Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 5.8e-225 783.9 387 100.0
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 3.1e-101 372.9 242 76.9
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.2e-100 370.9 243 75.3
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.4e-98 364.0 243 74.9
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.7e-97 359.8 240 75.8
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.0e-96 357.8 243 74.5
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.3e-96 357.5 243 73.3
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 2.3e-96 356.7 243 73.7
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 2.3e-96 356.7 243 72.4
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 3.9e-96 355.9 243 72.0
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 5.1e-96 355.5 243 73.7
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 6.6e-96 355.1 243 73.3
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 6.6e-96 355.1 242 72.7
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 6.6e-96 355.1 243 72.0
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 8.7e-96 354.8 243 72.8
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.9e-95 353.6 243 72.0
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.5e-95 353.2 241 73.4
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 3.3e-95 352.8 243 72.8
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 5.6e-95 352.1 243 72.4
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 7.3e-95 351.7 242 72.3
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 7.3e-95 351.7 243 73.7
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.2e-94 350.9 243 71.6
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.6e-94 350.5 243 70.8
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 2.1e-94 350.1 243 71.2
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 4.7e-94 349.0 242 71.5
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 6.2e-94 348.6 243 70.8
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 6.2e-94 348.6 242 73.1
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 8.1e-94 348.2 258 68.2
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 1.1e-93 347.8 243 72.4
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.1e-93 347.8 242 71.9
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 1.8e-93 347.1 242 70.7
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 2.4e-93 346.7 242 71.5
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 4.0e-93 345.9 262 68.3
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 9.0e-93 344.7 243 72.4
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.2e-92 344.4 242 71.9
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.2e-92 344.4 242 71.5
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.5e-92 344.0 243 71.6
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.6e-92 343.2 243 71.6
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 3.4e-92 342.8 242 71.1
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 3.4e-92 342.8 243 70.8
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 5.8e-92 342.0 242 71.5
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 9.9e-92 341.3 242 69.8
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 1.3e-91 340.9 242 70.2
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.3e-91 340.9 242 69.4
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 2.2e-91 340.1 242 70.2
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.2e-91 340.1 242 69.4
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 2.2e-91 340.1 243 69.5
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 2.2e-91 340.1 243 71.6
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.2e-91 340.1 243 71.2
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.2e-91 340.1 242 70.2
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 2.9e-91 339.7 243 71.2
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 4.9e-91 339.0 242 69.8
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.1e-90 337.8 242 66.9
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.4e-90 337.4 241 69.7
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.4e-90 337.4 243 67.5
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 1.9e-90 337.0 243 70.0
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.9e-90 337.0 243 69.5
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 1.9e-90 337.0 242 68.6
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.4e-90 336.7 243 70.4
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 4.2e-90 335.9 242 69.0
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 7.1e-90 335.1 241 68.0
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 7.1e-90 335.1 242 68.6
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 9.3e-90 334.7 242 69.8
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 1.2e-89 334.3 243 69.5
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 1.6e-89 334.0 243 69.1
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.1e-89 333.6 242 67.8
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 2.7e-89 333.2 243 68.7
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 3.5e-89 332.8 243 69.1
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 4.6e-89 332.4 241 68.9
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 6.0e-89 332.0 242 69.0
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 7.8e-89 331.6 243 68.3
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 7.8e-89 331.6 243 68.7
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 7.8e-89 331.6 243 68.7
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.0e-88 331.3 243 69.1
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.3e-88 330.9 242 69.8
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 1.3e-88 330.9 243 68.7
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 2.3e-88 330.1 243 69.1
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.1e-88 328.9 236 70.8
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 1.1e-87 327.8 243 68.7
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.5e-87 327.4 391 50.4
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 1.9e-87 327.0 242 69.0
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 3.3e-87 326.2 241 68.5
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 3.3e-87 326.2 243 68.7
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 4.3e-87 325.9 241 68.5
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 7.3e-87 325.1 243 67.9
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 7.3e-87 325.1 243 68.3
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 3.6e-86 322.8 286 60.5
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 4.8e-86 322.4 215 74.0
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.8e-85 320.5 231 69.3
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 4.0e-85 319.3 231 68.0
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 6.9e-85 318.5 246 66.3
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.3e-83 314.3 243 66.7
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 3.8e-83 312.8 241 65.1
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 6.4e-83 312.0 243 66.7
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 8.4e-83 311.6 344 51.5
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 3.5e-81 306.2 242 65.3
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 4.6e-81 305.8 231 67.1
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 3.0e-80 303.1 221 68.3
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 1.5e-79 300.8 230 67.0
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 1.2e-73 281.2 231 62.8
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 1.8e-72 277.3 241 57.7
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-70 270.8 244 59.4
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.6e-70 270.8 244 59.4
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 1.6e-70 270.8 241 58.9
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 4.8e-70 269.2 207 65.2
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.1e-66 258.1 201 65.2
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.4e-66 257.7 251 57.8
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 6.9e-53 212.2 238 49.2
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 7.7e-52 208.8 253 49.8
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 2.7e-49 200.3 262 42.4
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 3.8e-43 179.9 253 42.3
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 4.7e-41 172.9 259 43.6
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.0e-40 171.8 97 83.5
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.7e-38 163.3 243 42.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 7.7e-36 155.6 171 52.6
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.2e-31 141.7 130 59.2
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 5.7e-31 139.4 81 75.3
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 1.2e-28 131.7 66 83.3
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 3.6e-17 93.6 112 49.1
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.4e-13 81.6 82 57.3
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.2e-12 78.6 56 64.3
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.5e-10 71.6 82 54.9
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 2.6e-07 60.8 60 61.7
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 4.4e-07 60.1 32 78.1
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.7e-06 58.2 40 67.5
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 1.7e-06 58.2 48 52.1
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 1.7e-06 58.2 48 52.1
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 1.7e-06 58.2 48 52.1
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 2.9e-06 57.4 78 48.7


User provided reference genes

Program Settings