Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 0.0e+00 1426.0 721 100.0
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 2.9e-193 679.5 487 72.1
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 4.7e-180 635.6 490 67.1
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 6.2e-172 608.6 488 63.9
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 5.2e-171 605.5 475 64.2
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 5.3e-163 578.9 498 60.4
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 9.3e-160 568.2 482 61.6
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.2e-159 567.8 492 60.8
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.7e-159 566.6 493 59.8
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 3.5e-159 566.2 493 60.4
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.3e-157 559.7 495 58.8
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 9.6e-157 558.1 483 58.8
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 4.8e-156 555.8 446 64.3
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 4.8e-156 555.8 499 58.5
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.4e-155 554.3 481 58.8
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 9.0e-155 551.6 472 60.8
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.5e-154 550.8 479 59.1
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 2.6e-154 550.1 433 64.0
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 4.5e-154 549.3 444 64.0
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.3e-153 547.7 481 60.1
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.9e-152 543.9 481 58.4
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.9e-152 543.9 446 63.0
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.9e-152 543.9 483 59.2
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.2e-151 541.2 490 57.3
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 6.0e-151 538.9 440 62.3
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 3.9e-150 536.2 476 59.0
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 5.1e-150 535.8 482 58.5
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.1e-149 534.6 489 58.5
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 2.5e-149 533.5 480 57.5
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 5.6e-149 532.3 483 58.0
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.6e-148 530.8 492 56.9
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.8e-148 530.0 483 58.2
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 3.7e-148 529.6 480 57.1
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 4.8e-148 529.3 482 57.7
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 4.8e-148 529.3 493 56.2
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 6.2e-148 528.9 488 57.0
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 8.1e-148 528.5 436 63.1
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.8e-147 527.3 462 58.0
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.8e-147 527.3 477 57.7
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 5.3e-147 525.8 458 59.8
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 1.2e-146 524.6 437 61.8
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 1.5e-146 524.2 482 56.8
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 2.0e-146 523.9 475 56.8
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 3.4e-146 523.1 481 57.8
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.4e-146 523.1 494 56.3
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 5.8e-146 522.3 481 57.6
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 7.6e-146 521.9 461 59.2
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.0e-145 521.5 481 57.6
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.3e-145 521.2 479 56.8
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.7e-145 520.8 476 56.5
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 3.2e-144 516.5 455 58.0
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.5e-144 515.8 451 58.8
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.5e-144 515.8 481 56.3
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.2e-143 514.6 482 55.8
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 3.5e-143 513.1 482 57.7
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 3.5e-143 513.1 491 54.8
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 6.0e-143 512.3 460 58.0
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 1.3e-142 511.1 469 57.1
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 3.9e-142 509.6 443 58.5
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 3.9e-142 509.6 503 55.9
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.5e-141 507.7 574 48.8
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 2.5e-141 506.9 488 53.5
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 2.5e-141 506.9 437 58.6
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 7.4e-141 505.4 458 56.6
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 2.1e-140 503.8 483 55.9
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 3.7e-140 503.1 411 61.6
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 6.3e-140 502.3 489 56.0
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 6.3e-140 502.3 464 54.5
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 2.0e-138 497.3 484 54.8
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 1.3e-137 494.6 445 56.2
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.9e-136 490.7 442 57.5
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 1.9e-136 490.7 487 55.4
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 7.2e-136 488.8 442 57.5
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 2.7e-135 486.9 484 53.1
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 3.6e-135 486.5 454 56.2
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 7.9e-135 485.3 434 58.3
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.0e-134 485.0 432 57.6
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 1.0e-134 485.0 484 53.3
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 1.3e-134 484.6 478 54.0
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 1.3e-134 484.6 478 54.0
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.3e-134 483.8 434 58.8
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 3.0e-134 483.4 433 58.7
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.0e-134 483.4 479 52.2
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 3.9e-134 483.0 434 58.5
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 2.2e-132 477.2 469 54.2
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.2e-132 477.2 475 53.7
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-132 476.9 411 60.1
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.7e-132 476.5 479 52.2
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 6.3e-132 475.7 439 58.5
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 8.2e-132 475.3 457 55.6
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.1e-131 474.9 434 57.6
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.8e-131 474.2 435 55.9
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.8e-131 474.2 439 56.3
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 3.1e-131 473.4 479 54.1
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 4.1e-131 473.0 435 57.0
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.5e-130 471.1 485 53.2
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 2.0e-130 470.7 434 56.9
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 4.5e-130 469.5 433 57.7
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.3e-129 468.0 434 56.2
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.3e-129 468.0 448 55.8
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 4.6e-127 459.5 435 55.2
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 6.7e-126 455.7 436 56.0
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 3.3e-125 453.4 440 53.9
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 5.7e-125 452.6 436 55.7
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 9.7e-125 451.8 460 53.5
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 5.9e-122 442.6 448 54.5
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.3e-121 441.4 447 52.8
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 2.2e-121 440.7 432 55.1
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 6.5e-121 439.1 421 56.5
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 8.5e-121 438.7 333 66.1
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 5.5e-120 436.0 412 55.6
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 9.7e-117 425.2 371 61.2
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-115 421.4 424 53.3
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.2e-114 418.3 475 50.3
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.6e-114 417.9 306 64.7
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.0e-110 403.3 398 55.5
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 8.8e-110 402.1 381 56.4
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 5.3e-107 392.9 474 49.4
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 5.9e-106 389.4 424 53.1
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 7.2e-104 382.5 494 46.0
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.8e-100 369.8 463 45.6
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 3.5e-98 363.6 426 46.7
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 2.2e-97 360.9 307 59.0
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.9e-97 360.5 489 45.6
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 3.6e-95 353.6 484 44.0
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 4.5e-90 336.7 422 44.8
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 4.3e-88 330.1 307 55.7
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 5.2e-86 323.2 359 50.7
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 4.4e-77 293.5 192 71.9
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 6.4e-76 289.7 231 60.2
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 1.9e-72 278.1 298 48.0
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 3.1e-70 270.8 192 70.8
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 8.9e-70 269.2 313 46.3
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 7.8e-66 256.1 542 33.0
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.2e-60 238.0 304 45.7
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 5.1e-57 226.9 229 55.5
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 3.6e-47 194.1 230 49.1
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 9.3e-43 179.5 130 64.6
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.1e-40 172.6 291 34.0
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 9.3e-35 152.9 426 29.1
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 2.3e-33 148.3 122 59.8
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 6.7e-25 120.2 84 64.3
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 8.7e-25 119.8 250 32.8
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.5e-24 119.0 88 62.5
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 2.5e-24 118.2 80 63.8
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 8.8e-17 93.2 132 47.0
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 9.7e-16 89.7 66 60.6
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.3e-15 89.4 65 61.5
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 6.3e-15 87.0 65 60.0
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.2e-13 82.8 114 40.4
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 1.0e-12 79.7 57 68.4
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 1.6e-10 72.4 46 67.4
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 1.7e-07 62.4 117 37.6
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 2.2e-07 62.0 66 47.0
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 1.1e-06 59.7 100 39.0
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 2.4e-06 58.5 177 24.9
Zm00001eb331980 Zea mays HOM05D000433 ORTHO05D000443 4.1e-06 57.8 100 39.0


User provided reference genes

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