Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 5.3e-54 214.2 113 100.0
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 1.8e-22 109.4 118 58.5
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.3e-15 86.7 106 49.1
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 2.4e-14 82.4 109 47.7
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 7.0e-14 80.9 109 45.0
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 9.2e-14 80.5 109 45.0
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 1.0e-12 77.0 89 49.4
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 1.0e-12 77.0 89 49.4
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 1.3e-12 76.6 109 45.9
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 1.7e-12 76.3 109 45.9
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 1.7e-12 76.3 109 44.0
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 2.3e-12 75.9 89 52.8
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 2.3e-12 75.9 109 43.1
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 3.0e-12 75.5 89 48.3
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 3.9e-12 75.1 109 43.1
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.9e-12 75.1 109 42.2
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 3.9e-12 75.1 107 45.8
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 5.0e-12 74.7 109 44.0
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 5.0e-12 74.7 109 43.1
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 5.0e-12 74.7 109 43.1
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 6.6e-12 74.3 109 43.1
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 6.6e-12 74.3 109 45.0
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 8.6e-12 73.9 109 44.0
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 8.6e-12 73.9 102 43.1
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 1.9e-11 72.8 92 45.7
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 3.3e-11 72.0 109 44.0
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 3.3e-11 72.0 109 43.1
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 3.3e-11 72.0 109 43.1
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 3.3e-11 72.0 89 48.3
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 4.3e-11 71.6 89 47.2
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 4.3e-11 71.6 108 41.7
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 5.6e-11 71.2 109 43.1
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 7.3e-11 70.9 109 41.3
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 9.5e-11 70.5 103 41.7
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 9.5e-11 70.5 109 41.3
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.2e-10 70.1 109 41.3
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.2e-10 70.1 109 41.3
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.2e-10 70.1 89 49.4
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.6e-10 69.7 109 43.1
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.1e-10 69.3 109 43.1
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.1e-10 69.3 109 43.1
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.8e-10 68.9 100 45.0
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 2.8e-10 68.9 109 38.5
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.6e-10 68.6 108 39.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 3.6e-10 68.6 79 49.4
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.6e-10 68.6 109 42.2
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 3.6e-10 68.6 109 41.3
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 3.6e-10 68.6 109 41.3
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.6e-10 68.6 87 44.8
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 4.7e-10 68.2 103 40.8
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 4.7e-10 68.2 104 41.3
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 6.2e-10 67.8 89 44.9
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 6.2e-10 67.8 89 46.1
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 8.1e-10 67.4 103 39.8
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 8.1e-10 67.4 125 37.6
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 8.1e-10 67.4 87 44.8
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.1e-09 67.0 101 42.6
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.1e-09 67.0 98 41.8
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.1e-09 67.0 100 42.0
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.4e-09 66.6 85 44.7
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-09 66.6 85 44.7
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.4e-09 66.6 85 44.7
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.8e-09 66.2 109 38.5
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.3e-09 65.9 109 38.5
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.3e-09 65.9 100 40.0
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 3.1e-09 65.5 109 40.4
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 4.0e-09 65.1 87 46.0
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 4.0e-09 65.1 100 39.0
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 5.2e-09 64.7 105 41.0
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 8.9e-09 63.9 107 37.4
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.2e-08 63.5 86 44.2
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 1.5e-08 63.2 87 44.8
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.5e-08 63.2 109 37.6
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.0e-08 62.8 84 46.4
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 2.0e-08 62.8 87 46.0
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.0e-08 62.8 108 40.7
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.0e-08 62.8 89 41.6
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.6e-08 62.4 86 43.0
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 2.6e-08 62.4 86 43.0
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 2.6e-08 62.4 102 39.2
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 2.6e-08 62.4 85 41.2
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.6e-08 62.4 108 40.7
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 2.6e-08 62.4 90 42.2
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 3.4e-08 62.0 86 44.2
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 3.4e-08 62.0 86 44.2
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 3.4e-08 62.0 86 45.3
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 3.4e-08 62.0 109 36.7
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 4.4e-08 61.6 89 42.7
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 4.4e-08 61.6 85 41.2
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 4.4e-08 61.6 85 41.2
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 4.4e-08 61.6 109 35.8
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.4e-08 61.6 109 38.5
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.4e-08 61.6 87 44.8
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 5.8e-08 61.2 114 39.5
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.8e-08 61.2 74 44.6
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 7.5e-08 60.8 89 42.7
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 9.9e-08 60.5 100 40.0
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 9.9e-08 60.5 86 44.2
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 9.9e-08 60.5 85 43.5
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 9.9e-08 60.5 108 37.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.3e-07 60.1 90 44.4
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.3e-07 60.1 98 41.8
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 1.7e-07 59.7 86 44.2
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 1.7e-07 59.7 86 44.2
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 1.7e-07 59.7 86 43.0
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 1.7e-07 59.7 100 40.0
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 2.2e-07 59.3 98 39.8
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 2.9e-07 58.9 89 42.7
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 2.9e-07 58.9 86 43.0
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 2.9e-07 58.9 89 42.7
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 2.9e-07 58.9 106 39.6
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.9e-07 58.9 100 39.0
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 3.7e-07 58.5 98 38.8
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 3.7e-07 58.5 108 39.8
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.7e-07 58.5 111 37.8
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 4.9e-07 58.2 85 36.5
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.9e-07 58.2 78 44.9
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 6.4e-07 57.8 109 34.9
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 6.4e-07 57.8 109 34.9
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 6.4e-07 57.8 88 43.2
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 6.4e-07 57.8 79 44.3
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 1.1e-06 57.0 89 41.6
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 1.1e-06 57.0 89 41.6
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 1.1e-06 57.0 86 38.4
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.4e-06 56.6 89 41.6
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 1.4e-06 56.6 77 45.5
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.4e-06 56.6 67 47.8
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.4e-06 56.6 90 36.7
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.9e-06 56.2 79 43.0
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 2.4e-06 55.8 91 40.7
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 2.4e-06 55.8 91 38.5
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 2.4e-06 55.8 109 35.8
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 3.2e-06 55.5 91 39.6
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.2e-06 55.5 103 36.9
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 3.2e-06 55.5 104 37.5
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 5.4e-06 54.7 86 43.0
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 5.4e-06 54.7 98 38.8
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.1e-06 54.3 109 33.9
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 9.2e-06 53.9 107 29.0


User provided reference genes

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