Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 3.5e-68 261.5 134 100.0
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 2.0e-31 139.4 126 65.1
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 5.0e-27 124.8 119 60.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.1e-26 123.6 125 58.4
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 2.8e-25 119.0 121 57.9
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.1e-24 117.1 121 60.3
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.4e-24 116.7 118 57.6
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 1.8e-24 116.3 119 58.8
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 5.2e-24 114.8 119 57.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.8e-24 114.4 118 58.5
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.0e-23 112.8 119 56.3
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.6e-23 112.5 118 57.6
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.6e-23 112.5 118 57.6
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 9.8e-23 110.5 125 56.0
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 1.7e-22 109.8 122 56.6
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.7e-22 109.8 118 56.8
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 3.7e-22 108.6 121 57.0
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 4.9e-22 108.2 119 53.8
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 6.4e-22 107.8 122 54.9
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.1e-21 107.1 119 56.3
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.1e-21 107.1 119 56.3
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.4e-21 106.7 119 54.6
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.4e-21 105.9 119 57.1
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.4e-21 105.9 122 54.1
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.4e-21 105.9 118 55.1
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.2e-21 105.5 119 57.1
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 9.2e-21 104.0 123 52.8
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.2e-20 103.6 119 53.8
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.6e-20 103.2 118 54.2
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.1e-20 102.8 119 54.6
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 2.1e-20 102.8 119 54.6
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 2.1e-20 102.8 119 52.1
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.1e-20 102.8 123 52.8
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 3.5e-20 102.1 117 55.6
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.5e-20 102.1 118 52.5
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 3.5e-20 102.1 126 50.0
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 4.6e-20 101.7 119 55.5
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 4.6e-20 101.7 119 55.5
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 7.8e-20 100.9 118 51.7
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.3e-19 100.1 119 52.9
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.7e-19 99.8 120 52.5
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.7e-19 99.8 121 51.2
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 2.3e-19 99.4 120 54.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 2.3e-19 99.4 117 53.0
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 3.0e-19 99.0 118 50.8
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 3.9e-19 98.6 120 51.7
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 5.1e-19 98.2 121 53.7
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.5e-18 96.7 118 51.7
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.9e-18 96.3 123 52.8
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 1.9e-18 96.3 122 52.5
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 1.9e-18 96.3 117 51.3
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.5e-18 95.9 118 48.3
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 4.3e-18 95.1 100 59.0
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 4.3e-18 95.1 123 52.0
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 5.6e-18 94.7 120 51.7
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 7.3e-18 94.4 123 53.7
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 7.3e-18 94.4 123 53.7
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 7.3e-18 94.4 123 51.2
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.1e-17 92.8 123 51.2
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 2.8e-17 92.4 123 51.2
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.8e-17 92.4 123 51.2
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 3.6e-17 92.0 118 51.7
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 6.2e-17 91.3 122 49.2
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.4e-16 90.1 118 49.2
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.4e-16 90.1 114 50.9
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.8e-16 89.7 123 50.4
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 1.8e-16 89.7 136 46.3
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.8e-16 89.7 121 49.6
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 2.3e-16 89.4 123 52.0
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.1e-16 89.0 114 50.0
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 4.0e-16 88.6 123 52.0
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 5.2e-16 88.2 71 73.2
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 6.8e-16 87.8 129 48.1
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 6.8e-16 87.8 123 48.8
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 8.9e-16 87.4 114 48.2
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.6e-15 85.9 125 45.6
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 4.4e-15 85.1 123 49.6
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 5.8e-15 84.7 126 46.0
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 5.8e-15 84.7 116 48.3
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 1.7e-14 83.2 123 49.6
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 1.7e-14 83.2 127 47.2
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 2.9e-14 82.4 118 44.9
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 3.7e-14 82.0 120 45.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 3.7e-14 82.0 120 45.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 3.7e-14 82.0 120 45.0
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 6.4e-14 81.3 119 45.4
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 6.4e-14 81.3 119 46.2
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 6.4e-14 81.3 123 45.5
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 8.4e-14 80.9 115 48.7
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 8.4e-14 80.9 128 46.1
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 8.4e-14 80.9 124 46.0
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.1e-13 80.5 105 47.6
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.1e-13 80.5 114 46.5
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.4e-13 80.1 114 45.6
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.4e-13 79.3 126 45.2
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 7.1e-13 77.8 116 44.8
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 1.2e-12 77.0 116 44.8
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 1.2e-12 77.0 120 40.8
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 1.2e-12 77.0 121 47.9
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.6e-12 76.6 120 44.2
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 2.1e-12 76.3 114 43.9
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 2.1e-12 76.3 82 59.8
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.7e-12 75.9 118 43.2
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.7e-12 75.9 118 43.2
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 2.7e-12 75.9 120 44.2
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 2.7e-12 75.9 82 59.8
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.5e-12 75.5 121 44.6
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 4.6e-12 75.1 117 42.7
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 4.6e-12 75.1 118 47.5
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 1.0e-11 73.9 155 38.7
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.3e-11 73.6 46 78.3
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.3e-11 73.6 118 41.5
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.7e-11 73.2 142 39.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.3e-11 72.8 116 43.1
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 6.6e-11 71.2 120 41.7
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 6.6e-11 71.2 120 41.7
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 6.6e-11 71.2 120 41.7
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 1.9e-10 69.7 55 70.9
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 1.9e-10 69.7 118 41.5
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 2.5e-10 69.3 122 41.8
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 2.5e-10 69.3 117 37.6
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 9.6e-10 67.4 116 41.4
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.6e-09 66.6 122 41.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.1e-09 66.2 41 80.5
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.8e-08 63.2 113 36.3
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 2.4e-08 62.8 51 58.8
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.4e-08 62.8 114 37.7
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.1e-08 62.4 105 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 1.2e-07 60.5 130 34.6
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.2e-07 60.5 87 47.1
HPP92_003218 Vanilla planifolia HOM05D004934 ORTHO05D005924 4.4e-07 58.5 34 79.4
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 9.9e-07 57.4 34 82.4
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.7e-06 56.6 72 48.6
Gorai.006G112600 Gossypium raimondii HOM05D004934 ORTHO05D005924 8.4e-06 54.3 35 77.1


User provided reference genes

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