Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 6.6e-249 863.6 448 100.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 6.6e-180 634.4 450 73.6
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.1e-170 602.8 448 69.9
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.4e-153 547.0 439 67.2
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 4.9e-127 458.8 501 52.5
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 2.4e-113 413.3 443 52.8
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 2.6e-112 409.8 462 52.6
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.0e-111 407.9 439 50.6
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 8.4e-111 404.8 461 52.5
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.1e-107 394.4 466 50.9
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 9.7e-107 391.3 463 51.8
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.6e-106 390.6 472 50.0
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 7.7e-104 381.7 475 49.1
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.9e-103 379.8 454 49.3
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.9e-103 379.8 465 49.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.9e-103 379.8 465 49.2
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.9e-103 379.8 473 47.8
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.9e-102 377.1 454 50.2
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 2.5e-102 376.7 472 48.9
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 5.5e-102 375.6 468 47.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 9.4e-102 374.8 452 50.2
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.1e-101 373.6 461 49.5
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.3e-100 370.2 458 50.0
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 6.7e-100 368.6 471 48.8
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 8.8e-100 368.2 474 47.3
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.5e-99 367.5 472 47.9
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 2.5e-99 366.7 463 49.0
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.5e-99 366.7 454 50.2
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.2e-98 363.6 459 49.0
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 6.3e-98 362.1 474 46.6
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.3e-98 362.1 464 47.2
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 8.2e-98 361.7 457 49.5
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.1e-97 361.3 469 47.8
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.8e-97 360.5 464 47.0
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.8e-97 360.5 492 44.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 5.3e-97 359.0 467 48.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.2e-96 357.8 474 48.5
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.4e-96 356.3 479 46.8
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.4e-96 356.3 464 49.1
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.5e-96 355.9 477 46.3
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 4.5e-96 355.9 466 48.1
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 5.9e-96 355.5 467 46.5
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 7.7e-96 355.1 443 49.0
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 7.7e-96 355.1 468 45.9
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 7.7e-96 355.1 478 45.2
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.0e-95 354.8 457 48.1
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.7e-95 354.0 461 46.9
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 2.2e-95 353.6 479 47.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.1e-94 351.3 458 48.7
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.1e-94 351.3 458 48.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.5e-94 350.1 484 45.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.5e-94 350.1 468 46.2
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 9.4e-94 348.2 448 46.0
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.2e-93 347.8 456 47.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.7e-93 346.7 469 48.2
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.7e-93 346.7 380 49.2
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.7e-93 345.9 460 45.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.1e-93 345.5 464 47.0
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 3.0e-92 343.2 466 45.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.0e-92 343.2 455 46.2
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 5.1e-92 342.4 468 46.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 6.7e-92 342.0 465 45.8
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.5e-91 340.9 452 46.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.5e-91 340.9 516 42.6
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.6e-91 340.1 458 46.5
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.4e-91 339.3 473 44.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 7.4e-91 338.6 461 45.3
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 9.7e-91 338.2 469 45.8
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.7e-90 337.4 390 49.2
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 6.3e-90 335.5 480 44.4
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.8e-89 334.0 463 46.2
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.1e-89 332.8 468 44.2
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-88 330.9 377 48.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.0e-87 328.2 468 42.3
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.9e-87 326.6 455 46.4
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.9e-87 326.6 455 47.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.8e-87 326.2 474 43.2
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.0e-87 325.9 455 47.0
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.1e-86 324.7 385 48.8
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.1e-86 324.7 403 46.2
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-86 324.7 397 44.8
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.5e-86 323.6 305 57.4
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 4.2e-86 322.8 418 43.3
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 5.5e-86 322.4 456 45.8
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 9.4e-86 321.6 468 43.8
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.7e-85 319.3 449 42.8
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 6.1e-85 318.9 373 46.9
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.4e-84 317.8 474 41.6
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.4e-84 317.8 428 43.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.0e-84 316.6 488 43.9
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.4e-83 312.8 447 42.1
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 7.4e-83 312.0 414 45.4
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.2e-82 310.5 347 49.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.8e-82 310.1 476 42.2
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 6.3e-82 308.9 523 40.2
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.1e-81 308.1 469 42.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.8e-81 307.4 459 41.2
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.8e-81 307.4 449 41.9
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.8e-81 307.4 338 48.2
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.1e-81 306.6 472 42.6
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 3.1e-81 306.6 474 42.4
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 9.1e-81 305.1 467 40.3
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 9.1e-81 305.1 604 36.3
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.6e-80 303.5 469 43.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.6e-80 303.5 467 42.0
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.5e-80 302.8 476 41.8
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.0e-79 301.6 463 43.4
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.3e-79 301.2 452 43.8
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.7e-79 300.8 460 41.5
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.2e-79 300.4 470 43.2
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 5.0e-79 299.3 470 43.0
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 8.5e-79 298.5 469 42.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.1e-78 298.1 466 40.1
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.5e-78 297.7 477 43.0
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.9e-78 297.4 473 39.5
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 7.2e-78 295.4 370 46.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.6e-77 293.1 467 42.2
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 3.6e-77 293.1 484 39.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.1e-77 292.4 367 44.7
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.0e-77 292.0 470 40.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.3e-76 290.4 471 40.8
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.3e-76 290.4 366 43.2
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.0e-76 290.0 470 40.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.6e-75 287.0 439 39.9
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.7e-75 285.8 337 47.8
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.7e-74 284.3 403 43.2
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.8e-74 283.5 428 44.9
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.4e-73 281.2 460 38.9
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.8e-71 273.1 470 38.7
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-70 271.6 283 52.3
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.4e-68 264.6 314 46.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.3e-68 263.8 365 42.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-63 248.1 376 41.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 8.6e-63 245.4 369 41.5
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 5.5e-62 242.7 369 42.5
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.8e-60 237.7 249 52.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.8e-60 237.7 366 39.9
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 2.0e-59 234.2 420 39.0
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 9.8e-59 231.9 318 44.0
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.3e-58 231.5 376 41.2
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.8e-58 230.3 317 41.3
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.9e-58 229.6 214 58.4
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 8.3e-58 228.8 358 41.1
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 8.3e-58 228.8 317 41.3
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 3.5e-56 223.4 376 38.3
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 4.5e-56 223.0 449 35.0
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.1e-54 218.4 449 37.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.1e-54 218.4 305 41.0
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 3.3e-54 216.9 377 40.1
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.4e-52 211.5 465 35.5
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.2e-51 208.4 314 40.4
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.0e-51 207.6 292 39.4
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 5.0e-47 193.0 145 65.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 1.6e-45 188.0 323 37.2
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 4.7e-45 186.4 241 42.7
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.5e-43 181.4 204 49.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.9e-42 176.4 262 43.5
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.9e-41 174.5 301 36.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 4.1e-41 173.3 211 46.9
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.6e-40 171.4 394 31.7
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 3.0e-39 167.2 374 33.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 8.6e-39 165.6 291 40.2
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.9e-34 150.6 339 34.8
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 4.6e-32 143.3 137 53.3
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.7e-31 141.4 169 49.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.6e-29 133.7 103 68.0
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.3e-26 125.2 195 40.0
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.9e-23 113.6 192 38.5
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 8.7e-23 112.5 190 36.8
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.1e-20 105.5 94 56.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.9e-17 94.7 175 37.7
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.7e-15 88.2 63 69.8
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 4.3e-14 83.6 84 56.0
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.1e-13 81.3 82 52.4
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.6e-13 80.5 80 56.2
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.3e-10 72.0 57 64.9
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.2e-08 65.5 124 33.1
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 4.3e-06 57.0 52 59.6


User provided reference genes

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