Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 1.1e-99 366.7 197 100.0
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 1.4e-73 280.0 200 75.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 1.5e-72 276.6 200 72.5
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 9.9e-72 273.9 200 71.0
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.9e-71 272.3 200 71.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 3.9e-68 261.9 207 70.0
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.9e-67 259.6 182 74.7
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 7.3e-67 257.7 200 66.5
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.4e-65 252.7 200 67.0
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 3.1e-65 252.3 200 66.5
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 9.0e-65 250.8 200 67.0
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 3.4e-64 248.8 200 66.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 2.2e-63 246.1 200 66.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 2.2e-63 246.1 200 66.0
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 2.7e-61 239.2 182 69.8
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 1.0e-60 237.3 200 64.0
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.3e-60 236.9 200 64.0
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 3.0e-60 235.7 198 63.1
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 6.6e-60 234.6 200 63.5
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.1e-59 233.8 201 66.2
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 1.5e-59 233.4 200 61.5
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 3.3e-59 232.3 200 60.0
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 4.3e-59 231.9 200 62.5
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 9.6e-59 230.7 201 64.2
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 2.8e-58 229.2 200 63.0
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 3.6e-58 228.8 200 61.0
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 4.8e-58 228.4 200 64.0
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.8e-57 226.5 202 61.4
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 5.3e-57 224.9 200 63.0
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 2.0e-56 223.0 200 58.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 4.5e-56 221.9 201 60.2
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 9.9e-56 220.7 201 59.7
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.3e-55 220.3 198 57.1
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.7e-55 219.9 201 59.2
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.7e-55 219.9 206 60.2
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.4e-54 216.9 206 59.7
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 3.2e-54 215.7 200 59.0
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 4.2e-54 215.3 166 68.7
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 1.6e-53 213.4 200 57.5
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.5e-53 212.2 181 63.5
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 6.0e-53 211.5 201 59.2
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 7.9e-53 211.1 182 65.4
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.0e-52 210.7 182 60.4
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.8e-52 209.9 200 54.0
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.8e-52 209.9 200 56.5
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.3e-52 209.5 200 57.5
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.0e-52 209.1 182 61.5
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.0e-52 209.1 182 60.4
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 8.7e-52 207.6 200 57.0
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.1e-51 207.2 183 60.1
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.1e-51 207.2 198 55.1
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.5e-51 206.8 197 55.3
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 4.3e-51 205.3 195 59.5
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 4.3e-51 205.3 181 57.5
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.6e-50 203.4 200 56.5
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 2.1e-50 203.0 200 53.5
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.1e-50 203.0 200 54.0
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 4.8e-50 201.8 181 59.7
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 6.2e-50 201.4 201 57.2
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.1e-49 200.7 182 59.9
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.4e-49 199.5 200 53.0
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 9.0e-49 197.6 200 54.5
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 9.0e-49 197.6 205 54.1
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.5e-48 196.8 197 52.3
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.5e-48 196.8 200 52.5
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 2.6e-48 196.1 200 53.0
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 4.5e-48 195.3 198 54.0
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 2.2e-47 193.0 155 68.4
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 2.9e-47 192.6 199 53.8
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 4.9e-47 191.8 199 53.8
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 1.1e-46 190.7 198 54.5
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 1.9e-46 189.9 198 54.0
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 2.5e-46 189.5 182 57.1
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 2.5e-46 189.5 200 54.0
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 4.2e-46 188.7 200 48.5
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 7.1e-46 188.0 239 45.6
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 9.3e-46 187.6 198 52.5
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.6e-45 186.8 197 52.3
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.6e-45 186.8 181 54.1
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 2.7e-45 186.0 198 51.5
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 6.0e-45 184.9 198 51.5
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.9e-45 184.5 230 47.8
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 1.8e-44 183.3 198 52.0
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.8e-44 183.3 198 51.0
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.8e-44 183.3 200 48.5
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 3.9e-44 182.2 163 61.3
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 1.1e-43 180.6 182 53.8
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 3.3e-43 179.1 200 52.5
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 5.7e-43 178.3 182 54.4
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 2.1e-42 176.4 161 57.1
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 3.4e-40 169.1 162 54.9
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 4.5e-40 168.7 200 49.0
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 6.5e-39 164.9 164 56.7
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.0e-36 157.5 142 59.9
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 2.3e-36 156.4 195 45.6
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.8e-33 146.7 178 48.3
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 1.5e-32 143.7 184 47.3
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 3.4e-32 142.5 147 55.1
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 3.4e-32 142.5 182 44.5
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.3e-31 140.6 137 57.7
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 2.9e-31 139.4 193 39.9
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.8e-31 139.0 155 45.2
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.2e-30 136.0 117 65.8
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 7.2e-30 134.8 151 52.3
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 6.1e-29 131.7 155 41.9
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.1e-27 127.5 151 47.0
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.3e-27 125.9 111 64.0
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 4.8e-26 122.1 145 47.6
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 4.8e-26 122.1 111 60.4
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 8.2e-26 121.3 85 74.1
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.8e-25 120.2 125 53.6
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.0e-24 116.7 84 70.2
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 7.4e-19 98.2 191 33.5
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.3e-18 97.4 184 32.1
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 1.4e-17 94.0 121 50.4
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.8e-17 93.6 80 57.5
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.7e-15 87.0 84 52.4
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 2.2e-15 86.7 155 34.8
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.1e-14 84.3 105 43.8
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.6e-11 73.2 61 57.4
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 4.8e-10 68.9 166 29.5
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 1.1e-06 57.8 102 37.3


User provided reference genes

Program Settings