Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 7.4e-183 643.7 308 100.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 2.5e-146 522.3 304 77.3
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 2.1e-145 519.2 306 76.1
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.8e-144 516.2 305 76.4
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.8e-144 516.2 304 76.3
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.8e-144 516.2 304 75.3
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 4.0e-144 515.0 303 77.9
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 8.9e-144 513.8 304 77.0
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 8.9e-144 513.8 304 75.7
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 8.9e-144 513.8 305 75.7
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 2.0e-143 512.7 305 76.1
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 2.6e-143 512.3 303 77.6
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 9.8e-143 510.4 304 76.0
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.7e-142 509.6 305 76.1
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.7e-142 509.6 304 75.3
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 4.9e-142 508.1 304 75.0
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 6.4e-142 507.7 301 75.1
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 6.4e-142 507.7 304 74.3
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.3e-142 507.3 304 75.0
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.1e-141 506.9 304 75.3
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.1e-141 506.9 304 74.7
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.4e-141 506.5 304 74.3
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 2.4e-141 505.8 306 74.8
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.4e-141 505.8 304 74.3
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.4e-141 505.8 300 75.0
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.1e-141 505.0 304 74.3
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 7.0e-141 504.2 304 75.0
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 7.0e-141 504.2 305 74.1
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.2e-140 503.4 305 74.4
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.2e-140 503.4 305 74.4
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 1.2e-140 503.4 305 74.4
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.6e-140 503.1 304 74.0
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.6e-140 503.1 303 73.6
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.7e-140 502.3 305 73.4
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.7e-140 502.3 300 75.0
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 2.7e-140 502.3 304 74.3
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.7e-140 502.3 304 74.3
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 3.5e-140 501.9 304 72.7
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 4.6e-140 501.5 304 73.7
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 6.0e-140 501.1 300 75.0
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 6.0e-140 501.1 305 73.4
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 6.0e-140 501.1 304 73.4
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 7.8e-140 500.7 304 73.0
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 7.8e-140 500.7 304 74.3
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.3e-139 500.0 304 74.3
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.3e-139 500.0 304 74.0
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.7e-139 499.6 303 74.3
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.7e-139 499.6 304 73.7
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.3e-139 499.2 303 74.3
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 2.3e-139 499.2 303 74.3
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 3.0e-139 498.8 303 74.6
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.9e-139 498.4 300 73.7
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 3.9e-139 498.4 303 73.9
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.6e-139 497.7 304 74.0
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 8.6e-139 497.3 304 73.7
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 8.6e-139 497.3 305 72.8
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-138 496.9 303 73.6
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.1e-138 496.9 303 73.6
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.5e-138 496.5 304 73.7
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 1.5e-138 496.5 304 73.7
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 2.5e-138 495.7 300 74.7
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.5e-138 495.7 304 73.4
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 3.3e-138 495.4 301 73.8
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 3.3e-138 495.4 301 73.8
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 3.3e-138 495.4 301 73.8
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 3.3e-138 495.4 301 73.8
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 3.3e-138 495.4 329 69.6
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 4.3e-138 495.0 301 73.4
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 4.3e-138 495.0 301 73.4
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 5.6e-138 494.6 303 72.3
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 7.3e-138 494.2 304 73.0
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 9.5e-138 493.8 300 72.7
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 9.5e-138 493.8 303 73.3
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 9.5e-138 493.8 303 73.3
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 9.5e-138 493.8 300 73.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.6e-137 493.0 303 72.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.1e-137 492.7 300 73.3
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 3.6e-137 491.9 300 73.3
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 4.7e-137 491.5 298 74.5
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 8.0e-137 490.7 301 73.4
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 1.1e-136 490.3 301 73.4
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.1e-136 490.3 301 72.4
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.4e-136 490.0 294 75.2
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.4e-136 490.0 301 73.1
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.8e-136 489.6 300 73.0
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.8e-136 489.6 304 71.4
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-136 489.2 299 72.6
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 2.3e-136 489.2 306 72.5
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 8.9e-136 487.3 323 69.0
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.2e-135 486.9 301 71.4
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.5e-135 486.5 304 70.4
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.6e-135 485.7 303 72.6
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 2.6e-135 485.7 304 71.1
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 5.8e-135 484.6 304 72.0
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 5.8e-135 484.6 309 71.8
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 9.8e-135 483.8 293 73.4
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.3e-134 483.4 303 71.0
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.7e-134 481.9 301 71.1
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 6.4e-134 481.1 301 70.8
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 6.4e-134 481.1 304 72.0
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 3.2e-133 478.8 302 72.2
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.2e-133 478.8 303 70.3
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 4.1e-133 478.4 303 70.6
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 4.6e-132 474.9 302 69.5
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 6.0e-132 474.6 322 67.4
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.8e-132 474.2 303 69.3
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 7.8e-132 474.2 305 68.5
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.0e-131 473.8 305 69.2
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.7e-131 473.0 303 69.0
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.0e-131 472.2 298 68.8
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 8.9e-128 460.7 305 69.8
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 9.9e-127 457.2 304 69.7
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.1e-125 453.8 273 75.1
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 2.3e-123 446.0 273 73.6
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 2.3e-123 446.0 300 69.3
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 9.5e-122 440.7 304 67.1
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 2.1e-121 439.5 302 64.6
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 6.2e-121 438.0 307 67.8
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 1.1e-120 437.2 273 73.6
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.4e-120 436.0 273 72.5
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.5e-119 433.3 301 66.1
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 3.4e-119 432.2 292 66.8
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.0e-115 419.1 304 61.5
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 3.6e-113 412.1 257 71.6
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 3.6e-113 412.1 257 71.6
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 6.2e-113 411.4 336 57.7
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 3.1e-112 409.1 250 72.8
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.0e-111 406.4 249 72.7
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.4e-111 405.6 297 60.6
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 4.4e-111 405.2 251 72.5
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 5.8e-111 404.8 273 70.0
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.3e-110 403.7 306 60.5
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 6.4e-110 401.4 278 66.2
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 5.4e-109 398.3 241 75.1
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 2.9e-102 375.9 303 57.1
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 4.9e-102 375.2 252 69.4
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 2.1e-97 359.8 298 57.7
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.4e-96 356.3 298 57.0
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 2.9e-94 349.4 253 67.2
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.5e-92 342.4 230 64.8
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.8e-91 340.1 232 68.1
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.1e-88 330.9 211 70.6
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 8.7e-83 311.2 196 70.4
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.2e-81 306.6 196 70.4
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.1e-80 302.8 230 59.6
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 2.5e-77 293.1 227 63.4
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 6.3e-73 278.5 360 41.4
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.4e-72 276.6 161 76.4
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 2.1e-68 263.5 300 43.3
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 6.1e-68 261.9 329 44.1
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 1.5e-63 247.3 183 65.0
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 5.9e-63 245.4 296 43.9
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 5.9e-63 245.4 306 43.5
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-60 236.9 216 55.6
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.0e-47 193.7 109 78.0
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 8.0e-44 181.8 297 36.4
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 7.5e-42 175.3 153 57.5
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 3.7e-33 146.4 108 66.7
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 5.4e-32 142.5 94 72.3
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 3.5e-31 139.8 94 71.3
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 5.9e-31 139.0 92 71.7
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.3e-30 137.1 131 54.2
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 5.0e-30 136.0 131 54.2
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 6.6e-30 135.6 92 69.6
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 4.3e-29 132.9 131 52.7
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 4.4e-26 122.9 319 27.6
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 5.8e-26 122.5 101 61.4
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 9.8e-26 121.7 75 70.7
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 8.3e-25 118.6 75 70.7
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 2.4e-24 117.1 66 77.3
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.3e-21 105.5 64 70.3
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 5.2e-19 99.4 133 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 4.4e-18 96.3 245 29.8
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 5.8e-18 95.9 92 55.4
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 5.8e-18 95.9 101 49.5
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 1.9e-16 90.9 61 67.2
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 2.3e-14 84.0 51 72.5
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 1.5e-10 71.2 76 47.4
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 2.0e-10 70.9 42 71.4
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 5.8e-10 69.3 41 75.6
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 5.8e-10 69.3 41 75.6
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 5.8e-10 69.3 46 67.4
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 4.6e-07 59.7 34 79.4


User provided reference genes

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