Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold175G39349 Striga asiatica HOM05D000247 ORTHO05D008926 1.2e-106 389.8 198 100.0
SGA_v2.0_scaffold298G47701 Striga asiatica HOM05D000247 ORTHO05D008926 1.1e-73 280.4 199 76.9
MSTRG.7604 Avicennia marina HOM05D000247 ORTHO05D008926 1.4e-65 253.4 199 71.4
Migut.M02000 Erythranthe guttata HOM05D000247 ORTHO05D008926 9.0e-57 224.2 199 64.3
CAN.G1299.10 Capsicum annuum HOM05D000247 ORTHO05D008926 1.5e-51 206.8 206 60.7
Nitab4.5_0000443g0110 Nicotiana tabacum HOM05D000247 ORTHO05D008926 3.3e-51 205.7 203 59.6
Sopen02g017640 Solanum pennellii HOM05D000247 ORTHO05D008926 2.8e-50 202.6 200 60.0
Solyc02g068500.3 Solanum lycopersicum HOM05D000247 ORTHO05D008926 6.3e-50 201.4 200 60.0
PGSC0003DMG402010449 Solanum tuberosum HOM05D000247 ORTHO05D008926 1.1e-49 200.7 200 59.0
unitig_748.g8074 Utricularia gibba HOM05D000247 ORTHO05D008926 4.1e-49 198.7 202 58.9
Cc09_g05440 Coffea canephora HOM05D000247 ORTHO05D008926 4.5e-48 195.3 203 56.2
GSVIVG01012129001 Vitis vinifera HOM05D000247 ORTHO05D008926 1.4e-41 173.7 180 56.1
GSVIVG01012130001 Vitis vinifera HOM05D000247 ORTHO05D008926 1.4e-41 173.7 180 56.1
Peaxi162Scf00199g00089 Petunia axillaris HOM05D000247 ORTHO05D008926 2.6e-40 169.5 283 42.4
arahy.Tifrunner.gnm1.ann1.LMJ0T6 Arachis hypogaea HOM05D000247 ORTHO05D008926 1.3e-39 167.2 145 62.8
arahy.Tifrunner.gnm1.ann1.N4QHWM Arachis hypogaea HOM05D000247 ORTHO05D008926 1.3e-39 167.2 145 62.8
Hma1.2p1_1207F.1_g267030 Hydrangea macrophylla HOM05D000247 ORTHO05D008926 7.2e-38 161.4 118 66.9
Glyma.05G132600 Glycine max HOM05D000247 ORTHO05D008926 1.6e-37 160.2 148 58.1
Glyma.08G087100 Glycine max HOM05D000247 ORTHO05D008926 1.6e-37 160.2 148 58.8
TAR627G0960 Trochodendron aralioides HOM05D000247 ORTHO05D008926 1.6e-37 160.2 117 67.5
CANSAT35G1610 Cannabis sativa HOM05D000247 ORTHO05D008926 2.7e-37 159.5 205 47.8
SalBow8G0825 Salvia bowleyana HOM05D032565 ORTHO05D008926 1.0e-36 157.5 356 34.6
DCAR_001289 Daucus carota HOM05D000247 ORTHO05D008926 2.3e-36 156.4 125 61.6
HanXRQChr09g0258391 Helianthus annuus HOM05D000247 ORTHO05D008926 2.3e-36 156.4 202 47.5
CiPaw.09G073900 Carya illinoinensis HOM05D000247 ORTHO05D008926 3.9e-36 155.6 140 58.6
Psat7g088680 Pisum sativum HOM05D000247 ORTHO05D008926 3.9e-36 155.6 145 55.2
Manes.03G075166 Manihot esculenta HOM05D000247 ORTHO05D008926 6.7e-36 154.8 134 55.2
Phvul.002G190200 Phaseolus vulgaris HOM05D000247 ORTHO05D008926 2.0e-35 153.3 145 57.9
FAN16G3275 Fragaria x ananassa HOM05D000247 ORTHO05D008926 3.3e-35 152.5 124 59.7
FAN25G3094 Fragaria x ananassa HOM05D000247 ORTHO05D008926 3.3e-35 152.5 124 59.7
PSO541G6344 Papaver somniferum HOM05D000247 ORTHO05D008926 5.7e-35 151.8 157 50.3
Lj4g0027483 Lotus japonicus HOM05D000247 ORTHO05D008926 7.4e-35 151.4 128 57.8
Nitab4.5_0007772g0020 Nicotiana tabacum HOM05D000247 ORTHO05D008926 7.4e-35 151.4 88 83.0
TPR.G31242 Trifolium pratense HOM05D000247 ORTHO05D008926 7.4e-35 151.4 145 55.2
PSO675G8821 Papaver somniferum HOM05D000247 ORTHO05D008926 3.7e-34 149.1 134 56.0
Prupe.4G115800 Prunus persica HOM05D000247 ORTHO05D008926 3.7e-34 149.1 121 61.2
FvH4_3g12700 Fragaria vesca HOM05D000247 ORTHO05D008926 1.1e-33 147.5 121 59.5
DCAR_007780 Daucus carota HOM05D000247 ORTHO05D008926 1.4e-33 147.1 98 69.4
Rhsim13G0129200 Rhododendron simsii HOM05D000247 ORTHO05D008926 1.4e-33 147.1 153 52.3
FAN16G1213 Fragaria x ananassa HOM05D000247 ORTHO05D008926 3.1e-33 146.0 123 58.5
CsaV3_6G052830 Cucumis sativus L. HOM05D000247 ORTHO05D008926 5.3e-33 145.2 179 46.9
Medtr4g094690 Medicago truncatula HOM05D000247 ORTHO05D008926 9.1e-33 144.4 145 52.4
MD10G1228900 Malus domestica HOM05D000247 ORTHO05D008926 2.0e-32 143.3 121 57.9
Atru.chr10.414 Acer truncatum HOM05D000247 ORTHO05D008926 3.5e-32 142.5 129 55.8
MD17G1134000 Malus domestica HOM05D000247 ORTHO05D008926 3.5e-32 142.5 120 57.5
Nn7g38276 Nelumbo nucifera HOM05D000247 ORTHO05D008926 7.7e-32 141.4 143 53.1
MELO3C007026.2 Cucumis melo HOM05D000247 ORTHO05D008926 1.0e-31 141.0 198 44.9
Dinv04337 Davidia involucrata HOM05D000247 ORTHO05D008926 1.0e-31 141.0 172 49.4
RcHm_v2.0_Chr5g0020681 Rosa chinensis HOM05D000247 ORTHO05D008926 1.3e-31 140.6 124 58.1
Sc24g0002990 Simmondsia chinensis HOM05D000247 ORTHO05D008926 2.2e-31 139.8 141 51.1
Ciclev10016549m.g Citrus clementina HOM05D000247 ORTHO05D008926 5.0e-31 138.7 145 51.7
Aa31LG2G14990 Aethionema arabicum HOM05D000247 ORTHO05D008926 6.5e-31 138.3 195 41.0
Sed0006578 Sechium edule HOM05D000247 ORTHO05D008926 8.5e-31 137.9 193 44.6
HPP92_009500 Vanilla planifolia HOM05D000247 ORTHO05D008926 1.5e-30 137.1 141 52.5
Eucgr.D00028 Eucalyptus grandis HOM05D000247 ORTHO05D008926 1.9e-30 136.7 143 51.0
CDE06G1703 Ceratophyllum demersum HOM05D000247 ORTHO05D008926 4.2e-30 135.6 134 53.0
Lalb_Chr07g0188361 Lupinus albus HOM05D000247 ORTHO05D008926 4.2e-30 135.6 112 55.4
THA.LOC104798563 Tarenaya hassleriana HOM05D000247 ORTHO05D008926 4.2e-30 135.6 194 41.2
Potri.001G159000 Populus trichocarpa HOM05D000247 ORTHO05D008926 1.6e-29 133.7 199 41.2
AT2G35010 Arabidopsis thaliana HOM05D000247 ORTHO05D008926 2.1e-29 133.3 141 46.8
AL4G31030 Arabidopsis lyrata HOM05D000247 ORTHO05D008926 2.7e-29 132.9 141 47.5
ClCG01G025600 Citrullus lanatus HOM05D000247 ORTHO05D008926 3.6e-29 132.5 225 42.7
CARHR030550 Cardamine hirsuta HOM05D000247 ORTHO05D008926 6.1e-29 131.7 134 50.7
Thhalv10017264m.g Eutrema salsugineum HOM05D000247 ORTHO05D008926 4.0e-28 129.0 178 42.7
Carub.0004s1670 Capsella rubella HOM05D000247 ORTHO05D008926 6.7e-28 128.3 168 42.3
BcaC05g27133 Brassica carinata HOM05D000247 ORTHO05D008926 8.8e-28 127.9 115 51.3
PGR004G1671 Punica granatum HOM05D000247 ORTHO05D008926 8.8e-28 127.9 192 46.4
CARHR129170 Cardamine hirsuta HOM05D000247 ORTHO05D008926 1.5e-27 127.1 138 46.4
TWI38G1568 Tripterygium wilfordii HOM05D000247 ORTHO05D008926 1.5e-27 127.1 100 58.0
AL1G45430 Arabidopsis lyrata HOM05D000247 ORTHO05D008926 2.0e-27 126.7 134 48.5
AT1G31020 Arabidopsis thaliana HOM05D000247 ORTHO05D008926 2.0e-27 126.7 134 48.5
C05p30180 Brassica napus HOM05D000247 ORTHO05D008926 2.0e-27 126.7 115 50.4
Sp1g26880 Schrenkiella parvula HOM05D000247 ORTHO05D008926 2.0e-27 126.7 138 47.8
Thecc.02G276000 Theobroma cacao HOM05D000247 ORTHO05D008926 2.6e-27 126.3 149 46.3
Lsat_1_v5_gn_8_117960 Lactuca sativa HOM05D000247 ORTHO05D008926 3.3e-27 125.9 203 43.8
Thhalv10008976m.g Eutrema salsugineum HOM05D000247 ORTHO05D008926 4.4e-27 125.6 134 47.8
BcaB07g32760 Brassica carinata HOM05D000267 ORTHO05D008926 7.5e-27 124.8 115 50.4
A09p35210 Brassica napus HOM05D000247 ORTHO05D008926 1.3e-26 124.0 136 44.9
BraA09t39048Z Brassica rapa HOM05D000247 ORTHO05D008926 1.7e-26 123.6 136 44.9
Zm00001eb389850 Zea mays HOM05D000247 ORTHO05D008926 2.2e-26 123.2 142 43.7
BolC5t31755H Brassica oleracea HOM05D000247 ORTHO05D008926 2.8e-26 122.9 195 37.4
BcaC02g07742 Brassica carinata HOM05D000247 ORTHO05D008926 3.7e-26 122.5 142 44.4
Carub.0001s2941 Capsella rubella HOM05D000247 ORTHO05D008926 3.7e-26 122.5 134 47.0
Sp4g17290 Schrenkiella parvula HOM05D000247 ORTHO05D008926 1.8e-25 120.2 166 39.8
Os06g0665900 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D008926 2.0e-24 116.7 127 44.1
FAN21G2895 Fragaria x ananassa HOM05D000247 ORTHO05D008926 1.7e-23 113.6 122 49.2
BcaB06g28813 Brassica carinata HOM05D000247 ORTHO05D008926 1.5e-22 110.5 177 40.1
BraA04t18174Z Brassica rapa HOM05D000247 ORTHO05D008926 1.5e-22 110.5 177 39.5
Ah.15g091910 Amaranthus hybridus HOM05D000247 ORTHO05D008926 1.2e-21 107.5 142 45.8
Gohir.D02G151400 Gossypium hirsutum HOM05D000247 ORTHO05D008926 1.2e-21 107.5 140 40.7
Gorai.005G169900 Gossypium raimondii HOM05D000247 ORTHO05D008926 2.1e-21 106.7 140 40.7
Gohir.A03G128000 Gossypium hirsutum HOM05D000247 ORTHO05D008926 1.0e-20 104.4 203 33.5
Hund26669 Selenicereus undatus HOM05D000247 ORTHO05D008926 1.5e-19 100.5 146 42.5
Duzib251G0091 Durio zibethinus HOM05D000247 ORTHO05D008926 4.4e-19 99.0 119 40.3
MD05G1092600 Malus domestica HOM05D000247 ORTHO05D008926 9.8e-19 97.8 88 55.7
COL.COLO4_12826 Corchorus olitorius HOM05D000247 ORTHO05D008926 1.3e-18 97.4 101 45.5
QL11p013075 Quercus lobata HOM05D000247 ORTHO05D008926 6.3e-18 95.1 94 53.2
PSO675G1907 Papaver somniferum HOM05D000247 ORTHO05D008926 2.4e-17 93.2 92 51.1
ATR0763G171 Amborella trichopoda HOM05D000247 ORTHO05D008926 4.1e-17 92.4 114 43.0
MBI02_g26994_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D008926 1.6e-16 90.5 145 41.4
Aqoxy5G00005 Aquilegia oxysepala HOM05D000247 ORTHO05D008926 2.0e-16 90.1 71 59.2
C04p64110 Brassica napus HOM05D007600 ORTHO05D009132 1.9e-14 83.6 115 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2317 Anthoceros agrestis HOM05D030025 ORTHO05D026625 3.2e-14 82.8 114 32.5
arahy.Tifrunner.gnm1.ann1.ZI5CY8 Arachis hypogaea HOM05D001920 ORTHO05D004895 5.5e-14 82.0 73 54.8
Pp3c19_1800 Physcomitrium patens HOM05D000247 ORTHO05D000288 7.2e-14 81.6 139 33.8
Sabra01G0132800 Salix brachista HOM05D000247 ORTHO05D008926 9.4e-14 81.3 71 52.1
SHI32269 Sapria himalayana HOM05D000247 ORTHO05D008926 9.4e-14 81.3 131 37.4
SEGI_19528 Sequoiadendron giganteum HOM05D000247 ORTHO05D008926 9.4e-14 81.3 97 42.3
Haze_06153 Corylus avellana HOM05D000247 ORTHO05D008926 1.0e-12 77.8 75 53.3
Mapoly0182s0007 Marchantia polymorpha HOM05D000247 ORTHO05D000288 1.0e-12 77.8 125 34.4
A04p26690 Brassica napus HOM05D007600 ORTHO05D009132 5.2e-12 75.5 150 36.7
CBR_g49686 Chara braunii HOM05D000247 ORTHO05D000288 4.4e-11 72.4 112 33.0
AUR62040480 Chenopodium quinoa HOM05D000247 ORTHO05D008926 1.3e-10 70.9 89 46.1
Cre05.g248500 Chlamydomonas reinhardtii HOM05D000247 ORTHO05D000288 1.3e-10 70.9 126 34.1
Sc15g0003390 Simmondsia chinensis HOM05D000247 ORTHO05D000288 2.8e-10 69.7 110 30.9
MD15G1415300 Malus domestica HOM05D000247 ORTHO05D008926 8.3e-10 68.2 122 31.1
Migut.O00229 Erythranthe guttata HOM05D000247 ORTHO05D003114 2.4e-09 66.6 99 37.4
PSO017G4642 Papaver somniferum HOM05D000247 ORTHO05D000288 2.4e-09 66.6 101 32.7
PSO170G3570 Papaver somniferum HOM05D000247 ORTHO05D000288 4.1e-09 65.9 143 30.8
unitig_26.g9840 Utricularia gibba HOM05D000247 ORTHO05D000288 4.1e-09 65.9 98 32.7
Cpa.g.sc3102.2 Carica papaya HOM05D000247 ORTHO05D008926 5.4e-09 65.5 54 61.1
MELO3C010975.2 Cucumis melo HOM05D000247 ORTHO05D000288 7.0e-09 65.1 105 31.4
HPP92_001670 Vanilla planifolia HOM05D000247 ORTHO05D000288 7.0e-09 65.1 121 29.8
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.2e-08 64.3 96 36.5
Atru.chr13.386 Acer truncatum HOM05D000247 ORTHO05D000288 2.0e-08 63.5 108 27.8
HPP92_001642 Vanilla planifolia HOM05D000247 ORTHO05D000288 2.0e-08 63.5 121 30.6
Glyma.04G028500 Glycine max HOM05D000247 ORTHO05D000288 4.5e-08 62.4 114 25.4
Thhalv10003293m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 7.7e-08 61.6 98 27.6
Glyma.02G023400 Glycine max HOM05D000247 ORTHO05D000288 1.0e-07 61.2 124 30.6
Lsat_1_v5_gn_4_116761 Lactuca sativa HOM05D000247 ORTHO05D000288 1.0e-07 61.2 97 30.9
MD15G1415400 Malus domestica HOM05D000247 ORTHO05D245664 1.0e-07 61.2 109 26.6
SMO203G0138 Selaginella moellendorffii HOM05D000247 ORTHO05D000288 1.0e-07 61.2 113 26.5
ECA232G0023 Erigeron canadensis HOM05D000247 ORTHO05D000288 1.7e-07 60.5 90 32.2
Ca_07773_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 2.3e-07 60.1 101 31.7
Ca_07780_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 2.3e-07 60.1 101 31.7
MD10G1338300 Malus domestica HOM05D027015 ORTHO05D246306 2.3e-07 60.1 125 30.4
Nn5g26816 Nelumbo nucifera HOM05D000247 ORTHO05D000288 2.3e-07 60.1 125 25.6
PRCOL_00005210 Prasinoderma coloniale HOM05D000247 ORTHO05D000288 2.9e-07 59.7 97 28.9
unitig_749.g13851 Utricularia gibba HOM05D000247 ORTHO05D000288 2.9e-07 59.7 106 27.4
SGA_v2.0_scaffold11G05848 Striga asiatica HOM05D000247 ORTHO05D000288 3.8e-07 59.3 102 24.5
HPP92_017498 Vanilla planifolia HOM05D000247 ORTHO05D000288 5.0e-07 58.9 103 26.2
Sabra05G0179400 Salix brachista HOM05D000247 ORTHO05D000288 8.6e-07 58.2 95 29.5
AUR62026467 Chenopodium quinoa HOM05D000247 ORTHO05D000288 1.5e-06 57.4 98 31.6
SHI08607 Sapria himalayana HOM05D000247 ORTHO05D000288 1.9e-06 57.0 76 34.2
SGA_v2.0_scaffold201G41340 Striga asiatica HOM05D000247 ORTHO05D000288 1.9e-06 57.0 106 25.5
Sc20g0007130 Simmondsia chinensis HOM05D000247 ORTHO05D000288 2.5e-06 56.6 102 29.4
TWI77G0033 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 2.5e-06 56.6 116 29.3
Os01g0168200 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D000288 3.3e-06 56.2 98 28.6
Sabra04G0154700 Salix brachista HOM05D000247 ORTHO05D000288 3.3e-06 56.2 98 30.6
ATR1127G053 Amborella trichopoda HOM05D000247 ORTHO05D000288 4.3e-06 55.8 104 27.9
RcHm_v2.0_Chr3g0492941 Rosa chinensis HOM05D023878 ORTHO05D342523 4.3e-06 55.8 103 31.1
Duzib151G0468 Durio zibethinus HOM05D000247 ORTHO05D000288 5.6e-06 55.5 110 27.3
Solyc05g006855.1 Solanum lycopersicum HOM05D000247 ORTHO05D000288 5.6e-06 55.5 115 25.2
Sopen05g002840 Solanum pennellii HOM05D000247 ORTHO05D000288 5.6e-06 55.5 115 25.2
RcHm_v2.0_Chr3g0492811 Rosa chinensis HOM05D023878 ORTHO05D348104 7.3e-06 55.1 96 33.3


User provided reference genes

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