Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 3.0e-188 662.1 453 100.0
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.8e-113 413.7 465 56.3
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.2e-112 411.0 469 55.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 8.0e-101 371.7 464 50.9
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 4.1e-97 359.4 468 49.8
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 9.2e-97 358.2 468 50.4
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.6e-96 357.5 470 50.9
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.0e-95 354.8 471 50.3
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.9e-94 350.5 469 50.7
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.9e-94 350.5 469 50.7
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 2.5e-94 350.1 472 49.4
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 9.5e-94 348.2 468 50.0
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.2e-93 347.8 468 48.7
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.1e-93 347.1 463 49.5
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 8.0e-93 345.1 468 49.1
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 5.2e-92 342.4 464 49.8
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.0e-91 340.5 458 48.7
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.6e-91 340.1 466 48.3
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 9.8e-91 338.2 456 49.1
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.2e-90 337.0 456 49.1
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.2e-90 337.0 464 47.8
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 2.2e-90 337.0 458 47.8
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.7e-90 336.3 469 48.2
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 4.9e-90 335.9 490 47.8
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.4e-89 334.3 471 48.2
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.2e-89 333.2 463 47.3
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.1e-89 332.8 463 47.3
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 9.2e-89 331.6 468 48.7
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 9.2e-89 331.6 467 48.0
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.6e-88 330.9 456 48.5
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 2.0e-88 330.5 463 46.7
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.7e-88 330.1 463 47.1
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 3.5e-88 329.7 468 46.6
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 5.0e-87 325.9 463 46.9
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 2.1e-85 320.5 457 47.7
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 2.1e-85 320.5 457 46.4
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.1e-85 320.5 461 47.5
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 2.8e-85 320.1 468 47.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 3.6e-85 319.7 478 51.5
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 6.2e-85 318.9 456 46.5
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 6.2e-85 318.9 457 46.4
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 3.1e-84 316.6 447 49.2
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 5.2e-84 315.8 458 47.2
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.2e-83 314.7 471 45.0
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 2.0e-83 313.9 463 48.8
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 2.6e-83 313.5 468 46.2
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.6e-83 313.5 463 45.1
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 5.8e-83 312.4 445 49.0
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 7.5e-83 312.0 458 46.1
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.3e-82 311.2 475 46.1
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 2.2e-82 310.5 461 46.0
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.9e-82 310.1 465 44.5
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 6.4e-82 308.9 455 46.4
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.4e-81 307.8 465 44.9
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 3.2e-81 306.6 452 45.4
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 5.4e-81 305.8 471 45.0
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 7.0e-81 305.4 433 48.3
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 7.0e-81 305.4 459 46.2
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.1e-80 303.9 461 45.6
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.1e-80 303.9 462 45.0
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 6.0e-80 302.4 462 44.8
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.0e-79 301.6 461 44.5
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.7e-79 300.8 468 45.5
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 5.1e-79 299.3 470 44.0
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 6.6e-79 298.9 459 44.7
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.1e-78 298.1 456 44.7
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 5.6e-78 295.8 462 44.8
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 9.5e-78 295.0 463 44.5
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 1.2e-77 294.7 463 44.9
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.6e-77 294.3 454 44.1
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.8e-77 293.5 467 44.3
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 6.2e-77 292.4 452 44.0
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 8.1e-77 292.0 479 42.4
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.5e-75 287.7 454 43.6
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 9.9e-75 285.0 465 43.0
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 9.9e-75 285.0 471 42.7
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 4.9e-74 282.7 469 42.6
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-73 281.6 454 43.4
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.1e-73 281.6 464 43.1
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 7.1e-73 278.9 456 43.2
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 2.7e-72 276.9 458 43.2
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 6.0e-72 275.8 460 43.0
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.0e-71 273.5 455 41.5
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 4.3e-70 269.6 459 42.3
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.2e-69 268.1 458 42.6
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.2e-69 268.1 469 42.0
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 4.7e-69 266.2 424 42.2
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 4.0e-68 263.1 483 41.4
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.2e-67 261.5 454 42.1
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 3.4e-67 260.0 452 41.8
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 3.4e-67 260.0 452 41.8
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.1e-64 250.8 404 43.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-62 244.2 296 52.0
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 6.2e-61 239.2 436 41.1
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 4.0e-60 236.5 299 54.8
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 4.0e-60 236.5 294 50.0
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 4.0e-60 236.5 291 52.2
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 9.0e-60 235.3 454 40.3
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.6e-59 233.8 455 40.2
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 4.4e-59 233.0 297 50.8
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.3e-58 231.5 482 38.0
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.9e-57 227.6 459 37.9
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.7e-56 223.8 454 37.7
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.3e-54 215.7 371 40.7
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 3.6e-53 213.4 473 36.6
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-51 208.0 416 37.5
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.9e-50 203.8 450 36.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.1e-45 187.6 367 38.1
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 6.2e-45 186.0 429 36.1
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.9e-44 182.6 398 34.4
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 3.2e-41 173.7 179 57.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.3e-39 168.3 180 55.0
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 6.7e-39 166.0 470 32.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.1e-32 144.4 142 60.6
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.1e-32 142.9 175 51.4
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.9e-31 140.2 269 39.8
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.9e-30 137.9 166 51.8
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.1e-28 132.1 248 40.7
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 8.5e-26 122.5 293 38.2
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.9e-25 121.3 153 48.4
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 5.1e-23 113.2 245 36.3
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 5.1e-23 113.2 302 33.8
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 2.5e-22 110.9 141 51.1
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 3.3e-22 110.5 205 42.9
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 7.4e-22 109.4 204 40.2
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 7.4e-22 109.4 91 65.9
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.3e-21 108.6 292 30.5
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.1e-20 105.5 351 29.1
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.8e-20 104.8 82 64.6
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.5e-19 100.1 150 46.0
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.2e-18 97.8 448 26.3
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.2e-18 97.8 94 58.5
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.2e-16 92.0 62 80.6
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.3e-10 72.0 57 73.7
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.0e-07 62.4 83 47.0
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 3.9e-07 60.5 270 26.3


User provided reference genes

Program Settings