Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 4.6e-244 847.4 416 100.0
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 5.1e-187 657.9 406 80.0
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 1.2e-183 646.7 401 79.1
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 2.9e-182 642.1 406 79.3
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.3e-169 600.1 401 74.1
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.3e-169 600.1 401 74.1
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 4.8e-169 598.2 412 72.1
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.8e-168 596.3 409 73.1
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.2e-167 593.6 406 73.9
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.2e-167 593.6 408 72.3
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.6e-167 593.2 405 73.6
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.6e-167 593.2 342 81.9
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.7e-167 592.4 409 72.1
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 4.5e-167 591.7 409 72.1
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 7.7e-167 590.9 413 70.7
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.0e-166 590.5 412 71.4
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.3e-166 590.1 341 82.7
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.7e-166 589.7 416 71.2
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 8.5e-166 587.4 341 81.8
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.5e-165 586.6 412 71.6
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.9e-165 586.3 406 70.9
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 3.2e-165 585.5 370 75.1
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 3.2e-165 585.5 370 75.1
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 5.5e-165 584.7 406 70.7
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 9.4e-165 583.9 413 69.5
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.6e-164 583.2 406 70.2
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 2.1e-164 582.8 342 78.9
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 2.7e-164 582.4 413 70.0
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 4.7e-164 581.6 417 70.0
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 4.7e-164 581.6 407 70.5
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.8e-163 579.7 410 71.0
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 3.0e-163 578.9 408 69.1
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 4.0e-163 578.6 402 71.6
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 6.8e-163 577.8 408 70.1
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 8.8e-163 577.4 341 79.5
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.4e-162 575.1 342 80.1
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 9.8e-162 573.9 434 66.8
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.3e-161 573.5 365 75.6
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.3e-161 573.5 445 66.5
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 3.7e-161 572.0 418 68.7
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.8e-161 571.6 433 66.5
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 6.3e-161 571.2 385 74.3
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 6.3e-161 571.2 409 69.2
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 8.3e-161 570.9 410 70.0
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.1e-160 570.5 399 70.4
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.4e-160 570.1 413 68.8
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.4e-160 570.1 429 67.8
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 2.4e-160 569.3 411 68.6
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 7.0e-160 567.8 390 71.3
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.2e-159 567.0 398 70.1
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 4.5e-159 565.1 402 69.7
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 4.5e-159 565.1 404 67.8
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 5.9e-159 564.7 390 70.3
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 7.7e-159 564.3 398 70.4
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.7e-158 563.1 336 78.9
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 3.8e-158 562.0 409 68.9
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 3.8e-158 562.0 430 67.0
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 5.0e-158 561.6 412 67.7
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 5.0e-158 561.6 409 68.5
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 6.5e-158 561.2 366 74.0
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.5e-157 560.1 398 69.8
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.5e-157 560.1 411 67.9
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.9e-157 559.7 376 73.4
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 2.5e-157 559.3 395 71.4
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.6e-156 556.6 383 71.8
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.6e-156 556.6 369 72.6
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.6e-156 556.6 412 68.2
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.1e-156 556.2 342 77.8
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 2.1e-156 556.2 390 70.5
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 3.6e-156 555.4 401 68.8
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 3.6e-156 555.4 387 70.5
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 8.0e-156 554.3 418 66.7
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.8e-155 553.1 347 76.1
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.2e-154 550.4 341 77.1
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.5e-154 550.1 363 73.0
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 1.5e-154 550.1 373 72.4
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 2.0e-154 549.7 341 76.8
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 7.5e-154 547.7 340 76.2
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 9.8e-154 547.4 387 69.3
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-153 547.0 353 74.8
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.2e-153 546.2 402 67.7
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-153 545.8 339 76.1
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 2.8e-153 545.8 405 67.9
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.7e-153 545.4 402 67.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 3.7e-153 545.4 414 67.6
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 8.3e-153 544.3 367 72.2
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 8.3e-153 544.3 402 66.9
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.1e-152 543.9 345 75.9
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 1.4e-152 543.5 346 75.7
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.2e-151 540.4 357 72.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 2.7e-151 539.3 396 68.4
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 3.5e-151 538.9 355 73.5
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 4.5e-151 538.5 362 72.4
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 7.7e-151 537.7 350 74.0
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 7.7e-151 537.7 351 73.2
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.3e-150 537.0 368 71.7
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 3.8e-150 535.4 408 67.4
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 5.0e-150 535.0 340 73.5
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 8.6e-150 534.3 375 70.9
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.6e-148 530.0 296 83.4
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 6.1e-148 528.1 341 74.8
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 4.0e-147 525.4 356 68.8
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 2.6e-146 522.7 348 74.4
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 2.6e-146 522.7 348 74.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 4.4e-146 521.9 385 67.3
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 4.4e-146 521.9 348 74.4
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 7.5e-146 521.2 351 73.5
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.9e-145 519.2 384 66.9
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.8e-144 516.5 333 73.3
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.1e-141 507.3 342 71.6
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 2.5e-141 506.1 283 82.7
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 9.5e-141 504.2 341 72.1
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 8.0e-140 501.1 399 63.7
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 5.2e-139 498.4 304 77.0
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 5.2e-139 498.4 304 77.0
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-139 498.0 402 63.9
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 4.4e-138 495.4 328 70.1
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 4.9e-137 491.9 296 77.0
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 2.7e-135 486.1 388 61.1
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-134 482.6 423 58.9
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.4e-131 473.8 334 67.1
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.2e-130 470.7 441 59.2
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 2.2e-129 466.5 402 60.7
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-128 464.2 277 76.9
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.2e-127 460.7 339 64.0
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.0e-126 456.1 339 67.6
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.2e-121 439.9 326 66.9
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 3.6e-116 422.5 345 61.7
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 4.0e-115 419.1 341 58.9
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.9e-109 400.2 261 74.7
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 2.9e-105 386.3 317 59.6
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.3e-102 377.5 295 59.7
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.1e-101 374.4 324 61.1
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 7.4e-93 345.1 272 64.3
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.5e-85 320.9 188 81.4
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.6e-82 310.1 288 60.1
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 8.5e-81 305.1 306 54.9
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 5.7e-77 292.4 251 59.8
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.2e-74 284.6 157 84.7
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.8e-73 279.6 161 80.1
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.8e-70 270.8 275 52.7
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 5.7e-61 239.2 142 76.1
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 2.7e-55 220.3 299 43.5
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 9.7e-53 211.8 236 50.0
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.5e-50 203.4 218 51.4
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 9.8e-45 185.3 282 40.4
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 2.7e-42 177.2 116 73.3
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 7.7e-42 175.6 128 66.4
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-40 171.8 137 66.4
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-37 161.4 137 65.0
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-37 161.4 137 65.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-36 156.4 122 63.1
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 1.8e-30 137.9 231 37.2
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-27 125.9 158 46.8
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-27 125.9 158 46.8
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 2.0e-21 107.8 169 39.1
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 6.0e-18 96.3 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 6.0e-18 96.3 53 75.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 3.2e-11 73.9 51 66.7
SGA_v2.0_scaffold80G25734 Striga asiatica HOM05D040281 ORTHO05D035895 1.6e-07 61.6 38 84.2
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 2.1e-07 61.2 47 63.8
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 1.1e-06 58.9 41 70.7
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-06 58.2 38 71.1
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 4.0e-06 57.0 47 57.4


User provided reference genes

Program Settings