Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 2.8e-153 545.4 311 100.0
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 7.1e-117 424.5 311 74.3
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 8.5e-110 401.0 313 74.8
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 7.2e-109 397.9 311 74.9
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 9.4e-109 397.5 312 76.6
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.2e-108 397.1 313 75.7
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.6e-108 396.7 311 73.6
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 2.1e-108 396.4 313 73.2
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 4.6e-108 395.2 313 72.5
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 3.0e-107 392.5 310 74.8
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.3e-106 389.0 313 75.4
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 5.7e-106 388.3 310 74.2
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 5.7e-106 388.3 310 71.6
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 9.7e-106 387.5 313 75.4
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.8e-105 386.0 314 74.8
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.4e-104 383.6 312 64.1
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.8e-104 383.3 313 70.6
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 3.1e-104 382.5 311 74.3
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.1e-104 382.5 317 74.1
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 6.9e-104 381.3 312 63.1
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 9.1e-104 380.9 312 73.7
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.2e-103 380.6 311 71.4
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.2e-103 380.6 310 71.0
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.5e-103 380.2 312 73.4
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.5e-103 380.2 319 61.4
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.6e-103 379.4 319 74.6
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.6e-103 379.4 312 75.3
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.5e-103 378.6 326 67.5
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 5.9e-103 378.3 313 71.6
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 7.7e-103 377.9 312 68.3
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.0e-102 377.5 315 72.4
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.4e-101 373.6 312 73.4
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 3.2e-101 372.5 313 70.9
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.2e-101 372.5 313 68.7
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 4.2e-101 372.1 305 63.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 1.6e-100 370.2 314 64.3
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.7e-100 369.4 314 64.6
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 3.6e-100 369.0 317 60.3
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 4.7e-100 368.6 310 70.3
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 6.1e-100 368.2 314 71.7
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 7.9e-100 367.9 318 61.3
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.0e-99 367.5 315 72.4
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.4e-99 367.1 314 64.3
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.3e-99 366.3 313 74.1
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.9e-99 365.5 314 64.0
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 5.1e-99 365.2 312 66.0
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 5.1e-99 365.2 311 73.0
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 6.7e-99 364.8 311 68.5
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 8.8e-99 364.4 314 63.7
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 3.3e-98 362.5 311 71.4
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 5.7e-98 361.7 311 73.6
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 7.4e-98 361.3 313 71.9
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 9.7e-98 360.9 310 62.6
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 3.7e-97 359.0 311 73.3
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 6.3e-97 358.2 314 61.1
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 6.3e-97 358.2 326 69.9
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 1.1e-96 357.5 313 70.3
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.4e-96 357.1 315 65.1
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.4e-96 357.1 312 60.9
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.8e-96 356.7 312 61.2
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 4.1e-96 355.5 314 67.5
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 9.1e-96 354.4 313 71.9
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.5e-95 353.6 314 59.9
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.6e-95 352.8 315 72.7
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 5.9e-95 351.7 320 65.9
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.3e-94 350.5 313 68.1
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.7e-94 350.1 318 66.0
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 2.9e-94 349.4 341 54.8
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 6.5e-94 348.2 344 67.4
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 6.5e-94 348.2 311 60.5
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 8.5e-94 347.8 289 70.9
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 5.5e-93 345.1 314 61.8
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.6e-92 343.6 345 54.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.6e-92 343.6 314 58.9
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.1e-92 341.7 314 58.9
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.0e-91 340.9 312 58.7
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 6.7e-91 338.2 313 70.3
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-90 337.4 312 66.3
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.5e-90 337.0 317 60.3
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.6e-90 336.3 326 66.0
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 9.7e-90 334.3 325 65.8
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.3e-89 334.0 294 73.5
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.8e-89 332.8 312 57.4
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 6.3e-89 331.6 357 58.0
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 6.3e-89 331.6 357 58.0
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.2e-87 327.4 265 74.0
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.0e-86 324.3 312 57.7
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 6.5e-86 321.6 274 70.8
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 8.5e-86 321.2 310 56.1
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.1e-85 320.9 287 70.0
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.6e-84 317.0 287 71.4
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 6.8e-83 311.6 313 67.7
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.5e-82 310.5 313 66.5
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.4e-82 309.3 289 71.6
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 4.4e-82 308.9 349 57.9
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 4.4e-82 308.9 349 57.9
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 3.7e-81 305.8 316 50.9
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.8e-80 303.5 317 62.5
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 5.3e-80 302.0 312 53.2
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 7.0e-80 301.6 268 70.9
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 5.0e-78 295.4 312 53.5
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.5e-77 293.9 213 80.3
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.5e-77 293.1 330 57.0
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.2e-76 290.8 262 72.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.7e-76 288.9 262 72.1
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 4.4e-74 282.3 213 78.9
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 4.4e-74 282.3 263 57.4
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.4e-72 277.3 267 56.2
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 3.5e-71 272.7 236 60.6
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 3.8e-70 269.2 247 71.7
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.2e-65 253.4 277 52.0
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.2e-65 253.4 189 85.2
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 4.1e-64 249.2 239 69.5
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 7.0e-64 248.4 301 48.5
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.5e-63 246.1 239 68.6
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 4.6e-63 245.7 238 57.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.3e-62 244.2 239 71.5
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.1e-61 241.1 242 71.1
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-61 241.1 214 73.8
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.5e-61 240.0 237 56.1
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 3.1e-59 233.0 252 52.0
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.4e-58 229.6 250 63.2
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 9.8e-58 228.0 128 83.6
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 9.2e-56 221.5 294 46.3
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.0e-55 218.8 242 64.9
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.7e-54 217.2 237 66.2
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.6e-54 215.3 237 63.7
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.0e-50 203.8 297 43.8
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 6.0e-47 192.2 323 47.7
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.2e-44 184.5 252 60.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 2.8e-44 183.3 264 55.7
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 5.8e-42 175.6 246 45.5
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 7.1e-40 168.7 238 45.4
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 7.1e-40 168.7 238 45.4
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 7.8e-39 165.2 295 38.6
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 9.6e-37 158.3 323 34.4
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.1e-35 154.8 146 67.8
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.0e-35 152.9 74 89.2
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 2.6e-34 150.2 149 73.2
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.4e-34 149.8 181 46.4
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.7e-33 147.5 161 51.6
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.8e-33 146.4 241 48.5
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.2e-31 141.4 246 39.4
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 8.7e-30 135.2 73 78.1
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 1.3e-28 131.3 73 83.6
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 2.3e-22 110.5 59 78.0
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.8e-20 103.6 156 57.7
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-19 100.9 122 46.7
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 4.5e-18 96.3 99 55.6
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.9e-17 93.6 50 76.0
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 8.4e-17 92.0 128 32.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.6e-15 87.8 137 38.7
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.2e-10 71.6 92 42.4
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-08 64.7 90 42.2
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 3.2e-08 63.5 100 38.0


User provided reference genes

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