Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 7.9e-55 216.9 108 100.0
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 2.8e-20 102.1 56 78.6
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 6.7e-14 80.9 53 66.0
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.7e-14 80.9 45 77.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-13 79.7 53 66.0
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 2.0e-13 79.3 53 66.0
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 3.3e-13 78.6 53 66.0
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 3.3e-13 78.6 53 66.0
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 3.3e-13 78.6 53 66.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 3.3e-13 78.6 53 66.0
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 4.4e-13 78.2 57 59.6
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 7.4e-13 77.4 53 64.2
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.4e-13 77.4 53 62.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.4e-13 77.4 53 62.3
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.4e-13 77.4 53 62.3
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.4e-13 77.4 53 62.3
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.7e-13 77.0 53 64.2
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 2.2e-12 75.9 53 66.0
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 2.2e-12 75.9 53 64.2
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.8e-12 75.5 57 57.9
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 2.8e-12 75.5 57 57.9
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 64.2
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 64.2
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 64.2
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 3.7e-12 75.1 53 66.0
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 4.8e-12 74.7 78 50.0
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 4.8e-12 74.7 53 62.3
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 4.8e-12 74.7 53 62.3
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 4.8e-12 74.7 53 62.3
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 4.8e-12 74.7 53 62.3
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 4.8e-12 74.7 53 62.3
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 4.8e-12 74.7 53 64.2
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 4.8e-12 74.7 53 64.2
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 6.3e-12 74.3 55 61.8
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 6.3e-12 74.3 53 64.2
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 6.3e-12 74.3 53 64.2
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 6.3e-12 74.3 53 64.2
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 6.3e-12 74.3 53 64.2
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 8.2e-12 73.9 53 64.2
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 8.2e-12 73.9 78 53.8
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 1.1e-11 73.6 57 56.1
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-11 73.6 46 71.7
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.4e-11 73.2 53 64.2
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.4e-11 73.2 53 64.2
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 1.4e-11 73.2 44 75.0
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.8e-11 72.8 53 62.3
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.4e-11 72.4 53 64.2
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.4e-11 72.4 53 64.2
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.1e-11 72.0 53 62.3
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 3.1e-11 72.0 53 60.4
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 5.3e-11 71.2 49 65.3
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 5.3e-11 71.2 49 65.3
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 7.0e-11 70.9 53 58.5
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 7.0e-11 70.9 53 58.5
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 7.0e-11 70.9 53 58.5
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 9.1e-11 70.5 78 52.6
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-10 69.3 53 58.5
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 3.5e-10 68.6 53 56.6
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 3.5e-10 68.6 55 56.4
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.8e-09 65.1 70 45.7
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-08 63.2 48 64.6
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-08 62.4 54 55.6
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.2e-07 60.1 48 58.3
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 3.6e-07 58.5 49 61.2


User provided reference genes

Program Settings