Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 2.4e-276 954.9 497 100.0
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.1e-217 760.0 497 81.1
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 1.6e-174 616.7 527 64.7
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.1e-159 567.4 527 60.7
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.7e-158 562.8 527 60.3
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.1e-151 540.8 532 59.2
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 9.0e-146 521.2 520 58.7
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.7e-136 490.3 529 55.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.9e-136 489.6 543 54.1
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 6.4e-136 488.4 536 54.3
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 2.9e-128 463.0 566 51.6
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 4.9e-128 462.2 514 54.3
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.2e-127 459.5 532 52.1
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 8.7e-125 451.4 546 50.0
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 8.7e-125 451.4 542 52.4
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 8.7e-125 451.4 538 52.2
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.1e-124 451.1 523 54.5
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.9e-124 450.3 585 48.7
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 7.4e-124 448.4 535 51.2
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 9.6e-124 448.0 522 50.8
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 9.6e-124 448.0 515 52.4
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.8e-122 443.7 522 53.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.4e-122 443.4 546 49.1
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 3.1e-122 443.0 534 50.7
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 4.1e-122 442.6 544 49.3
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 6.9e-122 441.8 533 50.3
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.3e-120 437.6 540 51.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 2.1e-118 430.3 524 52.9
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.3e-116 422.9 534 50.4
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 5.7e-116 422.2 538 50.4
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 9.7e-116 421.4 562 48.6
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.3e-115 418.7 526 49.6
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.1e-114 417.9 535 49.0
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.4e-114 417.5 511 52.4
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 5.3e-114 415.6 545 49.4
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.0e-113 413.7 539 48.8
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 2.6e-113 413.3 540 49.4
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 2.6e-113 413.3 573 46.6
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 2.6e-113 413.3 635 42.8
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 2.9e-112 409.8 566 47.9
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-111 406.8 538 49.4
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 9.4e-111 404.8 540 47.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 2.7e-110 403.3 548 48.5
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 6.1e-110 402.1 539 48.2
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 7.9e-110 401.7 551 46.5
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.0e-109 401.4 524 46.4
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 3.0e-109 399.8 526 49.4
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 7.4e-108 395.2 532 48.5
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 2.2e-107 393.7 528 48.3
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 6.3e-107 392.1 575 45.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.8e-106 390.6 540 47.2
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 3.4e-105 386.3 541 47.0
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.7e-104 384.0 474 50.6
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.2e-104 383.6 538 46.3
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 6.5e-104 382.1 515 47.2
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 8.5e-104 381.7 531 46.1
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.1e-103 381.3 573 45.0
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 4.2e-103 379.4 547 48.1
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.1e-102 377.1 508 48.8
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.1e-102 377.1 503 49.3
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.7e-102 376.7 537 46.9
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.1e-100 371.3 530 45.3
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 4.4e-100 369.4 514 47.1
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 8.2e-99 365.2 589 44.0
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 3.5e-97 359.8 496 48.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.0e-96 358.2 551 45.6
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 5.5e-95 352.4 531 44.4
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 9.4e-95 351.7 558 45.3
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 9.4e-95 351.7 537 43.8
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.2e-94 351.3 342 55.8
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.6e-94 350.9 521 44.1
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.6e-94 350.9 531 46.5
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.6e-94 350.9 545 44.0
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 4.7e-94 349.4 505 44.0
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 4.7e-94 349.4 537 44.7
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.8e-93 347.4 524 45.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 3.0e-93 346.7 530 46.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.5e-92 344.4 531 46.1
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 4.4e-92 342.8 518 45.2
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.4e-92 342.8 539 44.3
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 2.8e-91 340.1 513 44.6
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 8.2e-91 338.6 513 44.6
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.8e-90 337.4 533 41.8
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 9.1e-90 335.1 566 43.1
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 4.5e-89 332.8 454 48.9
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.0e-88 331.6 564 41.7
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.3e-88 331.3 510 44.3
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.9e-88 330.1 449 46.1
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.0e-85 321.6 527 44.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.4e-85 321.2 517 41.4
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.6e-84 317.0 517 42.4
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.4e-82 310.5 557 40.9
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.6e-81 307.8 456 43.2
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.3e-80 304.7 520 41.5
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 8.5e-80 302.0 529 40.6
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.5e-79 300.4 577 39.3
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.0e-77 295.0 471 41.8
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 2.7e-73 280.4 557 39.7
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.7e-73 280.4 519 40.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.0e-72 278.5 540 40.4
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 2.9e-72 276.9 308 52.6
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 6.6e-72 275.8 530 38.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.1e-71 275.0 464 42.7
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 2.5e-71 273.9 470 41.9
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 2.5e-71 273.9 470 41.9
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-70 271.6 292 50.7
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 2.3e-69 267.3 525 40.4
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 8.9e-69 265.4 547 37.5
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 3.7e-59 233.4 292 47.6
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.4e-58 231.5 459 41.8
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.3e-56 224.9 382 41.9
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 9.5e-47 192.2 440 38.4
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 3.6e-46 190.3 324 40.1
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 8.1e-46 189.1 390 36.7
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 2.3e-45 187.6 441 37.6
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.4e-42 178.3 563 30.7
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.3e-40 171.8 490 31.0
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 2.3e-40 171.0 565 30.6
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.5e-39 168.3 256 42.6
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.9e-34 151.4 390 35.4
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.3e-27 128.6 189 40.7
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.9e-26 124.8 257 42.0
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 1.9e-23 114.8 256 37.9
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.9e-23 114.8 221 39.8
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.3e-19 102.1 164 43.9
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.2e-17 95.5 107 53.3
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 7.9e-17 92.8 212 37.7
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.8e-16 91.7 264 32.6
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 2.5e-15 87.8 72 56.9
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.3e-15 87.0 100 56.0
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 5.6e-15 86.7 128 32.0
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 6.2e-14 83.2 193 34.7
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 3.4e-12 77.4 109 47.7
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 3.4e-12 77.4 109 47.7
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 3.4e-12 77.4 109 47.7
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 3.4e-12 77.4 109 47.7
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 3.4e-12 77.4 109 47.7
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 3.4e-12 77.4 109 47.7
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.9e-11 74.3 106 45.3
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.2e-09 68.9 134 38.8
SGA_v2.0_scaffold31G12601 Striga asiatica HOM05D018969 ORTHO05D029317 2.2e-06 58.2 93 45.2


User provided reference genes

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