Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 5.9e-250 867.1 439 100.0
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 1.2e-146 523.9 437 67.0
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.3e-135 487.3 441 62.1
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 6.7e-129 464.9 443 60.9
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 5.7e-128 461.8 438 59.4
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 2.2e-127 459.9 442 59.7
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.6e-125 453.8 432 61.8
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.6e-125 453.8 441 58.7
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 5.9e-125 451.8 471 58.0
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 7.2e-123 444.9 469 57.1
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 8.8e-121 438.0 441 56.7
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 1.3e-119 434.1 442 57.5
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 2.2e-119 433.3 442 59.5
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 4.8e-119 432.2 442 57.9
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.1e-118 431.0 444 58.1
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.1e-118 429.5 422 59.2
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 7.0e-118 428.3 441 56.2
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.6e-117 427.2 442 56.8
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 2.0e-117 426.8 418 56.9
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.0e-117 426.8 440 55.9
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 5.9e-117 425.2 444 57.9
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 1.0e-116 424.5 441 57.8
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.0e-116 424.5 441 57.6
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.0e-116 424.5 441 57.6
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 6.5e-116 421.8 439 58.3
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.5e-115 420.6 443 57.3
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.4e-115 417.9 441 57.1
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.2e-114 417.5 420 56.9
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.2e-114 417.5 468 55.3
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 6.1e-114 415.2 488 52.9
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 6.1e-114 415.2 444 56.5
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 2.3e-113 413.3 480 52.5
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.5e-112 410.6 441 56.9
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 3.4e-112 409.5 444 55.6
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 4.4e-112 409.1 442 54.3
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 7.5e-112 408.3 442 57.0
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 9.8e-112 407.9 442 56.3
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 9.8e-112 407.9 449 54.3
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.2e-111 406.8 453 53.2
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 4.8e-111 405.6 442 55.7
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 4.8e-111 405.6 440 54.1
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.8e-111 405.6 442 54.3
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.1e-110 404.4 419 57.5
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.4e-110 404.1 449 54.8
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.4e-110 404.1 442 55.0
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 3.5e-109 399.4 420 56.0
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 3.5e-109 399.4 448 54.5
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 5.9e-109 398.7 443 54.6
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.9e-108 396.4 416 55.8
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.9e-108 396.4 416 55.3
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 2.9e-108 396.4 443 55.5
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 6.6e-108 395.2 420 55.5
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.5e-107 394.0 429 53.8
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.5e-107 393.3 462 53.0
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 3.3e-107 392.9 442 55.2
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.5e-107 392.1 441 53.1
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 7.2e-107 391.7 440 53.9
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 7.2e-107 391.7 418 54.1
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 9.5e-107 391.3 420 56.0
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 4.7e-106 389.0 419 56.8
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.0e-105 387.9 419 55.6
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 6.8e-105 385.2 441 53.5
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 1.7e-103 380.6 426 54.9
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 3.7e-103 379.4 422 55.2
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 2.4e-102 376.7 419 53.7
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 2.4e-102 376.7 441 54.2
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 3.5e-101 372.9 425 52.7
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 5.9e-101 372.1 442 53.8
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 6.6e-100 368.6 441 52.6
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 2.5e-99 366.7 442 51.8
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.3e-99 365.9 420 51.9
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.6e-98 364.0 448 52.7
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 2.1e-98 363.6 451 52.8
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 2.1e-98 363.6 418 52.4
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 4.7e-98 362.5 442 51.4
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 6.1e-98 362.1 447 50.6
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 6.1e-98 362.1 420 52.6
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.4e-96 356.3 422 50.7
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 4.4e-96 355.9 444 50.9
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 5.8e-96 355.5 419 51.8
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.9e-94 350.5 444 50.5
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.6e-93 347.4 427 52.0
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.6e-93 347.4 428 51.2
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 2.0e-93 347.1 428 51.2
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 2.0e-93 347.1 436 51.1
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 4.3e-91 339.3 420 50.0
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 2.8e-90 336.7 441 49.2
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 4.7e-90 335.9 420 49.5
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 6.2e-90 335.5 429 48.5
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 1.8e-89 334.0 425 50.1
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.3e-89 333.6 445 48.5
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 2.3e-89 333.6 444 48.9
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 5.2e-89 332.4 447 49.7
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 2.6e-88 330.1 431 50.3
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.2e-87 327.0 421 49.2
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.4e-86 323.6 444 49.8
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 3.2e-86 323.2 480 45.0
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 5.4e-86 322.4 441 47.4
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 2.1e-85 320.5 441 48.8
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 2.7e-85 320.1 445 47.4
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 8.6e-84 315.1 418 47.8
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 7.3e-83 312.0 446 46.9
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.6e-82 310.8 389 49.9
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 1.6e-82 310.8 445 47.4
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 2.8e-82 310.1 455 45.5
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 3.6e-82 309.7 421 48.2
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.8e-81 307.4 424 47.9
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 3.1e-81 306.6 446 46.2
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 3.1e-81 306.6 446 46.2
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 5.2e-81 305.8 326 55.2
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 2.6e-80 303.5 419 46.5
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.3e-79 301.2 394 48.5
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.7e-79 300.8 424 46.9
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 2.2e-79 300.4 423 46.8
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 3.7e-79 299.7 427 45.4
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 4.9e-79 299.3 422 46.0
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.6e-77 294.3 570 39.8
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 2.8e-74 283.5 404 46.3
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 2.8e-74 283.5 452 43.1
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.8e-74 283.5 377 47.7
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 3.6e-74 283.1 423 46.1
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.7e-74 282.7 300 56.3
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 4.0e-73 279.6 424 44.6
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 6.4e-71 272.3 540 38.7
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 2.1e-69 267.3 451 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 4.3e-67 259.6 454 41.0
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 7.6e-64 248.8 301 51.2
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 9.3e-62 241.9 299 51.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.2e-61 241.5 454 39.6
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.8e-57 227.6 277 51.3
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.3e-55 221.5 204 59.3
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 2.4e-54 217.2 439 37.8
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.0e-52 210.3 332 45.8
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.0e-52 210.3 332 45.8
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 6.9e-49 199.1 213 59.2
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 7.6e-48 195.7 690 29.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.9e-47 193.0 100 87.0
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.9e-47 193.0 100 87.0
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 8.4e-47 192.2 100 90.0
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 4.2e-46 189.9 379 39.8
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 4.1e-41 173.3 318 39.3
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 1.4e-38 164.9 95 84.2
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 8.7e-36 155.6 422 32.9
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 4.8e-34 149.8 231 44.2
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 9.0e-33 145.6 249 46.6
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 6.5e-31 139.4 87 80.5
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 5.5e-30 136.3 249 43.0
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 3.1e-25 120.6 73 76.7
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 5.3e-25 119.8 84 72.6
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 6.5e-23 112.8 101 50.5
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 3.2e-22 110.5 98 51.0
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 7.2e-22 109.4 91 60.4
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.8e-20 104.8 67 76.1
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 2.6e-19 100.9 165 46.1
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.8e-18 96.7 432 26.9
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 1.6e-13 81.6 110 41.8
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 2.0e-11 74.7 76 53.9
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 2.7e-08 64.3 74 48.6


User provided reference genes

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