Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.5e-167 592.8 298 100.0
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.4e-85 320.5 436 46.6
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.7e-78 295.8 352 50.3
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 5.0e-75 285.4 453 42.2
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 9.4e-74 281.2 243 62.6
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 3.6e-73 279.3 458 40.6
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.5e-71 273.9 507 38.5
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 7.4e-71 271.6 457 40.0
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.2e-70 270.0 428 40.9
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.8e-70 269.6 456 40.1
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.8e-70 269.6 456 40.1
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 3.7e-70 269.2 456 39.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 8.2e-70 268.1 457 39.6
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.4e-69 267.3 456 39.5
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 2.4e-69 266.5 456 39.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 4.1e-69 265.8 458 37.8
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.9e-69 265.0 456 39.7
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 6.9e-69 265.0 457 38.9
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 9.1e-69 264.6 458 39.3
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 9.1e-69 264.6 424 41.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.2e-68 264.2 458 38.4
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.0e-68 263.5 479 38.6
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.4e-68 262.7 458 38.9
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 3.4e-68 262.7 454 39.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.9e-68 261.9 459 39.0
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 5.9e-68 261.9 416 40.9
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 5.9e-68 261.9 456 38.6
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.7e-67 260.4 459 39.0
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 6.5e-67 258.5 426 39.9
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.5e-67 258.5 459 38.6
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.4e-66 257.3 453 38.9
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.4e-66 257.3 453 38.9
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.9e-66 256.9 457 38.5
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.2e-66 256.1 453 38.6
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.2e-66 256.1 458 38.0
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 4.2e-66 255.8 463 37.8
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 4.2e-66 255.8 461 37.5
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.7e-65 253.1 245 56.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.7e-65 253.1 456 37.1
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.6e-65 252.7 238 58.0
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.1e-65 251.9 458 37.6
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.1e-65 251.9 458 37.6
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.4e-64 250.8 458 38.2
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 2.3e-64 250.0 458 38.0
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 3.9e-64 249.2 452 37.4
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 5.2e-64 248.8 458 37.3
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 6.7e-64 248.4 458 37.1
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 8.8e-64 248.1 451 37.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 8.8e-64 248.1 455 36.7
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 8.8e-64 248.1 458 37.3
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 8.8e-64 248.1 458 37.3
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.1e-63 247.7 458 36.2
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.1e-63 247.7 457 37.6
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.1e-63 247.7 457 36.3
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.5e-63 247.3 455 37.1
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.5e-63 247.3 455 37.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.6e-63 246.5 459 37.0
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.6e-63 246.5 456 37.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.6e-63 246.5 458 36.5
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.6e-63 246.5 457 36.5
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.6e-63 246.5 458 36.7
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 5.7e-63 245.4 458 35.8
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.3e-62 244.2 457 35.4
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.3e-62 244.2 458 36.2
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-62 244.2 458 36.7
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 2.2e-62 243.4 453 36.9
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.7e-62 242.7 458 35.4
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 4.8e-62 242.3 457 36.3
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 6.3e-62 241.9 446 36.8
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 6.3e-62 241.9 453 36.0
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 6.3e-62 241.9 454 36.8
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 8.2e-62 241.5 255 53.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 8.2e-62 241.5 454 36.3
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 1.4e-61 240.7 456 37.1
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.4e-61 240.7 457 36.1
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-61 240.4 291 49.1
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.1e-61 239.6 435 38.6
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 4.1e-61 239.2 457 36.1
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 5.3e-61 238.8 291 48.5
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.1e-61 238.0 446 36.1
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 9.1e-61 238.0 447 36.0
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.2e-60 237.7 427 36.5
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.6e-60 236.5 450 35.8
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 2.6e-60 236.5 235 54.5
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 2.6e-60 236.5 456 35.7
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 3.5e-60 236.1 255 51.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 4.5e-60 235.7 458 36.9
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 4.5e-60 235.7 446 36.1
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 7.7e-60 235.0 446 36.1
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.0e-59 234.6 445 36.0
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.0e-59 234.6 291 48.1
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.7e-59 233.8 446 35.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 2.2e-59 233.4 445 36.0
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 2.2e-59 233.4 445 36.0
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 8.5e-59 231.5 445 35.7
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 8.5e-59 231.5 446 35.2
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.5e-58 229.9 446 35.9
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 3.2e-58 229.6 245 53.5
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 9.4e-58 228.0 267 47.9
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 4.7e-57 225.7 274 47.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.0e-56 224.6 238 51.3
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.0e-56 223.0 444 36.0
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.0e-56 222.6 400 36.8
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.0e-55 220.3 272 46.3
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.6e-55 219.9 398 36.7
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.8e-54 215.7 417 37.2
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.1e-53 214.5 396 38.1
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 1.2e-52 211.1 235 49.4
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 5.9e-52 208.8 242 49.6
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 6.5e-51 205.3 420 32.6
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 8.5e-51 204.9 233 49.8
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.5e-50 204.1 233 49.4
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.0e-48 198.0 321 38.6
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.0e-48 198.0 306 43.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.4e-48 197.6 389 35.2
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 9.8e-47 191.4 255 48.2
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 4.8e-46 189.1 228 43.9
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 9.1e-45 184.9 325 36.3
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 9.1e-45 184.9 323 35.6
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.9e-43 179.9 240 42.9
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.8e-43 179.5 317 36.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 5.0e-43 179.1 168 54.2
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 6.5e-43 178.7 234 43.2
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 2.5e-42 176.8 327 34.6
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.6e-41 172.9 167 52.1
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.6e-35 152.1 85 80.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.6e-35 152.1 85 80.0
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.9e-34 150.6 85 77.6
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 6.8e-32 142.1 130 56.2
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.2e-30 137.1 144 52.1
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.3e-27 127.9 231 36.4
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.6e-27 125.2 87 64.4
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.0e-24 118.2 282 29.4
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.9e-22 110.2 213 33.3
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.4e-21 107.8 114 42.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.7e-20 103.6 158 42.4
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.0e-19 99.4 57 75.4
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 6.8e-16 89.0 227 31.7
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 8.3e-14 82.0 94 45.7
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-13 81.3 46 82.6
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.7e-12 77.0 46 73.9
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 4.6e-12 76.3 97 49.5
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.3e-11 73.9 46 73.9
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.5e-10 71.2 97 45.4
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-09 68.2 54 68.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.1e-08 65.1 49 65.3
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.2e-08 62.8 34 85.3
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.3e-06 58.2 34 82.4
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.7e-06 57.8 34 82.4
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 3.8e-06 56.6 93 39.8


User provided reference genes

Program Settings