Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 2507.2 1271 100.0
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2171.7 1372 81.9
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2146.3 1378 80.8
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2024.6 1377 76.8
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2006.9 1394 75.1
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2004.9 1380 76.2
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 1986.1 1378 74.8
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 1982.6 1377 74.8
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 1977.2 1375 75.1
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 1977.2 1368 75.1
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 1969.5 1378 74.2
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 1969.1 1381 74.2
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 1960.3 1378 74.0
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 1957.6 1389 73.1
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 1943.3 1376 73.7
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1941.8 1375 73.7
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 1941.0 1377 73.9
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 1937.9 1381 73.5
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 1937.5 1376 73.9
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 1936.8 1375 72.9
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 1936.8 1375 73.9
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 1933.7 1374 73.4
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 1932.5 1372 72.9
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 1929.1 1377 73.6
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 1927.9 1377 73.1
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 1926.8 1373 72.8
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 1924.8 1377 73.3
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 1921.7 1373 72.6
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 1921.4 1374 72.9
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 1920.6 1377 73.3
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 1920.6 1375 72.7
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 1917.1 1374 72.7
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 1917.1 1376 72.7
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 1915.2 1376 72.6
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 1911.7 1375 72.9
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 1910.6 1378 71.5
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 1910.6 1379 72.4
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 1909.4 1381 71.8
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 1908.6 1419 70.5
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 1908.6 1377 73.0
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 1904.4 1378 72.1
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1902.1 1379 71.5
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1900.6 1376 72.9
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 1898.6 1379 71.4
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 1898.2 1446 69.2
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 1898.2 1379 71.3
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 1887.8 1379 71.0
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 1884.8 1470 68.0
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 1884.8 1379 70.6
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 1883.6 1387 71.2
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 1877.8 1381 70.3
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 1872.8 1372 69.9
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 1871.3 1377 71.3
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 1870.5 1411 71.0
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 1869.7 1375 71.1
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1869.0 1376 72.5
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 1863.6 1334 73.2
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 1861.3 1373 69.8
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 1858.6 1372 69.6
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 1855.5 1372 69.9
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1850.9 1392 71.0
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 1843.2 1393 70.0
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 1839.3 1389 69.7
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 1832.4 1377 70.2
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 1830.1 1390 69.2
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1826.2 1386 69.3
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1825.8 1387 69.4
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 1824.3 1387 69.4
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 1822.8 1403 68.6
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 1819.7 1387 69.2
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1818.9 1387 69.1
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1813.5 1337 72.0
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 1809.3 1387 68.7
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 1805.8 1373 69.1
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1803.1 1396 69.1
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 1798.1 1352 69.5
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 1786.9 1260 74.1
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1762.3 1323 69.5
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1759.2 1323 69.2
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 1753.4 1208 75.4
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1743.4 1315 69.7
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1742.6 1683 58.8
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1701.4 1288 70.1
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1650.6 1378 63.4
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1635.9 1456 61.5
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1633.2 1393 64.1
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1604.0 1379 61.7
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1601.3 1191 70.0
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1588.9 1364 61.3
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1419.1 937 77.7
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1404.4 1070 66.3
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1327.0 983 71.6
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1175.6 1369 47.1
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1157.9 797 74.8
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1114.4 1370 45.4
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1110.9 1387 44.5
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1101.3 1352 45.1
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1094.7 782 73.3
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1091.6 887 63.7
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1080.9 817 69.2
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 1.6e-308 1063.1 768 72.1
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.4e-288 996.9 697 74.6
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 5.0e-225 785.8 806 50.2
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.2e-218 764.6 570 69.8
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 9.4e-216 755.0 606 66.3
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 1.1e-187 661.8 514 67.3
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 5.1e-161 573.2 461 67.2
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 6.0e-138 496.5 515 52.8
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 3.3e-136 490.7 521 55.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.5e-128 465.3 1481 25.1
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.8e-116 424.1 531 46.1
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 3.2e-107 394.4 525 46.9
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.5e-93 347.8 351 55.3
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 4.5e-93 347.4 276 64.5
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 5.0e-84 317.4 222 70.3
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.7e-76 292.4 401 44.6
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.0e-60 240.0 140 82.1
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.0e-60 238.4 147 80.3
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.9e-59 235.7 284 47.2
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 2.9e-47 195.3 139 69.8
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 7.3e-43 180.6 128 64.8
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 6.9e-41 174.1 114 77.2
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 2.3e-36 159.1 106 76.4
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.0e-32 146.0 145 49.7
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 8.4e-31 140.6 89 70.8
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.2e-30 138.7 135 61.5
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 1.0e-28 133.7 83 79.5
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.9e-27 129.4 153 55.6
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 6.2e-26 124.4 112 58.9
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 2.0e-24 119.4 113 58.4
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 4.5e-24 118.2 86 69.8
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.0e-23 117.1 250 36.8
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 2.9e-23 115.5 128 48.4
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.1e-21 109.4 124 50.8
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 6.1e-21 107.8 107 51.4
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.9e-21 107.5 85 64.7
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.3e-17 94.7 53 88.7
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 7.2e-14 84.3 83 54.2
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 9.4e-14 84.0 52 84.6
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.6e-13 83.2 89 47.2
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 7.9e-13 80.9 52 78.8
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 8.8e-12 77.4 41 92.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 3.3e-11 75.5 42 90.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 3.7e-10 72.0 100 41.0
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 3.1e-09 68.9 74 48.6
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 1.5e-08 66.6 56 55.4
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.5e-08 66.6 56 55.4
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 3.4e-08 65.5 44 75.0
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 3.4e-08 65.5 44 75.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.4e-08 65.5 44 75.0
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.4e-08 65.5 44 75.0
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 3.4e-08 65.5 44 75.0
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 3.8e-07 62.0 43 72.1
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 3.8e-07 62.0 54 55.6


User provided reference genes

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