Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 2.0e-239 832.0 412 100.0
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 5.3e-168 594.7 309 94.5
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 9.0e-168 594.0 309 95.1
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.0e-167 592.8 309 94.8
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 4.5e-167 591.7 309 94.8
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.5e-167 591.7 309 94.2
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.0e-166 590.5 309 93.9
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.0e-166 590.5 309 93.2
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.3e-166 590.1 309 93.9
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.3e-166 590.1 309 93.5
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.2e-166 589.3 309 92.6
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 2.9e-166 589.0 309 93.9
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 2.9e-166 589.0 309 93.2
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.4e-165 586.6 309 93.5
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.4e-165 586.6 308 92.5
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.9e-165 586.3 307 94.1
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 5.5e-165 584.7 309 92.9
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.2e-164 583.6 307 93.2
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 4.6e-164 581.6 309 91.6
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 4.6e-164 581.6 309 91.9
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 4.6e-164 581.6 309 92.2
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 4.6e-164 581.6 309 92.2
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 7.9e-164 580.9 309 91.9
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.0e-163 580.5 309 91.9
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.8e-163 579.7 309 91.3
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.8e-163 579.7 309 91.6
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 3.0e-163 578.9 309 91.3
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 3.0e-163 578.9 309 91.6
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 3.9e-163 578.6 309 91.3
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 5.1e-163 578.2 309 90.9
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 6.7e-163 577.8 309 91.3
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 6.7e-163 577.8 309 90.9
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.1e-162 577.0 309 90.6
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.1e-162 577.0 309 90.6
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.1e-162 577.0 309 91.9
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.5e-162 576.6 309 90.6
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.5e-162 576.6 309 90.9
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.5e-162 576.6 309 91.6
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 5.7e-162 574.7 309 90.3
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 7.4e-162 574.3 315 89.8
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 9.7e-162 573.9 309 90.6
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 9.7e-162 573.9 309 90.6
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.3e-161 573.5 309 90.3
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 2.2e-161 572.8 309 90.9
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.8e-161 572.4 309 90.9
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.8e-161 572.4 309 90.0
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 2.8e-161 572.4 309 90.6
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 3.7e-161 572.0 309 90.3
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 4.8e-161 571.6 309 89.6
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 4.8e-161 571.6 309 89.6
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 4.8e-161 571.6 309 90.6
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 6.3e-161 571.2 309 89.6
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 6.3e-161 571.2 309 90.6
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 8.2e-161 570.9 309 89.6
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 8.2e-161 570.9 309 89.6
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 8.2e-161 570.9 309 89.6
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 2.4e-160 569.3 309 90.0
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 3.1e-160 568.9 309 89.6
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 3.1e-160 568.9 309 89.6
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 4.1e-160 568.5 309 90.0
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 6.9e-160 567.8 309 89.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.2e-159 567.0 307 89.9
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 2.0e-159 566.2 307 89.6
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.6e-159 565.8 311 89.4
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.6e-159 565.8 311 89.4
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.6e-159 565.8 311 89.4
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.6e-159 565.8 309 89.3
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 2.6e-159 565.8 351 82.3
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 4.5e-159 565.1 309 89.0
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 4.5e-159 565.1 309 89.0
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 4.5e-159 565.1 309 89.0
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 4.5e-159 565.1 307 89.9
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 4.5e-159 565.1 309 89.0
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 5.9e-159 564.7 309 89.0
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.3e-158 563.5 307 89.6
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.2e-158 562.8 312 88.5
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.2e-158 562.8 309 89.3
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.9e-158 562.4 309 88.3
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 6.5e-158 561.2 309 88.3
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.5e-158 561.2 311 88.4
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 3.2e-157 558.9 295 92.5
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 2.1e-156 556.2 309 87.4
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 7.9e-156 554.3 309 86.1
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 3.3e-154 548.9 309 85.8
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.3e-154 548.5 309 85.4
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 5.7e-154 548.1 304 88.8
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 7.4e-154 547.7 309 85.4
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 9.7e-154 547.4 309 85.1
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.3e-153 547.0 309 85.1
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.8e-153 545.8 309 84.8
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.8e-153 545.8 309 84.5
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 2.8e-153 545.8 309 84.8
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 2.8e-153 545.8 309 85.1
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 3.7e-153 545.4 309 85.1
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 6.3e-153 544.7 309 85.1
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 6.3e-153 544.7 309 84.8
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 6.3e-153 544.7 309 84.5
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 6.3e-153 544.7 309 84.8
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 8.2e-153 544.3 309 84.5
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.4e-152 543.5 309 84.8
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.4e-152 543.5 309 84.5
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.4e-152 543.5 306 86.9
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 4.1e-152 542.0 309 84.1
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.1e-152 542.0 290 91.4
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 5.3e-152 541.6 309 84.1
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.5e-151 540.0 309 84.1
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.5e-151 540.0 309 84.1
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.6e-151 539.3 309 84.1
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.6e-151 539.3 309 87.7
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 5.9e-151 538.1 309 83.5
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.0e-150 537.3 309 84.1
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.3e-150 537.0 309 87.4
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 2.9e-150 535.8 324 80.9
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.4e-149 533.5 309 82.8
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.5e-149 532.7 290 90.3
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.5e-149 531.6 292 89.0
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 2.1e-148 529.6 290 88.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 5.7e-146 521.5 311 79.7
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 2.0e-143 513.1 309 83.2
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 3.5e-143 512.3 309 77.7
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 2.2e-142 509.6 352 75.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 2.9e-142 509.2 290 84.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 6.5e-142 508.1 311 78.8
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 4.7e-140 501.9 271 91.1
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.7e-140 501.9 394 68.5
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 6.1e-140 501.5 311 76.5
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.0e-139 499.2 311 76.2
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 5.9e-135 485.0 335 73.7
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 5.7e-130 468.4 307 73.6
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 6.3e-129 464.9 309 78.3
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 5.4e-128 461.8 265 84.5
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.5e-127 458.8 239 94.6
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.5e-127 458.8 239 94.6
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 4.5e-127 458.8 239 93.7
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 5.5e-125 451.8 269 84.0
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 7.7e-119 431.4 238 88.2
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.3e-118 430.6 251 83.3
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 3.8e-118 429.1 309 71.8
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 9.5e-117 424.5 316 68.0
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.2e-113 413.3 251 82.1
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 6.6e-110 401.7 306 61.8
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 2.3e-107 393.3 216 88.4
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 4.3e-101 372.5 308 58.1
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 5.2e-99 365.5 218 79.8
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.9e-96 357.1 311 58.2
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 2.3e-46 190.7 97 90.7
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.7e-37 158.7 139 61.9
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.5e-34 151.4 180 53.9
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 3.9e-30 136.7 79 83.5
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 3.3e-29 133.7 81 77.8
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.6e-26 124.8 73 82.2
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 2.2e-25 120.9 74 78.4
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.1e-19 100.5 95 54.7
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.5e-16 91.7 51 86.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 8.3e-12 75.9 61 67.2
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 8.3e-12 75.9 47 72.3
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 1.6e-10 71.6 57 66.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 3.8e-09 67.0 100 44.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.1e-08 65.5 60 60.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.1e-08 65.5 60 60.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 2.3e-06 57.8 125 36.0


User provided reference genes

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