Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 5.2e-232 807.4 412 100.0
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 5.4e-181 637.9 414 81.4
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 1.1e-136 490.7 408 62.7
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.2e-132 477.2 424 62.0
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 8.3e-113 411.4 405 54.3
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 3.3e-109 399.4 348 58.9
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 9.5e-109 397.9 409 53.1
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 6.2e-108 395.2 338 58.6
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 3.1e-107 392.9 407 51.4
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 3.1e-107 392.9 332 58.7
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 8.9e-107 391.3 404 53.2
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 9.8e-106 387.9 355 56.9
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.7e-105 387.1 345 57.4
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 3.7e-105 386.0 315 60.0
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 3.7e-105 386.0 349 57.0
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 1.9e-104 383.6 351 55.6
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 2.4e-104 383.3 322 58.7
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 4.1e-104 382.5 353 55.8
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 5.4e-104 382.1 317 59.6
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 2.0e-103 380.2 404 51.0
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 2.7e-103 379.8 314 59.6
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.7e-103 379.8 312 59.9
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 6.0e-103 378.6 318 59.4
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 7.8e-103 378.3 419 49.2
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 7.8e-103 378.3 303 60.7
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.7e-102 377.1 414 49.5
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.0e-102 376.3 404 49.0
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 8.6e-102 374.8 306 60.1
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.5e-101 374.0 406 49.0
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 2.5e-101 373.2 398 52.0
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 2.5e-101 373.2 319 56.7
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 4.3e-101 372.5 318 57.2
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 5.6e-101 372.1 395 49.4
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 5.6e-101 372.1 320 57.2
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 5.6e-101 372.1 322 57.1
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.3e-101 371.7 313 57.8
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 1.6e-100 370.5 400 52.2
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.1e-100 370.2 319 57.1
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 2.8e-100 369.8 347 54.5
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 4.7e-100 369.0 328 56.1
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 6.2e-100 368.6 325 56.3
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 8.1e-100 368.2 299 58.9
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 2.3e-99 366.7 328 54.9
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 2.3e-99 366.7 320 56.2
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 4.0e-99 365.9 307 56.4
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 5.2e-99 365.5 325 55.1
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.5e-98 364.0 347 55.6
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.5e-98 364.0 411 47.9
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.5e-98 364.0 312 58.3
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.0e-98 363.6 324 55.6
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 3.4e-98 362.8 376 50.5
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.5e-98 361.7 410 50.2
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 7.5e-98 361.7 360 51.7
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 9.8e-98 361.3 347 55.6
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 9.8e-98 361.3 360 51.7
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 6.4e-97 358.6 322 55.6
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 6.4e-97 358.6 348 52.9
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.9e-96 357.1 320 52.8
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 2.4e-96 356.7 298 59.7
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 5.4e-96 355.5 312 55.1
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 7.1e-96 355.1 350 50.9
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.2e-95 354.4 317 55.2
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.7e-95 353.2 360 50.8
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 1.0e-94 351.3 368 48.6
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.0e-94 351.3 296 55.4
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.3e-94 350.9 367 47.7
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 5.1e-94 349.0 397 47.1
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.5e-93 347.4 341 49.3
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.5e-93 347.4 298 54.4
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 3.3e-93 346.3 400 45.5
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 3.3e-93 346.3 400 45.8
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 4.3e-93 345.9 320 51.6
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 9.5e-93 344.7 323 51.7
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 9.5e-93 344.7 397 45.8
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.4e-91 340.9 308 54.5
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.8e-91 340.5 392 48.7
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 3.1e-91 339.7 322 51.2
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.1e-91 339.7 428 47.0
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.0e-91 339.3 397 44.8
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 5.2e-91 339.0 374 46.3
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 5.2e-91 339.0 320 51.2
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 5.2e-91 339.0 320 51.2
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 5.2e-91 339.0 320 51.2
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 5.2e-91 339.0 404 44.6
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 6.8e-91 338.6 313 51.8
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 3.4e-90 336.3 298 52.3
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 5.8e-90 335.5 367 48.2
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 5.8e-90 335.5 407 44.7
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 7.6e-90 335.1 367 48.0
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.7e-89 334.0 307 53.4
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.2e-89 333.6 403 46.4
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.4e-88 330.9 309 51.8
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 3.5e-87 326.2 318 49.4
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 2.3e-86 323.6 316 52.2
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.9e-85 320.5 290 57.6
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 9.6e-85 318.2 317 51.4
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.8e-83 313.9 330 50.9
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 5.8e-82 308.9 352 45.5
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 4.9e-81 305.8 320 48.8
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 7.1e-80 302.0 256 59.0
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.2e-79 301.2 260 59.6
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 3.9e-78 296.2 313 47.6
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.9e-77 293.9 404 44.8
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 9.9e-74 281.6 279 55.2
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 4.0e-67 259.6 231 54.5
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 4.5e-66 256.1 251 49.8
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 8.4e-65 251.9 339 40.1
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 1.5e-61 241.1 306 45.1
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 9.6e-61 238.4 230 50.9
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 8.1e-60 235.3 283 44.5
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 3.1e-59 233.4 199 56.8
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 4.0e-59 233.0 367 38.4
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 6.5e-57 225.7 193 54.9
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 7.2e-48 195.7 349 38.4
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 5.9e-42 176.0 265 38.5
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 3.0e-38 163.7 188 47.9
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 6.9e-35 152.5 320 28.1
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.0e-33 148.7 320 28.4
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 1.4e-32 144.8 123 54.5
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.6e-31 141.4 116 58.6
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 2.0e-29 134.4 180 40.6
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.3e-28 129.4 132 52.3
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 3.5e-26 123.6 149 39.6
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 2.9e-25 120.6 218 33.5
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 3.8e-25 120.2 172 41.3
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 4.7e-23 113.2 95 61.1
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 4.8e-20 103.2 287 24.7
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 3.1e-19 100.5 76 61.8
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.0e-17 95.5 108 48.1
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.3e-17 95.1 247 26.3
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 3.2e-16 90.5 111 42.3
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.0e-14 85.5 295 25.1
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.8e-14 84.7 87 49.4
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.8e-14 82.8 68 57.4
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.2e-13 82.0 87 46.0
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.0e-09 68.9 67 50.7
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.2e-08 62.8 66 50.0


User provided reference genes

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