Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1908.6 993 100.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1441.0 989 75.9
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1409.8 992 74.5
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1375.9 989 74.8
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1186.0 977 64.2
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1179.1 985 65.0
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1175.6 983 63.3
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1169.5 981 63.0
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1159.4 988 61.8
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1157.1 981 62.6
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1156.0 985 63.4
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1154.4 985 63.4
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1152.1 983 64.4
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1149.8 992 61.5
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1148.7 985 62.9
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1147.1 982 64.3
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1144.4 988 62.4
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1139.8 983 63.6
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1138.6 991 60.6
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1138.3 973 60.9
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1130.2 989 60.1
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1124.4 983 63.1
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1124.4 796 73.7
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1120.5 919 63.9
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1119.0 994 59.7
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1111.3 1064 57.0
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1099.3 986 61.2
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1098.2 947 61.5
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1098.2 975 60.4
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1095.5 993 61.1
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1095.1 1023 58.7
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1091.3 983 60.2
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1085.1 986 61.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1083.6 981 58.0
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1080.9 997 59.6
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1078.2 986 60.2
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1077.8 983 59.7
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1076.6 997 59.1
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1075.1 988 60.5
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 6.8e-312 1073.9 1213 51.7
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 2.3e-310 1068.9 997 58.4
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 5.2e-310 1067.8 1015 58.4
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 1.1e-309 1066.6 927 60.9
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 2.2e-308 1062.4 986 59.2
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 2.8e-308 1062.0 1008 59.6
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 4.8e-308 1061.2 1104 54.8
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 4.8e-308 1061.2 979 58.7
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 8.2e-308 1060.4 986 57.4
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 5.3e-307 1057.7 980 58.5
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 6.9e-307 1057.4 997 58.7
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 1.2e-303 1046.6 970 58.1
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.2e-303 1046.6 983 57.8
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 2.1e-303 1045.8 1002 56.3
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.3e-300 1036.6 984 57.4
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 8.2e-300 1033.9 997 57.3
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 2.9e-297 1025.4 982 58.6
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 7.2e-296 1020.8 943 58.3
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 2.7e-295 1018.8 969 57.3
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.7e-295 1018.1 941 58.8
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 4.7e-295 1018.1 983 57.3
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 6.1e-295 1017.7 989 57.1
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 1.0e-294 1016.9 983 57.2
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 2.0e-293 1012.7 990 57.3
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 9.7e-293 1010.4 983 57.2
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 1.7e-292 1009.6 990 57.1
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 1.7e-292 1009.6 992 57.0
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 1.7e-292 1009.6 990 57.2
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.8e-291 1006.1 1152 51.0
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 2.0e-290 1002.7 984 56.2
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 2.7e-290 1002.3 986 57.0
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 7.2e-288 994.2 991 56.0
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.7e-284 983.0 966 56.6
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 5.0e-281 971.5 992 55.4
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 3.2e-280 968.8 986 55.6
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 9.5e-280 967.2 976 53.1
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 9.5e-280 967.2 985 53.5
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 4.0e-278 961.8 988 54.7
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 1.4e-275 953.4 820 61.8
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.7e-274 949.1 1010 53.8
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.7e-274 949.1 1047 51.2
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.7e-265 919.8 831 59.1
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 3.3e-264 915.6 989 53.2
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 7.3e-264 914.4 934 52.7
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.8e-262 909.8 1003 52.5
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.8e-262 909.8 997 52.4
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.3e-262 909.4 977 50.1
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 3.6e-255 885.6 741 64.1
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 2.6e-253 879.4 836 56.5
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 2.9e-252 875.9 956 52.1
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 5.8e-245 851.7 692 67.8
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.1e-243 845.5 783 61.0
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 3.9e-241 839.0 994 48.6
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 7.3e-232 808.1 992 46.9
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.1e-219 767.7 712 57.0
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 2.8e-199 699.9 669 55.5
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.7e-191 674.1 625 60.5
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 3.9e-185 652.9 586 61.8
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 4.0e-177 626.3 639 53.5
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 8.3e-159 565.5 424 68.4
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.9e-155 554.3 500 58.4
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.3e-155 553.5 606 54.3
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 5.2e-153 546.2 989 36.8
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 5.7e-152 542.7 427 70.7
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 6.6e-140 502.7 976 37.7
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 4.0e-137 493.4 424 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.3e-135 488.4 979 34.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.3e-131 473.8 520 53.7
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.4e-129 468.4 605 45.8
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 6.8e-129 466.1 970 33.9
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.3e-116 424.5 633 40.6
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.1e-115 422.2 1003 32.6
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 3.8e-111 407.1 296 72.3
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 5.1e-92 343.6 749 34.4
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 6.5e-87 326.6 362 50.6
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.3e-83 314.3 252 68.7
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-80 303.9 625 33.9
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 3.2e-78 297.7 228 69.3
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.6e-77 295.4 276 55.4
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 2.0e-67 261.9 213 74.2
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 7.0e-65 253.4 675 32.0
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 1.6e-64 252.3 284 52.1
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.0e-56 225.3 151 69.5
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 3.8e-47 194.5 260 43.5
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 2.1e-45 188.7 124 76.6
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 3.1e-41 174.9 147 59.9
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.2e-34 152.1 96 72.9
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 4.7e-29 134.4 228 35.5
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.4e-25 122.1 75 73.3
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.0e-23 115.2 178 40.4
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 6.6e-23 114.0 157 42.0
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 9.5e-22 110.2 185 34.6
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.6e-21 109.4 108 53.7
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.6e-19 102.1 81 67.9
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 8.3e-18 97.1 100 58.0
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 2.1e-16 92.4 132 41.7
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 2.1e-16 92.4 84 60.7
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 7.3e-14 84.0 196 33.2
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 8.1e-13 80.5 57 59.6
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 8.9e-12 77.0 66 66.7
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 4.4e-11 74.7 131 40.5
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.8e-10 71.6 162 35.2
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 3.8e-10 71.6 130 37.7
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 5.4e-09 67.8 517 23.4
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.1e-08 65.9 113 36.3
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 7.8e-08 63.9 1043 19.7
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.7e-07 62.8 83 45.8
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 3.9e-07 61.6 66 48.5
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 1.9e-06 59.3 77 41.6
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 2.5e-06 58.9 169 30.8
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 2.5e-06 58.9 241 28.2
Lsat_1_v5_gn_3_122361 Lactuca sativa HOM05D004564 ORTHO05D006106 3.3e-06 58.5 55 52.7


User provided reference genes

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