Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 0.0e+00 1303.5 650 100.0
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 1.5e-193 680.2 418 84.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.2e-143 513.1 427 67.0
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 5.5e-111 406.0 453 55.6
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 3.1e-98 363.6 467 50.5
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 9.4e-95 352.1 453 50.1
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 5.2e-85 319.7 409 44.3
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.7e-83 314.7 452 44.0
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.7e-83 314.7 452 44.0
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 2.4e-82 310.8 387 46.8
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 9.1e-82 308.9 422 46.4
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 2.0e-81 307.8 428 44.6
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 4.5e-81 306.6 435 43.2
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.0e-80 305.4 440 43.2
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.0e-80 305.4 416 46.6
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 3.8e-80 303.5 427 42.6
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 3.8e-80 303.5 418 46.9
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 6.6e-80 302.8 461 42.5
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 1.1e-79 302.0 412 44.9
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 1.5e-79 301.6 429 44.5
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.9e-79 301.2 412 45.4
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 5.5e-79 299.7 433 45.0
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 7.2e-79 299.3 412 44.9
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 9.5e-79 298.9 409 44.0
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.6e-78 298.1 413 43.3
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 2.1e-78 297.7 401 44.6
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 2.8e-78 297.4 408 43.4
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 2.8e-78 297.4 413 45.0
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 3.6e-78 297.0 433 44.8
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 1.0e-77 295.4 438 44.7
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.0e-77 295.4 408 45.6
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 6.8e-77 292.7 436 42.4
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 6.8e-77 292.7 399 44.4
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 1.2e-76 292.0 442 42.5
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 1.5e-76 291.6 443 44.5
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 2.0e-76 291.2 377 47.2
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.5e-76 289.3 436 42.2
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 1.3e-75 288.5 407 45.7
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 1.3e-75 288.5 418 44.3
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-75 288.5 402 45.3
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 2.9e-75 287.3 374 47.6
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 3.7e-75 287.0 453 42.4
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 6.3e-75 286.2 412 44.7
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-74 285.4 436 42.4
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.1e-74 285.4 439 41.9
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 7.0e-74 282.7 332 47.9
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 1.6e-73 281.6 411 43.6
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 2.7e-73 280.8 409 44.5
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 5.9e-73 279.6 441 41.7
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.3e-72 278.5 441 41.7
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.7e-72 278.1 401 44.4
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 2.3e-72 277.7 316 52.5
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 6.6e-72 276.2 442 41.9
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 3.3e-71 273.9 445 44.0
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.3e-71 273.5 435 42.3
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 7.3e-71 272.7 413 44.8
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 1.2e-70 271.9 207 70.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.6e-70 271.6 435 41.8
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 8.0e-70 269.2 483 39.5
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 4.0e-69 266.9 405 42.5
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.2e-69 266.5 407 40.8
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 6.8e-69 266.2 379 42.5
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.2e-68 265.4 413 41.9
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 1.2e-68 265.4 408 42.4
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.6e-68 264.2 399 39.8
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 9.8e-68 262.3 396 40.7
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 1.3e-67 261.9 440 38.6
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 2.2e-67 261.2 407 40.3
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 3.7e-67 260.4 440 38.4
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 4.9e-67 260.0 416 42.3
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 8.3e-67 259.2 446 42.4
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 8.3e-67 259.2 431 39.0
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 8.3e-67 259.2 430 37.7
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 1.4e-66 258.5 450 40.4
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 1.9e-66 258.1 276 53.3
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 3.2e-66 257.3 444 38.5
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 3.2e-66 257.3 444 38.5
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 3.2e-66 257.3 444 38.5
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.2e-65 255.4 245 58.8
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.6e-65 255.0 412 38.3
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 2.0e-65 254.6 431 40.8
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.7e-65 254.2 399 39.6
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 4.6e-65 253.4 338 47.3
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 6.0e-65 253.1 400 39.8
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 7.8e-65 252.7 275 54.5
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 1.0e-64 252.3 490 38.0
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.7e-64 251.5 359 46.2
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 6.6e-64 249.6 407 40.0
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 9.5e-63 245.7 423 39.2
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 2.1e-62 244.6 397 41.3
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 2.8e-62 244.2 410 38.3
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 6.2e-62 243.0 507 36.1
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 3.1e-61 240.7 430 37.9
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 3.4e-60 237.3 410 38.3
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 4.4e-60 236.9 352 39.5
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 2.2e-59 234.6 275 50.5
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 6.4e-59 233.0 411 40.1
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.1e-58 230.3 380 38.9
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.2e-57 228.8 422 37.4
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 7.8e-57 226.1 427 37.0
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 2.3e-56 224.6 411 40.4
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-55 221.5 268 48.5
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 5.6e-55 219.9 453 38.0
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 4.7e-54 216.9 363 38.6
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 1.2e-52 212.2 271 45.8
SGA_v2.0_scaffold136G35042 Striga asiatica HOM05D011754 ORTHO05D014689 4.4e-52 210.3 127 84.3
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.9e-51 206.8 358 38.5
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 4.1e-50 203.8 277 44.8
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 4.1e-50 203.8 383 36.6
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.5e-47 194.5 380 38.7
SGA_v2.0_scaffold185G40046 Striga asiatica HOM05D011754 ORTHO05D014689 1.6e-46 191.8 193 54.9
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 4.4e-44 183.7 276 40.2
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.0e-40 172.6 235 46.8
SGA_v2.0_scaffold136G35040 Striga asiatica HOM05D011754 ORTHO05D014689 1.9e-39 168.3 91 89.0
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 1.6e-38 165.2 361 33.5
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 2.8e-38 164.5 220 45.0
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 2.8e-38 164.5 220 45.9
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 6.4e-35 153.3 263 39.9
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.1e-34 152.5 229 40.2
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.4e-34 152.1 423 30.5
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 7.9e-33 146.4 267 38.2
SGA_v2.0_scaffold23G10167 Striga asiatica HOM05D011754 ORTHO05D014689 1.0e-32 146.0 151 53.0
SGA_v2.0_scaffold101G29754 Striga asiatica HOM05D011754 ORTHO05D014689 2.3e-32 144.8 124 54.8
SGA_v2.0_scaffold319G48528 Striga asiatica HOM05D011754 ORTHO05D014689 5.1e-32 143.7 125 55.2
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 3.8e-27 127.5 101 64.4
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 6.4e-27 126.7 236 33.1
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.9e-26 125.2 195 39.0
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 3.2e-26 124.4 120 55.8
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 3.2e-26 124.4 120 55.8
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 7.1e-26 123.2 105 63.8
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.2e-25 122.5 216 36.1
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.6e-25 122.1 244 32.0
SGA_v2.0_scaffold281G46892 Striga asiatica HOM05D011754 ORTHO05D014689 4.3e-23 114.0 95 58.9
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 1.5e-20 105.5 162 42.6
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 1.7e-19 102.1 332 29.2
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 2.2e-19 101.7 190 38.9
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 2.9e-19 101.3 320 27.8
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 1.1e-18 99.4 173 37.0
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 1.1e-15 89.4 142 39.4
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 1.9e-15 88.6 157 34.4
SGA_v2.0_scaffold130G34257 Striga asiatica HOM05D000842 ORTHO05D000650 7.4e-15 86.7 90 58.9
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 2.1e-14 85.1 66 59.1
SGA_v2.0_scaffold403G51004 Striga asiatica HOM05D011754 ORTHO05D014689 2.4e-13 81.6 64 62.5
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 9.0e-13 79.7 92 42.4
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.0e-11 76.3 157 31.2
SGA_v2.0_scaffold9G04715 Striga asiatica HOM05D008036 ORTHO05D000174 1.0e-11 76.3 104 36.5
SGA_v2.0_scaffold216G42390 Striga asiatica HOM05D011754 ORTHO05D014689 1.7e-11 75.5 65 63.1
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 2.9e-11 74.7 58 60.3
SGA_v2.0_scaffold69G23109 Striga asiatica HOM05D011787 ORTHO05D008317 2.9e-11 74.7 124 33.1
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 6.5e-11 73.6 142 37.3
SGA_v2.0_scaffold154G37187 Striga asiatica HOM05D011754 ORTHO05D014689 8.4e-11 73.2 67 56.7
SGA_v2.0_scaffold30G12418 Striga asiatica HOM05D011787 ORTHO05D008317 8.4e-11 73.2 123 33.3
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.1e-10 72.8 179 31.3
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 4.2e-10 70.9 103 39.8
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.5e-09 67.8 105 39.0
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 3.5e-09 67.8 176 31.8
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 7.9e-09 66.6 104 37.5
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 1.0e-08 66.2 104 39.4
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 6.7e-08 63.5 74 45.9
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 1.6e-06 58.9 65 44.6
Nitab4.5_0000083g0280 Nicotiana tabacum HOM05D002441 ORTHO05D008317 2.2e-06 58.5 126 28.6
Nitab4.5_0009595g0020 Nicotiana tabacum HOM05D002441 ORTHO05D008317 2.2e-06 58.5 143 27.3
Nitab4.5_0000980g0190 Nicotiana tabacum HOM05D002441 ORTHO05D008317 2.8e-06 58.2 126 27.8


User provided reference genes

Program Settings