Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold175G39327 Striga asiatica HOM05D005342 ORTHO05D006925 1.2e-123 446.4 220 100.0
Migut.M02010 Erythranthe guttata HOM05D005342 ORTHO05D006925 3.5e-94 348.6 220 80.0
MSTRG.16371 Avicennia marina HOM05D005342 ORTHO05D006925 7.9e-94 347.4 220 80.0
SGA_v2.0_scaffold298G47707 Striga asiatica HOM05D005342 ORTHO05D006925 3.0e-93 345.5 270 69.6
SalBow8G1060 Salvia bowleyana HOM05D005342 ORTHO05D006925 2.4e-90 335.9 229 74.7
Lj2A343T76 Lonicera japonica HOM05D005342 ORTHO05D006925 7.1e-87 324.3 228 72.4
Solyc02g081660.3 Solanum lycopersicum HOM05D005342 ORTHO05D006925 2.1e-86 322.8 220 74.1
Sopen02g026270 Solanum pennellii HOM05D005342 ORTHO05D006925 2.1e-86 322.8 220 74.1
Hund19384 Selenicereus undatus HOM05D005342 ORTHO05D006925 3.5e-86 322.0 220 74.1
PGSC0003DMG400017735 Solanum tuberosum HOM05D005342 ORTHO05D006925 1.0e-85 320.5 220 73.2
Nitab4.5_0013176g0020 Nicotiana tabacum HOM05D005342 ORTHO05D006925 1.8e-85 319.7 229 69.9
Dinv36886 Davidia involucrata HOM05D005342 ORTHO05D006925 3.0e-85 318.9 220 72.3
unitig_749.g13576 Utricularia gibba HOM05D005342 ORTHO05D006925 3.0e-85 318.9 220 72.3
GSVIVG01012146001 Vitis vinifera HOM05D005342 ORTHO05D006925 3.9e-85 318.5 229 70.7
ClCG01G025520 Citrullus lanatus HOM05D005342 ORTHO05D006925 5.1e-85 318.2 212 72.2
Dinv11757 Davidia involucrata HOM05D005342 ORTHO05D006925 6.7e-85 317.8 220 72.3
Peaxi162Scf00520g00219 Petunia axillaris HOM05D005342 ORTHO05D006925 6.7e-85 317.8 220 74.1
Thecc.02G004100 Theobroma cacao HOM05D005342 ORTHO05D006925 2.5e-84 315.8 221 71.0
CSS0011520 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 3.3e-84 315.5 220 71.4
CSS0036835 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 3.3e-84 315.5 220 71.4
arahy.Tifrunner.gnm1.ann1.T4IDLE Arachis hypogaea HOM05D005342 ORTHO05D006925 9.6e-84 313.9 213 72.8
Potri.001G160800 Populus trichocarpa HOM05D005342 ORTHO05D006925 9.6e-84 313.9 229 69.4
CAN.G809.68 Capsicum annuum HOM05D005342 ORTHO05D006925 1.3e-83 313.5 226 70.8
MELO3C007034.2 Cucumis melo HOM05D005342 ORTHO05D006925 3.7e-83 312.0 223 68.2
CsaV3_6G052760 Cucumis sativus L. HOM05D005342 ORTHO05D006925 3.7e-83 312.0 223 68.6
Glyma.07G173800 Glycine max HOM05D005342 ORTHO05D006925 6.2e-83 311.2 221 69.7
EL10Ac2g03680 Beta vulgaris HOM05D005342 ORTHO05D006925 8.1e-83 310.8 220 71.8
MD10G1227500 Malus domestica HOM05D005342 ORTHO05D006925 8.1e-83 310.8 228 70.2
AUR62038720 Chenopodium quinoa HOM05D005342 ORTHO05D006925 1.1e-82 310.5 220 69.5
TWI53G1312 Tripterygium wilfordii HOM05D005342 ORTHO05D006925 1.4e-82 310.1 220 70.0
Sed0018199 Sechium edule HOM05D005342 ORTHO05D006925 1.8e-82 309.7 223 69.1
MD05G1246900 Malus domestica HOM05D005342 ORTHO05D006925 2.4e-82 309.3 228 69.7
Manes.03G075200 Manihot esculenta HOM05D005342 ORTHO05D006925 2.4e-82 309.3 220 68.2
arahy.Tifrunner.gnm1.ann1.EGN9M7 Arachis hypogaea HOM05D005342 ORTHO05D006925 3.1e-82 308.9 221 69.2
Gorai.002G218700 Gossypium raimondii HOM05D005342 ORTHO05D006925 3.1e-82 308.9 221 68.8
Aa31LG9G16230 Aethionema arabicum HOM05D005342 ORTHO05D006925 4.0e-82 308.5 229 67.2
AUR62043831 Chenopodium quinoa HOM05D005342 ORTHO05D006925 4.0e-82 308.5 219 69.4
CiPaw.09G137700 Carya illinoinensis HOM05D005342 ORTHO05D006925 6.9e-82 307.8 223 69.5
Prupe.4G117500 Prunus persica HOM05D005342 ORTHO05D006925 6.9e-82 307.8 229 68.6
Phvul.003G015000 Phaseolus vulgaris HOM05D005342 ORTHO05D006925 9.0e-82 307.4 221 67.0
Cfa001127 Carpinus fangiana HOM05D005342 ORTHO05D006925 1.2e-81 307.0 223 68.6
Gohir.D01G176400 Gossypium hirsutum HOM05D005342 ORTHO05D006925 1.2e-81 307.0 221 68.3
Atru.chr10.349 Acer truncatum HOM05D005342 ORTHO05D006925 1.5e-81 306.6 221 66.5
Haze_05265 Corylus avellana HOM05D005342 ORTHO05D006925 1.5e-81 306.6 220 69.5
Atru.chr10.317 Acer truncatum HOM05D005342 ORTHO05D006925 2.0e-81 306.2 221 66.5
Psat6g050320 Pisum sativum HOM05D005342 ORTHO05D006925 2.0e-81 306.2 221 67.9
Lalb_Chr10g0095551 Lupinus albus HOM05D005342 ORTHO05D006925 2.6e-81 305.8 220 68.6
TPR.G34568 Trifolium pratense HOM05D005342 ORTHO05D006925 2.6e-81 305.8 221 67.9
RcHm_v2.0_Chr5g0021061 Rosa chinensis HOM05D005342 ORTHO05D006925 5.8e-81 304.7 223 67.3
Ca_26328_v3 Cicer arietinum L. HOM05D005342 ORTHO05D006925 7.6e-81 304.3 221 67.9
Eucgr.D00013 Eucalyptus grandis HOM05D005342 ORTHO05D006925 7.6e-81 304.3 220 68.6
THA.LOC104814325 Tarenaya hassleriana HOM05D005342 ORTHO05D006925 7.6e-81 304.3 229 66.8
Ciclev10015344m.g Citrus clementina HOM05D005342 ORTHO05D006925 1.0e-80 303.9 221 68.8
A09p35250 Brassica napus HOM05D005342 ORTHO05D006925 1.3e-80 303.5 229 66.8
BraA09t39052Z Brassica rapa HOM05D005342 ORTHO05D006925 1.3e-80 303.5 229 66.8
Gohir.A01G185820 Gossypium hirsutum HOM05D005342 ORTHO05D006925 1.3e-80 303.5 221 67.9
Lj2g0003117 Lotus japonicus HOM05D005342 ORTHO05D006925 2.2e-80 302.8 220 68.6
Medtr5g020440 Medicago truncatula HOM05D005342 ORTHO05D006925 2.2e-80 302.8 221 69.2
AL1G45370 Arabidopsis lyrata HOM05D005342 ORTHO05D006925 2.9e-80 302.4 223 67.7
AT1G30960 Arabidopsis thaliana HOM05D005342 ORTHO05D006925 3.8e-80 302.0 229 67.2
Medtr6g024095 Medicago truncatula HOM05D005342 ORTHO05D006925 3.8e-80 302.0 221 69.2
BcaB07g32756 Brassica carinata HOM05D005342 ORTHO05D006925 4.9e-80 301.6 229 66.4
BolC5t31751H Brassica oleracea HOM05D005342 ORTHO05D006925 4.9e-80 301.6 229 66.4
HanXRQChr05g0148741 Helianthus annuus HOM05D005342 ORTHO05D006925 4.9e-80 301.6 221 67.0
PGR004G0306 Punica granatum HOM05D005342 ORTHO05D006925 4.9e-80 301.6 220 66.8
DCAR_001275 Daucus carota HOM05D005342 ORTHO05D006925 6.5e-80 301.2 235 64.3
CARHR030500 Cardamine hirsuta HOM05D005342 ORTHO05D006925 8.4e-80 300.8 223 66.8
Carub.0001s2937 Capsella rubella HOM05D005342 ORTHO05D006925 1.1e-79 300.4 229 66.4
Thhalv10007654m.g Eutrema salsugineum HOM05D005342 ORTHO05D006925 1.4e-79 300.1 229 66.4
A07p09560 Brassica napus HOM05D005342 ORTHO05D006925 2.5e-79 299.3 229 65.9
C07p14720 Brassica napus HOM05D005342 ORTHO05D006925 2.5e-79 299.3 229 65.9
BolC7t41974H Brassica oleracea HOM05D005342 ORTHO05D006925 2.5e-79 299.3 229 65.9
BraA07t28750Z Brassica rapa HOM05D005342 ORTHO05D006925 2.5e-79 299.3 229 65.9
Ah.11g044120 Amaranthus hybridus HOM05D005342 ORTHO05D006925 3.2e-79 298.9 259 61.0
BcaC05g27129 Brassica carinata HOM05D005342 ORTHO05D006925 3.2e-79 298.9 229 65.9
C05p30140 Brassica napus HOM05D005342 ORTHO05D006925 3.2e-79 298.9 229 65.9
CANSAT35G0196 Cannabis sativa HOM05D005342 ORTHO05D006925 4.2e-79 298.5 221 68.3
FvH4_3g12950 Fragaria vesca HOM05D005342 ORTHO05D006925 4.2e-79 298.5 223 65.5
Sp1g26820 Schrenkiella parvula HOM05D005342 ORTHO05D006925 4.2e-79 298.5 229 65.9
Medtr1g033240 Medicago truncatula HOM05D005342 ORTHO05D006925 9.3e-79 297.4 220 68.6
Sabra01G0131500 Salix brachista HOM05D005342 ORTHO05D006925 1.2e-78 297.0 261 60.5
FAN16G1572 Fragaria x ananassa HOM05D005342 ORTHO05D006925 2.1e-78 296.2 230 64.8
QL11p012260 Quercus lobata HOM05D005342 ORTHO05D006925 3.5e-78 295.4 224 67.0
FAN11G0369 Fragaria x ananassa HOM05D005342 ORTHO05D006925 6.0e-78 294.7 234 64.5
TAR626G0514 Trochodendron aralioides HOM05D005342 ORTHO05D006925 7.9e-78 294.3 221 67.0
ECA246G2798 Erigeron canadensis HOM05D005342 ORTHO05D006925 1.3e-77 293.5 221 64.7
vmacro21284 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 1.8e-77 293.1 233 64.8
Zm00001eb171110 Zea mays HOM05D005342 ORTHO05D006925 5.1e-77 291.6 220 64.5
FAN21G1494 Fragaria x ananassa HOM05D005342 ORTHO05D006925 8.7e-77 290.8 239 61.5
Nn2g13664 Nelumbo nucifera HOM05D005342 ORTHO05D006925 7.4e-76 287.7 223 65.5
PSO017G0115 Papaver somniferum HOM05D005342 ORTHO05D006925 1.6e-75 286.6 224 64.3
PSO063G2198 Papaver somniferum HOM05D005342 ORTHO05D006925 1.6e-75 286.6 224 64.3
Lsat_1_v5_gn_6_95820 Lactuca sativa HOM05D005342 ORTHO05D006925 6.3e-75 284.6 230 62.2
Os08g0207600 Oryza sativa ssp. japonica HOM05D005342 ORTHO05D006925 6.3e-75 284.6 220 63.6
ATR0763G223 Amborella trichopoda HOM05D005342 ORTHO05D006925 1.8e-74 283.1 221 62.0
HPP92_001898 Vanilla planifolia HOM05D005342 ORTHO05D006925 1.5e-73 280.0 221 62.0
SHI17083 Sapria himalayana HOM05D005342 ORTHO05D006925 1.0e-72 277.3 220 60.9
Aqoxy1G01397 Aquilegia oxysepala HOM05D005342 ORTHO05D006925 1.3e-72 276.9 221 63.3
Sc17g0004080 Simmondsia chinensis HOM05D005342 ORTHO05D006925 4.8e-67 258.5 191 70.7
CDE03G0515 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 1.1e-66 257.3 221 61.1
Cpa.g.sc1627.2 Carica papaya HOM05D005342 ORTHO05D006925 5.9e-65 251.5 198 63.6
AUR62020653 Chenopodium quinoa HOM05D005342 ORTHO05D006925 8.5e-64 247.7 182 67.0
Duzib132G0347 Durio zibethinus HOM05D005342 ORTHO05D006925 1.1e-63 247.3 210 61.0
Rhsim03G0048600 Rhododendron simsii HOM05D005342 ORTHO05D006925 1.2e-62 243.8 205 61.0
vmacro07644 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 5.1e-61 238.4 234 55.6
FAN25G1408 Fragaria x ananassa HOM05D005342 ORTHO05D006925 5.7e-60 235.0 209 56.0
CDE06G1455 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 7.4e-60 234.6 191 60.7
Rhsim03G0048000 Rhododendron simsii HOM05D005342 ORTHO05D006925 1.1e-58 230.7 189 62.4
Cc09_g05200 Coffea canephora HOM05D005342 ORTHO05D006925 1.9e-55 219.9 133 78.9
Rhsim05G0150700 Rhododendron simsii HOM05D005342 ORTHO05D006925 1.6e-54 216.9 213 54.9
Nitab4.5_0006794g0030 Nicotiana tabacum HOM05D005342 ORTHO05D006925 2.7e-54 216.1 133 78.2
Actinidia37827 Actinidia chinensis HOM05D005342 ORTHO05D006925 6.7e-53 211.5 209 57.9
SMO347G0253 Selaginella moellendorffii HOM05D005342 ORTHO05D006925 1.8e-45 186.8 220 45.5
AagrBONN_evm.TU.Sc2ySwM_368.2515 Anthoceros agrestis HOM05D005342 ORTHO05D006925 1.7e-43 180.3 220 40.0
Pp3c8_14960 Physcomitrium patens HOM05D005342 ORTHO05D006925 4.8e-43 178.7 230 40.9
Mapoly0029s0109 Marchantia polymorpha HOM05D005342 ORTHO05D006925 3.1e-42 176.0 217 41.0
Prupe.4G117700 Prunus persica HOM05D005342 ORTHO05D006925 3.7e-35 152.5 130 62.3
Oeu016702.1 Olea europaea HOM05D005342 ORTHO05D006925 3.5e-33 146.0 82 81.7
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.6e-30 136.0 220 36.8
CSS0007057 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 6.1e-30 135.2 142 54.2
HPP92_001865 Vanilla planifolia HOM05D005342 ORTHO05D006925 6.8e-29 131.7 115 57.4
Atru.chr10.358 Acer truncatum HOM05D002757 ORTHO05D003252 1.7e-27 127.1 78 73.1
HPP92_001866 Vanilla planifolia HOM05D005342 ORTHO05D006925 2.8e-27 126.3 81 71.6
SEGI_08357 Sequoiadendron giganteum HOM05D005342 ORTHO05D006925 5.4e-26 122.1 79 70.9
Cc09_g05190 Coffea canephora HOM05D005342 ORTHO05D006925 7.8e-25 118.2 74 77.0
CSS0009297 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 6.8e-21 105.1 130 49.2
MCO16G643 Micromonas commoda HOM05D005342 ORTHO05D006925 2.2e-19 100.1 230 33.5
BcaB04g18195 Brassica carinata HOM05D005342 ORTHO05D006925 2.5e-15 86.7 97 45.4
Zm00001eb285440 Zea mays HOM05D000915 ORTHO05D001662 3.1e-13 79.7 52 71.2
MCO12G015 Micromonas commoda HOM05D006011 ORTHO05D007421 3.9e-08 62.8 218 28.4
Potri.007G021900 Populus trichocarpa HOM05D006011 ORTHO05D007421 5.0e-08 62.4 211 28.0
Lsat_1_v5_gn_2_77400 Lactuca sativa HOM05D006011 ORTHO05D007421 1.5e-07 60.8 194 26.8
CBR_g20394 Chara braunii HOM05D006011 ORTHO05D007421 1.9e-07 60.5 212 25.5
MD15G1257100 Malus domestica HOM05D006011 ORTHO05D007421 2.5e-07 60.1 211 28.0
RcHm_v2.0_Chr2g0100961 Rosa chinensis HOM05D006011 ORTHO05D007421 2.5e-07 60.1 211 28.4
FAN28G2106 Fragaria x ananassa HOM05D006011 ORTHO05D007421 3.3e-07 59.7 211 28.0
BraA08t33082Z Brassica rapa HOM05D005342 ORTHO05D006925 5.6e-07 58.9 88 44.3
FvH4_1g12880 Fragaria vesca HOM05D006011 ORTHO05D007421 5.6e-07 58.9 211 28.0
FAN23G2295 Fragaria x ananassa HOM05D006011 ORTHO05D007421 5.6e-07 58.9 211 28.0
BcaC06g34707 Brassica carinata HOM05D000001 ORTHO05D007421 9.5e-07 58.2 203 25.6
HPP92_023424 Vanilla planifolia HOM05D006011 ORTHO05D007421 9.5e-07 58.2 204 27.0
A07p17490 Brassica napus HOM05D006011 ORTHO05D007421 1.2e-06 57.8 211 25.6
BolC7t43065H Brassica oleracea HOM05D006011 ORTHO05D007421 1.2e-06 57.8 211 26.1
FAN19G0783 Fragaria x ananassa HOM05D006011 ORTHO05D007421 1.2e-06 57.8 211 28.0
HanXRQChr14g0440551 Helianthus annuus HOM05D006011 ORTHO05D007421 1.2e-06 57.8 211 26.5
MD02G1143800 Malus domestica HOM05D006011 ORTHO05D007421 1.2e-06 57.8 204 27.5
BcaNung05721 Brassica carinata HOM05D006011 ORTHO05D007421 1.6e-06 57.4 211 26.5
Haze_15063 Corylus avellana HOM05D006011 ORTHO05D007421 1.6e-06 57.4 203 27.1
THA.LOC104821298 Tarenaya hassleriana HOM05D006011 ORTHO05D007421 1.6e-06 57.4 211 26.5
BcaC04g23130 Brassica carinata HOM05D006011 ORTHO05D007421 2.1e-06 57.0 211 26.5
C07p25420 Brassica napus HOM05D006011 ORTHO05D007421 2.1e-06 57.0 211 25.6
C09p11830 Brassica napus HOM05D006011 ORTHO05D007421 2.1e-06 57.0 211 26.5
BolC9t54073H Brassica oleracea HOM05D006011 ORTHO05D007421 2.1e-06 57.0 211 26.5
Oeu012594.1 Olea europaea HOM05D006011 ORTHO05D007421 2.1e-06 57.0 211 25.6
Rhsim08G0119600 Rhododendron simsii HOM05D006011 ORTHO05D007421 2.1e-06 57.0 211 26.1
Aa31LG1G15000 Aethionema arabicum HOM05D006011 ORTHO05D007421 2.8e-06 56.6 212 24.5
Sabra07G0019000 Salix brachista HOM05D006011 ORTHO05D007421 2.8e-06 56.6 211 25.6
A09p09970 Brassica napus HOM05D006011 ORTHO05D007421 3.6e-06 56.2 211 26.1
BraA07t29469Z Brassica rapa HOM05D006011 ORTHO05D007421 3.6e-06 56.2 211 25.1
BraA09t36643Z Brassica rapa HOM05D006011 ORTHO05D007421 3.6e-06 56.2 211 26.1
FAN09G0512 Fragaria x ananassa HOM05D005342 ORTHO05D006925 4.7e-06 55.8 33 87.9
Migut.H02527 Erythranthe guttata HOM05D006011 ORTHO05D007421 6.2e-06 55.5 211 23.7
FAN17G0428 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.2e-06 55.5 30 90.0
Gohir.A10G096100 Gossypium hirsutum HOM05D006011 ORTHO05D007421 6.2e-06 55.5 211 25.1
Gorai.011G101000 Gossypium raimondii HOM05D006011 ORTHO05D007421 6.2e-06 55.5 211 25.1
Pp3c26_7390 Physcomitrium patens HOM05D006011 ORTHO05D007421 6.2e-06 55.5 214 25.2
Zm00001eb413810 Zea mays HOM05D005342 ORTHO05D006925 6.2e-06 55.5 31 83.9
Thhalv10004267m.g Eutrema salsugineum HOM05D006011 ORTHO05D007421 8.1e-06 55.1 211 26.1
PSO170G4293 Papaver somniferum HOM05D006011 ORTHO05D007421 8.1e-06 55.1 213 25.8
PSO170G4820 Papaver somniferum HOM05D006011 ORTHO05D007421 8.1e-06 55.1 213 25.8
PSO761G0239 Papaver somniferum HOM05D006011 ORTHO05D007421 8.1e-06 55.1 213 25.8
Sp2g30250 Schrenkiella parvula HOM05D006011 ORTHO05D007421 8.1e-06 55.1 211 26.1


User provided reference genes

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