Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 1.9e-104 382.5 194 100.0
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.3e-43 179.1 114 77.2
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.3e-36 157.1 115 73.0
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.7e-28 130.2 111 64.0
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.1e-27 127.5 116 64.7
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.1e-27 127.5 115 62.6
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.5e-27 127.1 117 62.4
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 2.5e-27 126.3 117 63.2
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.5e-27 126.3 116 61.2
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 4.3e-27 125.6 117 62.4
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 7.3e-27 124.8 117 64.1
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 9.5e-27 124.4 117 60.7
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 1.2e-26 124.0 116 63.8
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.6e-26 123.6 117 59.8
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 2.1e-26 123.2 115 62.6
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 4.7e-26 122.1 117 60.7
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 4.7e-26 122.1 138 54.3
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 8.1e-26 121.3 114 60.5
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 8.1e-26 121.3 119 60.5
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 8.1e-26 121.3 118 61.9
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 8.1e-26 121.3 116 61.2
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 8.1e-26 121.3 95 65.3
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 1.4e-25 120.6 118 59.3
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 2.3e-25 119.8 117 61.5
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.1e-25 119.4 117 59.8
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 4.0e-25 119.0 133 54.1
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 4.0e-25 119.0 116 59.5
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 5.2e-25 118.6 97 62.9
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 6.8e-25 118.2 119 58.0
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 6.8e-25 118.2 117 59.8
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 6.8e-25 118.2 118 61.0
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 8.9e-25 117.9 119 60.5
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.2e-24 117.5 116 58.6
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.5e-24 117.1 115 59.1
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.5e-24 117.1 115 60.0
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.5e-24 117.1 118 60.2
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.6e-24 116.3 115 60.0
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.4e-24 115.9 117 61.5
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 3.4e-24 115.9 135 53.3
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 3.4e-24 115.9 137 54.0
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 3.4e-24 115.9 133 53.4
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.4e-24 115.5 116 58.6
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 4.4e-24 115.5 117 58.1
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 5.8e-24 115.2 113 60.2
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 5.8e-24 115.2 113 60.2
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 5.8e-24 115.2 117 58.1
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 9.9e-24 114.4 116 56.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 9.9e-24 114.4 137 54.7
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.3e-23 114.0 120 58.3
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.9e-23 112.8 116 57.8
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 3.8e-23 112.5 117 58.1
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 4.9e-23 112.1 117 56.4
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 4.9e-23 112.1 116 56.9
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 4.9e-23 112.1 116 56.9
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 4.9e-23 112.1 133 51.9
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 8.4e-23 111.3 118 55.9
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.1e-22 110.9 118 58.5
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.1e-22 110.9 112 58.0
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.4e-22 110.5 117 53.8
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.4e-22 110.5 116 52.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.9e-22 110.2 114 57.0
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.9e-22 110.2 115 54.8
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.4e-22 109.8 114 57.9
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.4e-22 109.8 122 53.3
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.4e-22 109.8 116 55.2
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.1e-22 109.0 114 58.8
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 5.4e-22 108.6 119 55.5
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 7.1e-22 108.2 114 57.0
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 7.1e-22 108.2 119 53.8
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 7.1e-22 108.2 119 56.3
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.2e-21 107.5 113 54.9
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.2e-21 107.5 111 55.0
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.2e-21 107.5 119 53.8
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.6e-21 107.1 115 57.4
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 2.1e-21 106.7 124 54.8
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.1e-21 106.7 123 54.5
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 3.5e-21 105.9 129 50.4
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 3.5e-21 105.9 119 52.9
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 4.6e-21 105.5 116 52.6
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 4.6e-21 105.5 123 53.7
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 6.0e-21 105.1 113 54.0
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 6.0e-21 105.1 139 46.0
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 6.0e-21 105.1 119 55.5
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 6.0e-21 105.1 132 50.8
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.0e-20 104.4 117 54.7
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.3e-20 104.0 118 54.2
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.7e-20 103.6 111 52.3
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.7e-20 103.6 111 52.3
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.7e-20 103.6 132 50.0
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.0e-20 102.8 113 53.1
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 3.0e-20 102.8 119 53.8
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.5e-19 100.5 105 52.4
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 3.3e-19 99.4 115 53.0
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 3.3e-19 99.4 94 56.4
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 4.3e-19 99.0 114 54.4
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.3e-19 99.0 116 49.1
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 7.3e-19 98.2 116 52.6
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 2.1e-18 96.7 60 76.7
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.6e-18 95.9 120 50.8
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.6e-18 95.9 73 68.5
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 3.6e-18 95.9 122 48.4
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 4.7e-18 95.5 116 50.0
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 4.7e-18 95.5 107 53.3
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 6.2e-18 95.1 119 51.3
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 3.1e-17 92.8 112 50.0
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.0e-17 92.4 121 51.2
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 8.9e-17 91.3 123 48.0
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.2e-16 90.9 117 47.9
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.0e-16 90.1 75 62.7
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 2.0e-16 90.1 75 62.7
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 2.6e-16 89.7 114 48.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 2.6e-16 89.7 114 48.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 2.6e-16 89.7 114 48.2
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.6e-16 89.7 113 49.6
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 3.4e-16 89.4 123 48.8
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 7.6e-16 88.2 112 48.2
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 9.9e-16 87.8 58 72.4
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.3e-15 87.4 75 60.0
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.3e-15 87.4 75 60.0
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.3e-15 87.4 75 60.0
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.3e-15 87.4 111 49.5
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.9e-15 86.3 58 70.7
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 3.8e-15 85.9 139 42.4
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 6.4e-15 85.1 71 60.6
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 6.4e-15 85.1 78 59.0
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 6.4e-15 85.1 124 46.8
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 1.1e-14 84.3 112 45.5
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 1.1e-14 84.3 112 45.5
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 1.1e-14 84.3 116 47.4
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.9e-14 83.6 59 71.2
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 2.7e-13 79.7 116 45.7
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 2.7e-13 79.7 116 45.7
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 7.8e-13 78.2 116 44.8
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.0e-12 77.8 107 48.6
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.3e-12 77.4 57 66.7
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.9e-12 75.9 69 60.9
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 8.7e-12 74.7 40 85.0
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 6.2e-10 68.6 118 44.9
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.2e-10 68.6 48 66.7
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 4.0e-09 65.9 48 66.7
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 5.3e-09 65.5 113 39.8
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 6.9e-09 65.1 112 43.8
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.6e-08 63.2 56 57.1
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.5e-08 62.4 38 76.3
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-06 57.8 49 57.1
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.9e-06 57.0 113 37.2
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.2e-06 56.2 59 57.6
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 5.4e-06 55.5 35 74.3


User provided reference genes

Program Settings