Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold185G40051 Striga asiatica HOM05D011878 ORTHO05D011270 8.7e-131 470.3 239 100.0
SGA_v2.0_scaffold16G07519 Striga asiatica HOM05D011878 ORTHO05D011270 9.4e-101 370.5 222 84.2
SGA_v2.0_scaffold20G08945 Striga asiatica HOM05D011878 ORTHO05D011270 9.2e-48 194.5 122 77.9
SGA_v2.0_scaffold51G18773 Striga asiatica HOM05D011878 ORTHO05D011270 1.9e-45 186.8 164 64.0
SGA_v2.0_scaffold8G04271 Striga asiatica HOM05D011878 ORTHO05D011270 1.1e-37 161.0 301 36.2
SGA_v2.0_scaffold57G20196 Striga asiatica HOM05D011878 ORTHO05D011270 2.5e-37 159.8 126 62.7
SGA_v2.0_scaffold124G33517 Striga asiatica HOM05D011878 ORTHO05D011270 2.0e-34 150.2 83 81.9
SGA_v2.0_scaffold3G01819 Striga asiatica HOM05D011878 ORTHO05D011270 6.0e-31 138.7 152 50.0
SGA_v2.0_scaffold51G18699 Striga asiatica HOM05D046673 ORTHO05D011270 9.3e-24 114.8 77 76.6
SGA_v2.0_scaffold10G05309 Striga asiatica HOM05D011878 ORTHO05D011270 1.9e-21 107.1 142 40.8
SGA_v2.0_scaffold196G40962 Striga asiatica HOM05D036718 ORTHO05D011270 5.5e-16 89.0 52 78.8
SGA_v2.0_scaffold14G06875 Striga asiatica HOM05D011878 ORTHO05D011270 9.3e-16 88.2 242 32.2
SGA_v2.0_scaffold177G39432 Striga asiatica HOM05D011878 ORTHO05D011270 9.3e-16 88.2 270 29.3
SGA_v2.0_scaffold234G43644 Striga asiatica HOM05D014194 ORTHO05D014656 8.7e-14 81.6 267 30.0
FvH4_4g27332 Fragaria vesca HOM05D017263 ORTHO05D020626 4.8e-12 75.9 273 28.2
Rhsim02G0126800 Rhododendron simsii HOM05D009480 ORTHO05D010036 4.8e-12 75.9 236 31.8
FvH4_3g37591 Fragaria vesca HOM05D017263 ORTHO05D020626 9.0e-11 71.6 251 27.1
SGA_v2.0_scaffold51G18700 Striga asiatica HOM05D011878 ORTHO05D011270 1.2e-10 71.2 42 85.7
Prupe.1G074100 Prunus persica HOM05D014194 ORTHO05D011270 2.0e-10 70.5 80 45.0
TWI38G1085 Tripterygium wilfordii HOM05D000045 ORTHO05D011270 4.5e-10 69.3 292 27.1
Oeu041131.1 Olea europaea HOM05D000045 ORTHO05D011270 5.9e-10 68.9 87 40.2
SGA_v2.0_scaffold92G28143 Striga asiatica HOM05D011878 ORTHO05D011270 1.0e-09 68.2 85 42.4
Oeu032610.1 Olea europaea HOM05D000045 ORTHO05D000611 1.7e-09 67.4 75 44.0
Rhsim04G0171600 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.9e-09 66.6 125 38.4
Rhsim05G0116800 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.8e-09 66.2 123 39.8
Rhsim05G0122000 Rhododendron simsii HOM05D000045 ORTHO05D010036 3.8e-09 66.2 125 38.4
Rhsim05G0139200 Rhododendron simsii HOM05D000045 ORTHO05D010036 3.8e-09 66.2 125 38.4
Ciclev10013881m.g Citrus clementina HOM05D000045 ORTHO05D000067 5.0e-09 65.9 113 36.3
Rhsim03G0080800 Rhododendron simsii HOM05D000045 ORTHO05D010036 5.0e-09 65.9 125 39.2
Rhsim07G0160800 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.0e-09 65.9 125 39.2
Rhsim05G0228500 Rhododendron simsii HOM05D000045 ORTHO05D010036 6.5e-09 65.5 125 39.2
Rhsim13G0132100 Rhododendron simsii HOM05D000045 ORTHO05D010036 6.5e-09 65.5 114 38.6
Rhsim02G0163400 Rhododendron simsii HOM05D000045 ORTHO05D010036 1.1e-08 64.7 125 38.4
Rhsim09G0033300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-08 64.7 120 36.7
MD15G1227300 Malus domestica HOM05D000045 ORTHO05D000067 1.9e-08 63.9 90 40.0
Oeu064496.1 Olea europaea HOM05D000045 ORTHO05D011270 1.9e-08 63.9 97 39.2
Rhsim07G0161600 Rhododendron simsii HOM05D000045 ORTHO05D010036 1.9e-08 63.9 125 38.4
TWI56G0811 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.9e-08 63.9 88 42.0
Atru.chr4.2343 Acer truncatum HOM05D000045 ORTHO05D000067 3.2e-08 63.2 87 40.2
Rhsim01G0177800 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.2e-08 63.2 125 37.6
TWI53G1228 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.2e-08 63.2 88 42.0
TWI53G2134 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.2e-08 63.2 88 42.0
TWI79G0465 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.2e-08 63.2 88 42.0
Rhsim13G0135200 Rhododendron simsii HOM05D000045 ORTHO05D010036 4.2e-08 62.8 125 36.8
Atru.chr4.2354 Acer truncatum HOM05D000045 ORTHO05D000067 5.5e-08 62.4 87 40.2
Ciclev10030397m.g Citrus clementina HOM05D009480 ORTHO05D010036 5.5e-08 62.4 113 35.4
Rhsim02G0105500 Rhododendron simsii HOM05D000045 ORTHO05D010036 5.5e-08 62.4 141 34.8
Aqoxy1G02677 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 7.2e-08 62.0 90 33.3
Oeu028875.1 Olea europaea HOM05D009480 ORTHO05D010036 7.2e-08 62.0 126 34.9
CSS0016804 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.4e-08 61.6 75 37.3
Hma1.2p1_0032F.1_g018650 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 9.4e-08 61.6 75 37.3
Glyma.01G000600 Glycine max HOM05D000045 ORTHO05D000067 1.6e-07 60.8 76 36.8
MBI14_g09099_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 1.6e-07 60.8 116 33.6
Rhsim09G0160500 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.6e-07 60.8 142 35.2
TWI38G0144 Tripterygium wilfordii HOM05D000045 ORTHO05D010036 1.6e-07 60.8 131 33.6
Nitab4.5_0001220g0110 Nicotiana tabacum HOM05D000045 ORTHO05D000067 2.1e-07 60.5 74 37.8
Nitab4.5_0009244g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000067 2.1e-07 60.5 74 37.8
Solyc01g112320.3 Solanum lycopersicum HOM05D000045 ORTHO05D000067 2.1e-07 60.5 74 37.8
Sopen01g054420 Solanum pennellii HOM05D000045 ORTHO05D000067 2.1e-07 60.5 74 37.8
CSS0018875 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.7e-07 60.1 75 36.0
FvH4_5g31093 Fragaria vesca HOM05D000045 ORTHO05D010036 2.7e-07 60.1 119 32.8
Ah.01g017750 Amaranthus hybridus HOM05D000045 ORTHO05D000067 3.6e-07 59.7 67 40.3
Aqoxy3G00990 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 3.6e-07 59.7 86 45.3
Aqoxy4G01093 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 3.6e-07 59.7 86 45.3
Aqoxy7G02431 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 3.6e-07 59.7 86 45.3
CSS0007508 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.6e-07 59.7 89 38.2
CSS0016715 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.6e-07 59.7 89 38.2
FAN09G4686 Fragaria x ananassa HOM05D000045 ORTHO05D011270 3.6e-07 59.7 75 41.3
Nn5g31065 Nelumbo nucifera HOM05D000045 ORTHO05D000067 3.6e-07 59.7 65 40.0
Nn5g31066 Nelumbo nucifera HOM05D000045 ORTHO05D000067 3.6e-07 59.7 65 40.0
PSO017G4008 Papaver somniferum HOM05D000045 ORTHO05D000067 3.6e-07 59.7 65 40.0
PSO170G0991 Papaver somniferum HOM05D000045 ORTHO05D000067 3.6e-07 59.7 65 40.0
Potri.011G145800 Populus trichocarpa HOM05D000045 ORTHO05D000067 3.6e-07 59.7 63 41.3
Migut.O00582 Erythranthe guttata HOM05D000045 ORTHO05D000067 4.6e-07 59.3 74 35.1
Manes.02G117425 Manihot esculenta HOM05D000045 ORTHO05D000067 4.6e-07 59.3 65 41.5
Manes.15G114300 Manihot esculenta HOM05D000045 ORTHO05D000067 4.6e-07 59.3 76 36.8
Rhsim10G0159200 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.1e-07 58.9 149 33.6
Rhsim11G0199100 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.1e-07 58.9 73 35.6
Aqoxy7G02429 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 7.9e-07 58.5 86 44.2
Hma1.2p1_0085F.1_g044300 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 7.9e-07 58.5 89 34.8
Oeu024598.1 Olea europaea HOM05D000045 ORTHO05D014656 7.9e-07 58.5 88 38.6
Rhsim12G0095300 Rhododendron simsii HOM05D000045 ORTHO05D010036 7.9e-07 58.5 149 33.6
CiPaw.05G095500 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
ClCG02G003190 Citrullus lanatus HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
Ciclev10027888m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
ECA233G1818 Erigeron canadensis HOM05D000045 ORTHO05D000067 1.0e-06 58.2 69 44.9
Eucgr.I01547 Eucalyptus grandis HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
FvH4_2g17131 Fragaria vesca HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
Glyma.14G000400 Glycine max HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
Gohir.A13G064000 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
Gohir.D13G057900 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
Gorai.013G065300 Gossypium raimondii HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
HanXRQChr14g0455151 Helianthus annuus HOM05D000045 ORTHO05D000067 1.0e-06 58.2 74 36.5
MD10G1143900 Malus domestica HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
Prupe.8G182700 Prunus persica HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
PGR142G2456 Punica granatum HOM05D000045 ORTHO05D000067 1.0e-06 58.2 91 35.2
QL11p056923 Quercus lobata HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
RcHm_v2.0_Chr6g0281561 Rosa chinensis HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
Thecc.02G148800 Theobroma cacao HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 34.2
TWI75G0844 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 1.0e-06 58.2 76 35.5
vmacro20404 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 1.0e-06 58.2 65 38.5
Aqoxy4G01738 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 1.4e-06 57.8 84 40.5
MSTRG.18722 Avicennia marina HOM05D000045 ORTHO05D000067 1.4e-06 57.8 75 34.7
CDE04G1531 Ceratophyllum demersum HOM05D000045 ORTHO05D000611 1.4e-06 57.8 89 38.2
CDE12G0459 Ceratophyllum demersum HOM05D000045 ORTHO05D000067 1.4e-06 57.8 89 38.2
Rhsim11G0003900 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.4e-06 57.8 135 33.3
Sabra11G0130900 Salix brachista HOM05D000045 ORTHO05D000067 1.4e-06 57.8 63 39.7
CDE04G0328 Ceratophyllum demersum HOM05D000045 ORTHO05D000611 1.8e-06 57.4 80 43.8
MD05G1144600 Malus domestica HOM05D000045 ORTHO05D000067 1.8e-06 57.4 76 35.5
Rhsim10G0190800 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.8e-06 57.4 65 36.9
TAR629G1531 Trochodendron aralioides HOM05D000045 ORTHO05D000067 1.8e-06 57.4 114 36.0
CDE05G1292 Ceratophyllum demersum HOM05D000045 ORTHO05D000067 2.3e-06 57.0 60 41.7
CDE05G1679 Ceratophyllum demersum HOM05D000045 ORTHO05D000611 2.3e-06 57.0 60 41.7
Duzib052G0228 Durio zibethinus HOM05D000045 ORTHO05D000067 2.3e-06 57.0 74 35.1
Peaxi162Scf00431g00213 Petunia axillaris HOM05D000045 ORTHO05D011917 2.3e-06 57.0 65 38.5
Prupe.7G188000 Prunus persica HOM05D000045 ORTHO05D000067 2.3e-06 57.0 90 35.6
Sed0005983 Sechium edule HOM05D000045 ORTHO05D000067 2.3e-06 57.0 76 34.2
TWI79G1283 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.3e-06 57.0 76 35.5
Atru.chr4.1197 Acer truncatum HOM05D000045 ORTHO05D000611 3.0e-06 56.6 111 34.2
Lalb_Chr09g0324891 Lupinus albus HOM05D000045 ORTHO05D000067 3.0e-06 56.6 85 35.3
Hund06349 Selenicereus undatus HOM05D000045 ORTHO05D000067 3.0e-06 56.6 73 34.2
SGA_v2.0_scaffold47G17527 Striga asiatica HOM05D014194 ORTHO05D014656 3.0e-06 56.6 92 38.0
TWI60G1709 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.0e-06 56.6 88 37.5
HPP92_016902 Vanilla planifolia HOM05D000045 ORTHO05D000067 3.0e-06 56.6 92 32.6
Atru.chr5.3589 Acer truncatum HOM05D000045 ORTHO05D000067 3.9e-06 56.2 74 35.1
LjContig00081g0010089 Lotus japonicus HOM05D000045 ORTHO05D000067 3.9e-06 56.2 74 35.1
Potri.004G209000 Populus trichocarpa HOM05D000045 ORTHO05D000067 3.9e-06 56.2 74 35.1
RhsimUnG0116300 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.9e-06 56.2 64 46.9
TWI74G0282 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.9e-06 56.2 88 37.5
Duzib132G0605 Durio zibethinus HOM05D000045 ORTHO05D000067 5.1e-06 55.8 76 34.2
Hma1.2p1_0161F.1_g071540 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 5.1e-06 55.8 81 39.5
PSO541G0560 Papaver somniferum HOM05D000045 ORTHO05D000067 5.1e-06 55.8 127 28.3
PSO675G6965 Papaver somniferum HOM05D000045 ORTHO05D000067 5.1e-06 55.8 127 28.3
Phvul.008G293000 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 5.1e-06 55.8 74 35.1
Prupe.3G186100 Prunus persica HOM05D000045 ORTHO05D000067 5.1e-06 55.8 95 38.9
QL10p049180 Quercus lobata HOM05D000045 ORTHO05D000611 5.1e-06 55.8 88 39.8
Rhsim05G0139300 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.1e-06 55.8 64 46.9
Sabra04G0140900 Salix brachista HOM05D000045 ORTHO05D000067 5.1e-06 55.8 74 35.1
HPP92_002489 Vanilla planifolia HOM05D000045 ORTHO05D000067 5.1e-06 55.8 111 33.3
Thhalv10024456m.g Eutrema salsugineum HOM05D000045 ORTHO05D000067 6.7e-06 55.5 75 34.7
Lj2g0014388 Lotus japonicus HOM05D000045 ORTHO05D000067 6.7e-06 55.5 79 34.2
TPR.G18639 Trifolium pratense HOM05D000045 ORTHO05D000067 6.7e-06 55.5 73 34.2
TWI79G1218 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 6.7e-06 55.5 88 36.4
CANSAT01G1690 Cannabis sativa HOM05D000045 ORTHO05D000067 8.8e-06 55.1 60 46.7
AUR62010211 Chenopodium quinoa HOM05D000045 ORTHO05D000067 8.8e-06 55.1 64 37.5
AUR62013200 Chenopodium quinoa HOM05D000045 ORTHO05D000067 8.8e-06 55.1 64 37.5
Ciclev10021846m.g Citrus clementina HOM05D000045 ORTHO05D000611 8.8e-06 55.1 86 38.4
MELO3C015688.2 Cucumis melo HOM05D000045 ORTHO05D000067 8.8e-06 55.1 76 34.2
CsaV3_7G002210 Cucumis sativus L. HOM05D000045 ORTHO05D000067 8.8e-06 55.1 76 34.2
FvH4_6g39512 Fragaria vesca HOM05D000045 ORTHO05D000067 8.8e-06 55.1 95 38.9
MD09G1139600 Malus domestica HOM05D000045 ORTHO05D000067 8.8e-06 55.1 91 39.6
Nn1g00919 Nelumbo nucifera HOM05D000045 ORTHO05D000611 8.8e-06 55.1 136 26.5
Psat2g000440 Pisum sativum HOM05D000045 ORTHO05D000067 8.8e-06 55.1 73 34.2
Rhsim02G0171700 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.8e-06 55.1 76 40.8
Rhsim12G0014700 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.8e-06 55.1 60 46.7
RcHm_v2.0_Chr2g0153561 Rosa chinensis HOM05D000045 ORTHO05D000067 8.8e-06 55.1 95 38.9
Sed0004300 Sechium edule HOM05D000045 ORTHO05D000067 8.8e-06 55.1 75 42.7
THA.LOC104824729 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 8.8e-06 55.1 80 32.5
TAR633G1461 Trochodendron aralioides HOM05D000045 ORTHO05D000067 8.8e-06 55.1 115 33.0


User provided reference genes

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