.9e-40 171.0 176 56.8
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 3.9e-40 171.0 158 59.5
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.8e-36 157.1 148 61.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 5.6e-31 140.6 563 26.1
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.6e-30 139.0 192 45.8
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.1e-30 138.7 107 70.1
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 3.4e-28 131.3 277 39.0
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 4.5e-28 131.0 863 25.6
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.1e-26 126.3 78 74.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 4.2e-26 124.4 279 37.6
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 3.5e-25 121.3 286 36.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 6.7e-24 117.1 573 24.3
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 6.3e-22 110.5 104 55.8
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 6.9e-21 107.1 118 51.7
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.1e-17 94.0 59 76.3
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 6.7e-16 90.5 106 55.7
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.3e-15 88.2 120 48.3
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 3.7e-14 84.7 70 71.4
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.4e-13 82.8 73 67.1
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-12 79.7 50 74.0
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 7.7e-12 77.0 65 61.5
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 3.2e-10 71.6 55 58.2
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.5e-10 70.9 73 46.6
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 3.6e-09 68.2 70 51.4
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 8.8e-08 63.5 109 41.3
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 7.4e-07 60.5 89 47.2


User provided reference genes

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