Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.1e-65 253.1 125 100.0
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.7e-56 222.6 124 85.5
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.2e-56 222.2 124 85.5
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.2e-56 222.2 124 85.5
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 3.1e-55 218.4 124 82.3
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.2e-54 216.5 124 82.3
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 2.6e-54 215.3 124 80.6
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.9e-53 211.8 124 80.6
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 3.8e-53 211.5 115 86.1
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 1.5e-52 209.5 124 79.8
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.9e-52 209.1 124 80.6
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 7.2e-52 207.2 115 85.2
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 9.4e-52 206.8 115 84.3
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.6e-51 206.1 124 76.6
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.6e-51 206.1 124 76.6
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 2.7e-51 205.3 124 79.0
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.7e-51 205.3 119 82.4
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.7e-51 205.3 124 78.2
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.7e-51 205.3 115 83.5
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 4.7e-51 204.5 126 78.6
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.7e-51 204.5 119 82.4
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 4.7e-51 204.5 119 82.4
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 4.7e-51 204.5 118 80.5
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 8.0e-51 203.8 124 77.4
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 8.0e-51 203.8 124 78.2
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.0e-50 203.4 115 85.2
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.4e-50 203.0 115 82.6
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.8e-50 202.6 115 84.3
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 1.8e-50 202.6 118 81.4
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.8e-50 202.6 115 82.6
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.8e-50 202.6 121 80.2
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 2.3e-50 202.2 115 83.5
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.3e-50 202.2 124 77.4
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 3.0e-50 201.8 115 83.5
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 3.0e-50 201.8 115 83.5
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 3.0e-50 201.8 115 83.5
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 3.0e-50 201.8 115 83.5
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 5.2e-50 201.1 115 80.9
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 5.2e-50 201.1 124 76.6
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 5.2e-50 201.1 124 75.0
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 5.2e-50 201.1 114 84.2
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 6.7e-50 200.7 115 83.5
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 8.8e-50 200.3 115 83.5
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 8.8e-50 200.3 115 83.5
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 8.8e-50 200.3 115 83.5
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 8.8e-50 200.3 115 82.6
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 1.2e-49 199.9 124 76.6
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.5e-49 199.5 118 79.7
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.5e-49 199.5 118 79.7
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 2.0e-49 199.1 115 81.7
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 2.0e-49 199.1 118 78.8
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.0e-49 199.1 124 75.8
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 3.3e-49 198.4 115 80.0
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 3.3e-49 198.4 115 80.0
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 3.3e-49 198.4 122 75.4
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 4.4e-49 198.0 115 82.6
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 4.4e-49 198.0 124 73.4
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 4.4e-49 198.0 124 73.4
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 7.5e-49 197.2 123 78.0
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 1.3e-48 196.4 124 75.0
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 2.8e-48 195.3 121 75.2
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 2.8e-48 195.3 119 78.2
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 2.8e-48 195.3 119 78.2
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 2.8e-48 195.3 118 77.1
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 3.7e-48 194.9 117 82.1
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 4.8e-48 194.5 112 82.1
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 8.2e-48 193.7 121 76.9
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 8.2e-48 193.7 146 65.1
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 8.2e-48 193.7 112 79.5
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 3.1e-47 191.8 120 75.0
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 4.1e-47 191.4 118 76.3
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.1e-47 191.4 118 76.3
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 5.3e-47 191.0 118 75.4
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 5.3e-47 191.0 118 75.4
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.2e-46 189.9 114 78.9
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 3.5e-46 188.3 119 76.5
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 4.5e-46 188.0 124 72.6
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 5.9e-46 187.6 124 71.8
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 5.9e-46 187.6 124 71.8
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 2.2e-45 185.7 119 73.9
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 3.8e-45 184.9 122 73.0
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 5.0e-45 184.5 140 65.7
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 6.5e-45 184.1 114 76.3
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.5e-44 183.0 121 71.1
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.5e-44 183.0 114 77.2
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 2.5e-44 182.2 121 74.4
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 4.2e-44 181.4 138 64.5
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.2e-44 180.6 118 72.0
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 9.4e-44 180.3 146 63.0
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 1.2e-43 179.9 115 75.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.6e-43 179.5 124 69.4
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 2.1e-43 179.1 114 72.8
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 2.1e-43 179.1 114 72.8
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.0e-42 176.8 122 70.5
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.0e-42 176.8 114 72.8
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.0e-42 176.8 114 73.7
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.4e-42 176.4 115 69.6
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.8e-42 176.0 122 69.7
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 2.3e-42 175.6 114 70.2
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 3.0e-42 175.3 105 77.1
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 1.5e-41 172.9 115 69.6
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 5.7e-41 171.0 111 70.3
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 9.8e-41 170.2 112 75.0
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 9.8e-41 170.2 115 68.7
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 2.2e-40 169.1 115 73.0
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 4.1e-39 164.9 115 67.0
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.9e-28 129.4 72 87.5
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 1.8e-26 122.9 85 70.6
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 6.8e-26 120.9 118 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 1.5e-25 119.8 112 51.8
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.5e-25 119.8 129 47.3
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.4e-25 118.2 73 75.3
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 7.5e-25 117.5 68 79.4
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 2.9e-24 115.5 72 72.2
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 2.4e-23 112.5 68 75.0
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 3.2e-23 112.1 68 73.5
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 3.2e-23 112.1 67 76.1
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 2.0e-22 109.4 67 74.6
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 4.6e-22 108.2 75 68.0
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 6.6e-21 104.4 60 80.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 6.6e-21 104.4 68 67.6
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 6.6e-21 104.4 77 63.6
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 2.5e-20 102.4 120 43.3
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 8.0e-19 97.4 59 79.7
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 2.3e-18 95.9 79 62.0
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 4.0e-18 95.1 56 82.1
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 5.8e-17 91.3 57 75.4
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 9.8e-17 90.5 51 86.3
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 1.7e-16 89.7 108 47.2
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 3.7e-16 88.6 58 70.7
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 3.7e-16 88.6 51 84.3
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 1.1e-15 87.0 71 59.2
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 1.9e-15 86.3 48 83.3
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 4.1e-15 85.1 69 56.5
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 7.0e-15 84.3 57 73.7
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 1.9e-12 76.3 101 40.6
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 2.1e-11 72.8 46 73.9
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 6.2e-11 71.2 40 80.0
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 6.2e-11 71.2 57 61.4
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 6.2e-11 71.2 40 80.0
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 1.8e-10 69.7 57 59.6
QL04p094979 Quercus lobata HOM05D000510 ORTHO05D001548 9.2e-07 57.4 76 40.8


User provided reference genes

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