Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold181G39784 Striga asiatica HOM05D017978 ORTHO05D010595 1.5e-214 749.2 360 100.0
SGA_v2.0_scaffold181G39793 Striga asiatica HOM05D017978 ORTHO05D010595 6.4e-77 292.0 387 48.1
SGA_v2.0_scaffold181G39796 Striga asiatica HOM05D017978 ORTHO05D010595 4.0e-71 272.7 393 45.8
SGA_v2.0_scaffold181G39794 Striga asiatica HOM05D017978 ORTHO05D010595 5.8e-62 242.3 375 43.2
SGA_v2.0_scaffold130G34213 Striga asiatica HOM05D030202 ORTHO05D010595 5.9e-46 189.1 276 41.7
SGA_v2.0_scaffold1G00250 Striga asiatica HOM05D011185 ORTHO05D010595 1.3e-42 177.9 355 35.5
SGA_v2.0_scaffold1G00255 Striga asiatica HOM05D011185 ORTHO05D010595 1.3e-42 177.9 372 35.5
SGA_v2.0_scaffold1G00248 Striga asiatica HOM05D011185 ORTHO05D010595 1.4e-39 167.9 365 35.9
SGA_v2.0_scaffold1G00259 Striga asiatica HOM05D011185 ORTHO05D010595 4.8e-32 142.9 263 36.1
SGA_v2.0_scaffold20G09149 Striga asiatica HOM05D011185 ORTHO05D010595 1.8e-31 141.0 293 35.5
SGA_v2.0_scaffold24G10254 Striga asiatica HOM05D011185 ORTHO05D010595 1.0e-29 135.2 319 33.5
SGA_v2.0_scaffold8G04360 Striga asiatica HOM05D011185 ORTHO05D010595 6.5e-29 132.5 284 37.0
SGA_v2.0_scaffold117G32318 Striga asiatica HOM05D011185 ORTHO05D010595 1.6e-27 127.9 281 36.3
SGA_v2.0_scaffold366G50043 Striga asiatica HOM05D011185 ORTHO05D010595 2.7e-27 127.1 258 36.4
SGA_v2.0_scaffold40G15638 Striga asiatica HOM05D011185 ORTHO05D010595 4.7e-27 126.3 254 36.2
SGA_v2.0_scaffold131G34426 Striga asiatica HOM05D000096 ORTHO05D010595 6.7e-26 122.5 229 35.8
SGA_v2.0_scaffold40G15666 Striga asiatica HOM05D011185 ORTHO05D010595 6.7e-26 122.5 260 36.5
SGA_v2.0_scaffold100G29617 Striga asiatica HOM05D012911 ORTHO05D010595 1.1e-25 121.7 274 32.1
SGA_v2.0_scaffold100G29614 Striga asiatica HOM05D012911 ORTHO05D010595 5.7e-25 119.4 283 32.5
SGA_v2.0_scaffold152G36797 Striga asiatica HOM05D011185 ORTHO05D010595 9.7e-25 118.6 323 31.3
SGA_v2.0_scaffold100G29621 Striga asiatica HOM05D012911 ORTHO05D010595 1.6e-22 111.3 243 32.5
SGA_v2.0_scaffold7G04003 Striga asiatica HOM05D012911 ORTHO05D010595 1.6e-22 111.3 218 34.9
SGA_v2.0_scaffold181G39785 Striga asiatica HOM05D017978 ORTHO05D010595 5.9e-22 109.4 125 53.6
SGA_v2.0_scaffold90G27929 Striga asiatica HOM05D012724 ORTHO05D010595 6.5e-21 105.9 238 31.9
SGA_v2.0_scaffold100G29662 Striga asiatica HOM05D012911 ORTHO05D010595 1.9e-20 104.4 207 35.3
SGA_v2.0_scaffold181G39791 Striga asiatica HOM05D011185 ORTHO05D010595 5.5e-20 102.8 281 31.3
SGA_v2.0_scaffold89G27539 Striga asiatica HOM05D011185 ORTHO05D010595 6.1e-19 99.4 281 29.5
AUR62017742 Chenopodium quinoa HOM05D000007 ORTHO05D000039 1.7e-16 91.3 232 28.9
SGA_v2.0_scaffold16G07514 Striga asiatica HOM05D012911 ORTHO05D010595 2.8e-16 90.5 243 29.6
AUR62032927 Chenopodium quinoa HOM05D000007 ORTHO05D000039 4.8e-16 89.7 237 28.3
SGA_v2.0_scaffold7G03853 Striga asiatica HOM05D012911 ORTHO05D010595 6.3e-16 89.4 264 29.9
SGA_v2.0_scaffold90G27927 Striga asiatica HOM05D012724 ORTHO05D010595 1.1e-15 88.6 258 29.5
SGA_v2.0_scaffold186G40188 Striga asiatica HOM05D000007 ORTHO05D010595 1.8e-15 87.8 295 27.1
SGA_v2.0_scaffold7G03555 Striga asiatica HOM05D012911 ORTHO05D010595 4.1e-15 86.7 283 26.9
Gohir.D10G123400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 5.3e-15 86.3 232 28.4
TWI34G1066 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.2e-14 85.1 256 27.3
Gorai.011G136300 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.6e-14 84.7 226 29.6
AUR62031045 Chenopodium quinoa HOM05D000007 ORTHO05D000039 2.0e-14 84.3 227 29.1
Ah.01g006770 Amaranthus hybridus HOM05D000007 ORTHO05D000039 2.7e-14 84.0 246 28.5
QL03p023798 Quercus lobata HOM05D000007 ORTHO05D000039 4.5e-14 83.2 236 26.3
QL03p023874 Quercus lobata HOM05D000007 ORTHO05D000039 4.5e-14 83.2 236 26.3
SGA_v2.0_scaffold7G03939 Striga asiatica HOM05D012911 ORTHO05D010595 1.7e-13 81.3 225 28.4
EL10Ac9g22770 Beta vulgaris HOM05D000007 ORTHO05D000039 3.8e-13 80.1 242 26.4
CAN.G723.19 Capsicum annuum HOM05D000007 ORTHO05D000039 3.8e-13 80.1 238 30.3
QL08p040501 Quercus lobata HOM05D000007 ORTHO05D000039 2.5e-12 77.4 246 24.0
Lj2C989T8 Lonicera japonica HOM05D000007 ORTHO05D000039 3.2e-12 77.0 260 27.7
Lj2C989T3 Lonicera japonica HOM05D000007 ORTHO05D000039 1.2e-11 75.1 259 25.9
Peaxi162Scf00658g00067 Petunia axillaris HOM05D000007 ORTHO05D000039 2.1e-11 74.3 263 28.1
Thecc.04G089800 Theobroma cacao HOM05D000007 ORTHO05D000039 2.1e-11 74.3 294 25.2
Dinv05355 Davidia involucrata HOM05D000007 ORTHO05D000039 2.7e-11 73.9 246 25.2
Glyma.19G081500 Glycine max HOM05D000007 ORTHO05D000039 2.7e-11 73.9 245 23.7
Dinv21276 Davidia involucrata HOM05D000007 ORTHO05D000039 3.6e-11 73.6 248 26.2
CiPaw.03G182200 Carya illinoinensis HOM05D000007 ORTHO05D000039 6.1e-11 72.8 264 25.0
Cfa007560 Carpinus fangiana HOM05D000007 ORTHO05D000039 8.0e-11 72.4 237 23.2
COL.COLO4_23737 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.0e-10 72.0 237 27.0
Cfa007606 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.8e-10 71.2 229 23.6
arahy.Tifrunner.gnm1.ann1.L34NFV Arachis hypogaea HOM05D000007 ORTHO05D000039 2.3e-10 70.9 266 24.4
Dinv34982 Davidia involucrata HOM05D000007 ORTHO05D000039 2.3e-10 70.9 254 26.8
FvH4_6g06831 Fragaria vesca HOM05D000007 ORTHO05D000039 2.3e-10 70.9 239 26.4
Glyma.16G063600 Glycine max HOM05D000007 ORTHO05D000039 2.3e-10 70.9 256 24.2
Oeu025158.1 Olea europaea HOM05D000007 ORTHO05D000039 2.3e-10 70.9 226 27.4
QL07p003496 Quercus lobata HOM05D000007 ORTHO05D000039 2.3e-10 70.9 274 24.5
SalBow6G4842 Salvia bowleyana HOM05D012950 ORTHO05D000017 2.3e-10 70.9 243 28.8
Cfa007545 Carpinus fangiana HOM05D000007 ORTHO05D000039 3.0e-10 70.5 227 26.4
Haze_10070 Corylus avellana HOM05D000007 ORTHO05D000039 4.0e-10 70.1 244 23.0
Potri.006G170300 Populus trichocarpa HOM05D000007 ORTHO05D000039 4.0e-10 70.1 240 26.7
Dinv34983 Davidia involucrata HOM05D000007 ORTHO05D000039 5.2e-10 69.7 256 28.1
VMungo1383G2008 Vigna mungo HOM05D000007 ORTHO05D000039 6.8e-10 69.3 257 23.3
Cfa007611 Carpinus fangiana HOM05D000007 ORTHO05D000039 8.8e-10 68.9 233 24.5
Dinv34988 Davidia involucrata HOM05D000007 ORTHO05D000039 1.2e-09 68.6 233 27.9
Duzib187G1873 Durio zibethinus HOM05D000007 ORTHO05D000039 1.2e-09 68.6 263 25.9
Oeu028341.1 Olea europaea HOM05D000007 ORTHO05D000039 1.2e-09 68.6 228 25.9
QL02p078646 Quercus lobata HOM05D000007 ORTHO05D000039 1.2e-09 68.6 235 26.4
SGA_v2.0_scaffold1G00265 Striga asiatica HOM05D017978 ORTHO05D010595 1.2e-09 68.6 113 38.9
RcHm_v2.0_Chr2g0111681 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-09 68.2 223 24.7
FAN14G0731 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.6e-09 67.4 259 23.9
Lj1g0005691 Lotus japonicus HOM05D000007 ORTHO05D000039 2.6e-09 67.4 259 21.6
Oeu025157.1 Olea europaea HOM05D000007 ORTHO05D000039 2.6e-09 67.4 156 31.4
Lj1P655T32 Lonicera japonica HOM05D000007 ORTHO05D000039 3.4e-09 67.0 248 23.8
Haze_02867 Corylus avellana HOM05D000007 ORTHO05D000039 5.7e-09 66.2 168 30.4
Medtr0831s0010 Medicago truncatula HOM05D000007 ORTHO05D000039 5.7e-09 66.2 287 25.8
Sopen00g010140 Solanum pennellii HOM05D000007 ORTHO05D000039 5.7e-09 66.2 253 24.1
Glyma.16G163966 Glycine max HOM05D000007 ORTHO05D000017 7.5e-09 65.9 131 30.5
Medtr6g060650 Medicago truncatula HOM05D000007 ORTHO05D000017 7.5e-09 65.9 228 26.8
RcHm_v2.0_Chr3g0461521 Rosa chinensis HOM05D003032 ORTHO05D003456 7.5e-09 65.9 380 24.2
PGSC0003DMG400039355 Solanum tuberosum HOM05D000007 ORTHO05D000039 7.5e-09 65.9 231 25.1
C03p08330 Brassica napus HOM05D000007 ORTHO05D000017 9.8e-09 65.5 248 23.8
Dinv06511 Davidia involucrata HOM05D000007 ORTHO05D000039 9.8e-09 65.5 238 28.2
PGR042G2235 Punica granatum HOM05D000007 ORTHO05D000039 9.8e-09 65.5 237 26.2
Rhsim05G0077300 Rhododendron simsii HOM05D000007 ORTHO05D013648 9.8e-09 65.5 251 24.3
ECA238G4075 Erigeron canadensis HOM05D000007 ORTHO05D000017 1.3e-08 65.1 244 27.0
FvH4_6g06760 Fragaria vesca HOM05D000007 ORTHO05D000039 1.3e-08 65.1 279 24.4
Peaxi162Scf00290g00102 Petunia axillaris HOM05D000007 ORTHO05D000039 1.3e-08 65.1 244 28.3
BolC3t13339H Brassica oleracea HOM05D000007 ORTHO05D000017 1.7e-08 64.7 254 23.2
Potri.005G114900 Populus trichocarpa HOM05D000007 ORTHO05D000039 1.7e-08 64.7 235 26.0
QL05p069384 Quercus lobata HOM05D000007 ORTHO05D000017 1.7e-08 64.7 247 26.7
RcHm_v2.0_Chr2g0154581 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-08 64.7 256 22.7
SGA_v2.0_scaffold25G11177 Striga asiatica HOM05D017978 ORTHO05D010595 1.7e-08 64.7 107 43.9
CiPaw.03G025900 Carya illinoinensis HOM05D000007 ORTHO05D000039 2.2e-08 64.3 246 22.8
Haze_07681 Corylus avellana HOM05D000007 ORTHO05D000039 2.8e-08 63.9 215 24.2
Dinv19775 Davidia involucrata HOM05D000007 ORTHO05D000039 2.8e-08 63.9 242 26.0
VMungo1215G3363 Vigna mungo HOM05D000007 ORTHO05D000017 2.8e-08 63.9 228 25.9
Peaxi162Scf00700g00332 Petunia axillaris HOM05D000007 ORTHO05D000039 3.7e-08 63.5 248 25.8
Gohir.D12G088200 Gossypium hirsutum HOM05D000007 ORTHO05D000039 4.8e-08 63.2 272 24.6
Medtr4g102410 Medicago truncatula HOM05D000007 ORTHO05D000039 4.8e-08 63.2 276 24.6
Peaxi162Scf00700g00039 Petunia axillaris HOM05D000007 ORTHO05D000039 4.8e-08 63.2 242 26.0
TWI14G1098 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 4.8e-08 63.2 261 26.4
Solyc04g063415.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 6.3e-08 62.8 253 24.1
Solyc04g064440.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 6.3e-08 62.8 253 24.1
FAN02G3293 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.3e-08 62.4 146 31.5
PGR083G2787 Punica granatum HOM05D000007 ORTHO05D000017 8.3e-08 62.4 274 25.2
Lsat_1_v5_gn_3_49661 Lactuca sativa HOM05D000007 ORTHO05D000039 1.1e-07 62.0 236 25.8
Lalb_Chr24g0400961 Lupinus albus HOM05D000007 ORTHO05D000039 1.1e-07 62.0 187 31.6
Peaxi162Scf00700g00311 Petunia axillaris HOM05D000007 ORTHO05D000039 1.1e-07 62.0 251 25.1
BraA03t10048Z Brassica rapa HOM05D000600 ORTHO05D000432 1.4e-07 61.6 246 22.8
Dinv24586 Davidia involucrata HOM05D000007 ORTHO05D000039 1.4e-07 61.6 233 24.9
Lsat_1_v5_gn_5_87981 Lactuca sativa HOM05D000007 ORTHO05D000039 1.4e-07 61.6 185 29.2
Nitab4.5_0005962g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.4e-07 61.6 247 25.5
SGA_v2.0_scaffold130G34211 Striga asiatica HOM05D030202 ORTHO05D403157 1.4e-07 61.6 85 37.6
TPR.G16362 Trifolium pratense HOM05D000007 ORTHO05D000039 1.4e-07 61.6 243 20.2
Cfa007561 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.8e-07 61.2 220 28.2
Hma1.2p1_0901F.1_g234670 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.8e-07 61.2 263 25.5
Hma1.2p1_0901F.1_g234685 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.8e-07 61.2 263 25.5
Hma1.2p1_1150F.1_g261840 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.8e-07 61.2 263 25.5
Lj3P969T40 Lonicera japonica HOM05D000007 ORTHO05D000017 1.8e-07 61.2 236 25.8
Lj1g0005950 Lotus japonicus HOM05D000007 ORTHO05D000039 1.8e-07 61.2 237 19.8
Phvul.009G054900 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 2.4e-07 60.8 176 25.0
Prupe.6G319000 Prunus persica HOM05D000007 ORTHO05D000039 2.4e-07 60.8 248 25.0
FvH4_6g06840 Fragaria vesca HOM05D000007 ORTHO05D000039 3.1e-07 60.5 250 24.0
Lj1g0004080 Lotus japonicus HOM05D000007 ORTHO05D000039 3.1e-07 60.5 236 19.5
Potri.017G012200 Populus trichocarpa HOM05D000007 ORTHO05D000039 3.1e-07 60.5 241 24.9
Lj1P794T16 Lonicera japonica HOM05D000007 ORTHO05D000039 4.1e-07 60.1 232 27.2
Medtr7g079370 Medicago truncatula HOM05D000007 ORTHO05D000017 4.1e-07 60.1 235 23.4
A03p07260 Brassica napus HOM05D000600 ORTHO05D000432 5.4e-07 59.7 254 24.4
BraA03t10047Z Brassica rapa HOM05D000007 ORTHO05D000017 5.4e-07 59.7 248 23.4
Haze_14522 Corylus avellana HOM05D000007 ORTHO05D000039 5.4e-07 59.7 228 26.8
Hma1.2p1_0036F.1_g023680 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 5.4e-07 59.7 295 22.7
QL02p081705 Quercus lobata HOM05D000007 ORTHO05D000039 5.4e-07 59.7 242 23.6
TWI79G1037 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 5.4e-07 59.7 237 23.2
Nitab4.5_0000174g0080 Nicotiana tabacum HOM05D000007 ORTHO05D000039 7.0e-07 59.3 228 26.8
CANSAT80G2098 Cannabis sativa HOM05D000007 ORTHO05D000017 9.1e-07 58.9 253 26.9
Prupe.6G318300 Prunus persica HOM05D000007 ORTHO05D000039 9.1e-07 58.9 194 23.7
COL.COLO4_23744 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.2e-06 58.5 264 25.0
QL08p040393 Quercus lobata HOM05D000007 ORTHO05D000039 1.2e-06 58.5 229 24.0
RcHm_v2.0_Chr3g0456241 Rosa chinensis HOM05D000007 ORTHO05D000039 1.2e-06 58.5 240 25.8
BcaB01g05040 Brassica carinata HOM05D000007 ORTHO05D000017 1.6e-06 58.2 248 25.4
CiPaw.07G038000 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.6e-06 58.2 224 27.2
Haze_13248 Corylus avellana HOM05D000029 ORTHO05D001395 1.6e-06 58.2 243 21.8
Haze_13252 Corylus avellana HOM05D000007 ORTHO05D000039 1.6e-06 58.2 208 25.0
Eucgr.H02734 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.6e-06 58.2 207 25.6
vmacro05613 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 1.6e-06 58.2 174 27.6
Ciclev10006809m.g Citrus clementina HOM05D000007 ORTHO05D000017 2.0e-06 57.8 258 22.9
SGA_v2.0_scaffold130G34210 Striga asiatica HOM05D030202 ORTHO05D404626 2.0e-06 57.8 143 32.2
MSTRG.15075 Avicennia marina HOM05D000007 ORTHO05D000039 2.7e-06 57.4 262 24.0
QL11p009377 Quercus lobata HOM05D000007 ORTHO05D000017 2.7e-06 57.4 106 34.0
SGA_v2.0_scaffold39G15154 Striga asiatica HOM05D012724 ORTHO05D010595 2.7e-06 57.4 83 38.6
TPR.G29653 Trifolium pratense HOM05D000007 ORTHO05D000017 2.7e-06 57.4 232 25.0
Cfa004506 Carpinus fangiana HOM05D000257 ORTHO05D004041 3.5e-06 57.0 209 25.8
FAN15G1935 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.5e-06 56.6 187 26.7
Peaxi162Scf00074g00039 Petunia axillaris HOM05D000007 ORTHO05D000039 5.9e-06 56.2 268 26.9
QL03p024057 Quercus lobata HOM05D000007 ORTHO05D000039 5.9e-06 56.2 267 22.1
SGA_v2.0_scaffold90G27931 Striga asiatica HOM05D012724 ORTHO05D010595 5.9e-06 56.2 134 33.6
CSS0030420 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000676 7.7e-06 55.8 165 27.9
COL.COLO4_06115 Corchorus olitorius HOM05D000007 ORTHO05D000017 7.7e-06 55.8 178 25.8
FAN25G3524 Fragaria x ananassa HOM05D000007 ORTHO05D005026 7.7e-06 55.8 235 25.1
Peaxi162Scf00608g00048 Petunia axillaris HOM05D000007 ORTHO05D000039 7.7e-06 55.8 241 24.9
Psat7g148960 Pisum sativum HOM05D000007 ORTHO05D000039 7.7e-06 55.8 266 22.6


User provided reference genes

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