Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 2.2e-124 449.1 248 100.0
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 3.5e-34 149.4 145 57.9
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 4.6e-34 149.1 137 61.3
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 1.4e-30 137.5 147 52.4
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 1.4e-30 137.5 255 38.4
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 1.8e-30 137.1 216 41.2
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 9.0e-30 134.8 129 56.6
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 3.8e-28 129.4 164 47.0
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 8.4e-28 128.3 138 51.4
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 3.2e-27 126.3 138 52.9
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 4.2e-27 125.9 154 48.7
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 9.3e-27 124.8 185 43.2
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 9.3e-27 124.8 129 57.4
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 2.1e-26 123.6 255 38.8
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 3.5e-26 122.9 151 49.7
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 3.5e-26 122.9 164 43.3
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 6.1e-26 122.1 146 50.0
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 7.9e-26 121.7 139 48.9
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 7.9e-26 121.7 169 45.6
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.0e-25 121.3 232 40.1
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.3e-25 120.9 164 47.6
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.3e-25 120.2 137 51.8
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 3.0e-25 119.8 144 48.6
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 3.0e-25 119.8 153 47.1
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 3.0e-25 119.8 261 36.4
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 6.7e-25 118.6 261 36.4
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 6.7e-25 118.6 246 37.0
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 6.7e-25 118.6 134 53.0
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 8.7e-25 118.2 227 37.9
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 8.7e-25 118.2 247 37.7
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 1.1e-24 117.9 231 39.4
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 1.9e-24 117.1 140 46.4
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 2.5e-24 116.7 197 41.1
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 3.3e-24 116.3 143 48.3
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 3.3e-24 116.3 221 38.9
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 3.3e-24 116.3 124 50.8
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 5.7e-24 115.5 241 39.4
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 7.4e-24 115.2 227 37.0
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 9.7e-24 114.8 205 40.0
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 2.2e-23 113.6 201 40.3
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 2.8e-23 113.2 186 38.7
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 3.7e-23 112.8 148 52.7
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 4.8e-23 112.5 152 52.0
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 4.8e-23 112.5 237 36.7
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 6.3e-23 112.1 127 53.5
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 6.3e-23 112.1 150 45.3
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 1.1e-22 111.3 230 36.5
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 1.8e-22 110.5 143 51.7
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.8e-22 110.5 150 51.3
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 2.4e-22 110.2 277 32.1
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 2.4e-22 110.2 135 48.9
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 3.1e-22 109.8 139 49.6
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 3.1e-22 109.8 138 46.4
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 4.1e-22 109.4 135 51.1
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 5.3e-22 109.0 181 41.4
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 5.3e-22 109.0 226 35.8
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 5.3e-22 109.0 145 44.1
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 6.9e-22 108.6 131 45.8
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 9.0e-22 108.2 250 35.6
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 9.0e-22 108.2 262 34.4
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 9.0e-22 108.2 262 34.4
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 1.2e-21 107.8 237 37.1
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.2e-21 107.8 131 45.0
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 1.2e-21 107.8 137 47.4
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 1.2e-21 107.8 164 41.5
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.5e-21 107.5 226 37.2
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 1.5e-21 107.5 132 47.0
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 3.4e-21 106.3 117 49.6
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 4.5e-21 105.9 230 35.7
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 4.5e-21 105.9 230 35.7
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 4.5e-21 105.9 226 36.3
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 5.9e-21 105.5 122 48.4
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 7.7e-21 105.1 125 46.4
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 1.0e-20 104.8 220 34.5
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 1.0e-20 104.8 271 31.7
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 2.2e-20 103.6 224 34.4
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 2.9e-20 103.2 198 37.4
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 6.5e-20 102.1 213 36.6
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 6.5e-20 102.1 140 45.7
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 8.5e-20 101.7 221 34.8
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 1.1e-19 101.3 139 45.3
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 1.4e-19 100.9 227 34.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.9e-19 100.5 138 45.7
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 2.5e-19 100.1 204 38.2
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 9.4e-19 98.2 216 36.6
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 1.6e-18 97.4 121 43.8
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 2.7e-18 96.7 286 32.2
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 3.6e-18 96.3 144 41.0
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 1.0e-17 94.7 181 37.0
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 2.3e-17 93.6 127 44.1
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 3.0e-17 93.2 139 42.4
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 5.1e-17 92.4 128 44.5
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 5.1e-17 92.4 185 33.0
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 5.1e-17 92.4 115 47.0
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 5.1e-17 92.4 167 41.3
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 6.7e-17 92.0 112 48.2
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.0e-16 90.5 139 43.2
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 3.3e-16 89.7 122 47.5
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 7.4e-16 88.6 224 35.7
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 9.7e-16 88.2 260 30.8
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 9.7e-16 88.2 127 46.5
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 1.3e-15 87.8 176 38.6
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 2.8e-15 86.7 154 37.0
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 3.7e-15 86.3 263 30.0
FAN21G1025 Fragaria x ananassa HOM05D004622 ORTHO05D005431 3.7e-15 86.3 231 32.9
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 4.8e-15 85.9 56 64.3
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 8.2e-15 85.1 118 43.2
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 1.4e-14 84.3 241 32.0
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 2.4e-14 83.6 154 35.7
FAN25G2155 Fragaria x ananassa HOM05D004622 ORTHO05D005431 3.1e-14 83.2 229 32.8
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 6.9e-14 82.0 132 39.4
DCAR_000195 Daucus carota HOM05D004622 ORTHO05D005431 1.2e-13 81.3 150 40.7
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 4.5e-13 79.3 126 46.0
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 4.5e-13 79.3 205 36.6
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 4.5e-13 79.3 154 38.3
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 7.7e-13 78.6 110 44.5
AUR62009747 Chenopodium quinoa HOM05D004622 ORTHO05D005431 2.9e-12 76.6 109 41.3
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 8.5e-12 75.1 123 38.2
Zm00001eb092610 Zea mays HOM05D004622 ORTHO05D005431 1.1e-11 74.7 109 46.8
Psat5g258080 Pisum sativum HOM05D004622 ORTHO05D005431 1.4e-11 74.3 106 41.5
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 1.9e-11 73.9 57 63.2
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 2.5e-11 73.6 114 41.2
ECA233G1222 Erigeron canadensis HOM05D000892 ORTHO05D000750 9.4e-11 71.6 107 44.9
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 2.7e-10 70.1 144 39.6
Lsat_1_v5_gn_1_59220 Lactuca sativa HOM05D004622 ORTHO05D005431 3.6e-10 69.7 105 42.9
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 3.6e-10 69.7 117 43.6
AUR62036198 Chenopodium quinoa HOM05D004622 ORTHO05D005431 6.1e-10 68.9 105 39.0
TPR.G17219 Trifolium pratense HOM05D004622 ORTHO05D005431 7.9e-10 68.6 58 51.7
Os12g0155100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 2.3e-09 67.0 115 40.0
Aqoxy4G02752 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 3.0e-09 66.6 74 43.2
HPP92_003213 Vanilla planifolia HOM05D004622 ORTHO05D005431 3.9e-09 66.2 56 53.6
Os02g0534000 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 3.3e-08 63.2 56 53.6
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 3.3e-08 63.2 78 47.4
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 4.4e-08 62.8 113 32.7
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 7.4e-08 62.0 111 35.1
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 9.7e-08 61.6 125 35.2
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.7e-07 60.8 122 36.1
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 1.7e-07 60.8 111 32.4
Os11g0153500 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.7e-07 60.8 132 34.1
Os04g0413100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 2.2e-07 60.5 62 48.4
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 2.8e-07 60.1 122 36.1
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.8e-07 60.1 122 36.1
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.8e-07 60.1 122 36.1
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.8e-07 60.1 122 36.1
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.8e-07 60.1 122 36.1
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.8e-07 60.1 122 36.1
SpUn0002_0320 Schrenkiella parvula HOM05D006966 ORTHO05D008111 4.8e-07 59.3 113 32.7
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 6.3e-07 58.9 119 35.3
Hma1.2p1_0587F.1_g184220 Hydrangea macrophylla HOM05D004622 ORTHO05D005431 6.3e-07 58.9 121 37.2
Aa31LG11G10420 Aethionema arabicum HOM05D001105 ORTHO05D001870 8.2e-07 58.5 133 27.8
CsaV3_3G013540 Cucumis sativus L. HOM05D001105 ORTHO05D001870 8.2e-07 58.5 125 32.8
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 8.2e-07 58.5 112 30.4
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.1e-06 58.2 135 32.6
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 1.1e-06 58.2 113 32.7
Rhsim13G0112300 Rhododendron simsii HOM05D004622 ORTHO05D005431 1.1e-06 58.2 104 37.5
Zm00001eb083800 Zea mays HOM05D004622 ORTHO05D005431 1.4e-06 57.8 62 45.2
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 1.8e-06 57.4 123 34.1
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 2.4e-06 57.0 135 32.6
SEGI_39458 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 2.4e-06 57.0 112 32.1
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 3.1e-06 56.6 133 32.3
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 3.1e-06 56.6 129 31.8
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 3.1e-06 56.6 113 31.9
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 3.1e-06 56.6 122 35.2
Sed0020706 Sechium edule HOM05D001105 ORTHO05D001870 3.1e-06 56.6 165 30.3
A10p18420 Brassica napus HOM05D004622 ORTHO05D005431 4.1e-06 56.2 132 32.6
BraA10t43924Z Brassica rapa HOM05D004622 ORTHO05D005431 4.1e-06 56.2 132 32.6
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 4.1e-06 56.2 124 37.1
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 4.1e-06 56.2 129 31.8
Carub.0002s0866 Capsella rubella HOM05D006966 ORTHO05D008111 5.3e-06 55.8 117 32.5
AL6G33410 Arabidopsis lyrata HOM05D004622 ORTHO05D005431 7.0e-06 55.5 147 30.6
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 7.0e-06 55.5 109 33.9


User provided reference genes

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