Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 5.3e-156 554.3 276 100.0
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 3.6e-128 461.8 287 82.2
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.8e-117 425.6 283 77.4
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 3.3e-105 385.6 288 67.7
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 1.1e-100 370.5 287 65.9
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.2e-96 357.1 265 66.8
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.2e-96 357.1 259 68.7
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.6e-96 356.7 267 68.2
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 4.7e-96 355.1 277 66.1
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 6.2e-96 354.8 250 70.4
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.4e-95 353.6 267 68.5
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.8e-95 353.2 269 68.4
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 3.1e-95 352.4 262 67.9
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 3.1e-95 352.4 262 67.9
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 3.1e-95 352.4 264 67.4
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 3.1e-95 352.4 245 69.4
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 4.0e-95 352.1 284 64.8
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 5.2e-95 351.7 259 67.6
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 5.2e-95 351.7 236 71.6
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 6.8e-95 351.3 258 68.2
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 8.9e-95 350.9 261 67.8
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 8.9e-95 350.9 261 67.8
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 8.9e-95 350.9 261 67.4
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 8.9e-95 350.9 254 69.3
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 1.2e-94 350.5 259 67.2
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.2e-94 350.5 268 65.7
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 2.0e-94 349.7 262 66.0
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 2.0e-94 349.7 263 67.3
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 2.0e-94 349.7 268 66.0
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.6e-94 349.4 259 67.2
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.6e-94 349.4 271 65.3
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 4.4e-94 348.6 243 70.0
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 5.8e-94 348.2 237 70.9
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.3e-93 347.1 260 66.9
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.3e-93 347.1 260 67.7
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.7e-93 346.7 258 67.4
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.2e-93 346.3 258 67.1
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 2.2e-93 346.3 260 65.8
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 2.2e-93 346.3 256 68.4
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 2.9e-93 345.9 260 66.5
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 3.7e-93 345.5 260 66.5
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 3.7e-93 345.5 236 70.3
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 3.7e-93 345.5 257 67.3
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 3.7e-93 345.5 261 67.4
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 4.9e-93 345.1 240 68.8
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 4.9e-93 345.1 255 68.2
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 6.4e-93 344.7 257 67.3
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 1.1e-92 344.0 257 67.7
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.1e-92 344.0 264 66.7
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.1e-92 344.0 255 67.8
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.4e-92 343.6 255 67.8
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.4e-92 343.6 255 67.8
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.9e-92 343.2 264 65.5
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 1.9e-92 343.2 263 65.8
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 3.2e-92 342.4 255 67.1
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 3.2e-92 342.4 267 64.8
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 4.1e-92 342.0 259 66.8
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 7.1e-92 341.3 237 68.4
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 7.1e-92 341.3 272 63.6
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 9.2e-92 340.9 237 68.8
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 9.2e-92 340.9 279 63.8
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.2e-91 340.5 257 66.9
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.6e-91 340.1 264 63.6
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 2.1e-91 339.7 258 65.9
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 2.1e-91 339.7 261 65.1
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.1e-91 339.7 257 65.0
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 2.7e-91 339.3 259 67.2
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 2.7e-91 339.3 256 69.1
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 2.7e-91 339.3 236 69.5
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 3.5e-91 339.0 241 68.0
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 4.6e-91 338.6 276 63.4
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 6.0e-91 338.2 262 64.9
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 6.0e-91 338.2 262 66.0
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 6.0e-91 338.2 258 65.1
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 6.0e-91 338.2 240 68.8
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 7.8e-91 337.8 263 65.8
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 7.8e-91 337.8 272 62.9
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 7.8e-91 337.8 268 66.0
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 7.8e-91 337.8 259 67.2
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 1.3e-90 337.0 257 66.1
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.7e-90 336.7 263 63.9
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 3.9e-90 335.5 261 64.8
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 3.9e-90 335.5 261 64.8
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 3.9e-90 335.5 262 65.6
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 3.9e-90 335.5 243 67.5
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.9e-90 335.5 247 68.0
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 6.6e-90 334.7 247 67.2
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 1.1e-89 334.0 255 66.3
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.9e-89 333.2 259 65.3
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.3e-89 332.0 260 66.2
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.6e-89 331.6 237 67.9
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 7.3e-89 331.3 224 71.0
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 7.3e-89 331.3 267 63.7
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 2.1e-88 329.7 237 67.1
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 2.8e-88 329.3 259 64.1
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 3.6e-88 328.9 248 66.1
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 6.2e-88 328.2 275 58.9
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 2.4e-87 326.2 225 71.1
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 4.0e-87 325.5 236 66.1
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.2e-86 323.9 240 65.0
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.8e-86 321.6 257 62.6
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 9.9e-86 320.9 244 62.3
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.1e-84 317.4 273 59.3
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 1.9e-84 316.6 259 61.0
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 9.2e-84 314.3 221 67.9
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.2e-83 313.9 240 65.4
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 2.1e-80 303.1 287 58.2
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.8e-80 302.8 258 61.2
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 9.0e-79 297.7 225 65.3
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.8e-77 292.4 378 45.5
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.4e-76 290.4 240 58.8
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.2e-75 287.3 237 59.1
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 2.1e-75 286.6 272 56.6
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 6.0e-75 285.0 198 71.7
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.3e-74 283.9 262 56.1
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.3e-74 283.1 239 60.3
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.9e-73 280.0 239 58.2
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 1.8e-66 256.9 187 67.9
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 2.5e-65 253.1 263 52.5
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 3.3e-65 252.7 188 63.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 5.8e-62 241.9 240 52.9
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 3.0e-58 229.6 171 64.3
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 3.9e-58 229.2 227 55.1
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 5.6e-57 225.3 227 51.5
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 6.2e-56 221.9 176 60.2
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 3.1e-55 219.5 254 47.6
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.8e-50 203.8 152 67.1
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-49 201.1 258 45.0
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 3.3e-49 199.5 135 71.9
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 1.4e-44 184.1 219 44.7
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.2e-40 170.2 252 41.7
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 6.9e-39 165.2 195 44.1
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.5e-38 164.1 103 70.9
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 4.5e-38 162.5 184 42.4
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 2.5e-36 156.8 85 84.7
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 3.2e-36 156.4 125 64.0
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 7.2e-36 155.2 126 62.7
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.0e-30 137.1 116 58.6
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.3e-29 134.4 84 73.8
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 5.7e-25 119.0 72 73.6
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 7.4e-25 118.6 91 61.5
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 6.5e-21 105.5 207 31.4
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.5e-20 103.6 84 61.9
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 6.1e-19 99.0 108 50.0
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.7e-16 90.9 63 61.9
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.1e-15 86.3 86 55.8
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 6.1e-11 72.4 49 67.3
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.0e-10 71.6 70 58.6
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 6.8e-10 68.9 237 28.3
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.6e-09 67.0 241 27.4
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 5.7e-09 65.9 206 28.6
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 2.8e-08 63.5 232 27.2
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 8.3e-08 62.0 236 25.8
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 1.8e-07 60.8 232 25.9
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 4.1e-07 59.7 223 26.5
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 4.1e-07 59.7 231 25.5
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 5.4e-07 59.3 160 31.9
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 5.4e-07 59.3 245 27.3
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 9.1e-07 58.5 273 24.9
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 2.7e-06 57.0 213 28.6
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.7e-06 57.0 174 28.2
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 4.5e-06 56.2 226 29.2
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 4.5e-06 56.2 213 27.2
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 4.5e-06 56.2 295 25.8
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 5.9e-06 55.8 253 26.9
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 5.9e-06 55.8 28 89.3
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 5.9e-06 55.8 207 28.5


User provided reference genes

Program Settings