Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 9.9e-157 557.0 334 100.0
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.5e-83 313.9 277 63.5
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 5.6e-83 312.0 315 57.8
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.8e-81 307.0 297 60.9
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 5.0e-76 288.9 286 58.4
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.6e-74 283.9 290 60.0
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.8e-73 280.4 192 72.9
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 8.3e-71 271.6 289 57.1
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.4e-70 270.0 287 56.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 6.0e-69 265.4 300 57.0
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 6.0e-69 265.4 299 56.2
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.0e-68 264.6 341 57.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.3e-68 263.5 288 55.2
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.9e-68 262.7 294 54.1
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 5.0e-68 262.3 293 54.3
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.9e-67 260.4 286 54.9
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 5.6e-67 258.8 296 54.1
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 9.5e-67 258.1 326 50.3
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 9.5e-67 258.1 326 50.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.8e-66 256.5 280 55.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 3.6e-66 256.1 295 52.5
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.3e-65 253.4 238 57.1
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.3e-65 253.4 307 52.4
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 3.1e-65 253.1 310 51.6
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 3.4e-64 249.6 296 52.7
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.4e-64 249.2 293 53.2
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.2e-63 246.9 293 54.6
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.1e-62 242.7 293 51.5
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 4.1e-62 242.7 290 53.4
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 5.4e-62 242.3 286 50.7
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 7.1e-62 241.9 309 50.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.1e-61 240.4 307 50.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.7e-61 240.0 290 52.4
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.3e-60 237.7 328 49.1
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.3e-60 237.7 306 50.3
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.3e-60 236.9 302 53.0
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.3e-60 236.9 299 52.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.3e-60 236.9 305 49.5
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.5e-59 234.2 314 50.3
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.3e-59 233.0 160 75.0
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 7.3e-59 231.9 281 51.6
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.6e-58 229.6 291 50.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 4.7e-58 229.2 292 50.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 4.7e-58 229.2 290 51.0
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 6.2e-58 228.8 294 50.7
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.4e-57 227.6 320 51.2
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.3e-57 226.9 291 49.5
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.5e-56 224.2 304 48.0
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.5e-56 224.2 287 49.5
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.0e-56 223.8 291 49.5
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.6e-56 223.4 291 50.9
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.4e-56 223.0 296 48.0
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.4e-56 223.0 289 50.2
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 4.4e-56 222.6 301 49.8
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 5.8e-56 222.2 290 47.6
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 7.6e-56 221.9 287 48.8
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 7.6e-56 221.9 289 49.5
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.6e-56 221.9 289 49.5
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.6e-56 221.9 289 49.8
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 9.9e-56 221.5 301 47.5
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.9e-56 221.5 289 49.8
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.3e-55 221.1 287 49.8
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.2e-55 220.3 290 48.6
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.2e-55 220.3 294 49.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.9e-55 219.9 298 47.7
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 3.8e-55 219.5 307 47.6
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 3.8e-55 219.5 303 49.2
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.8e-55 219.5 291 48.1
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 6.4e-55 218.8 301 48.5
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.4e-55 218.8 285 49.8
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.1e-54 218.0 286 48.6
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.1e-54 218.0 297 50.5
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.4e-54 217.6 301 48.2
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 2.4e-54 216.9 297 48.1
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.2e-54 216.5 299 48.5
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.2e-54 216.5 294 47.6
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 5.4e-54 215.7 289 48.4
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 7.1e-54 215.3 283 48.8
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.2e-53 214.5 303 47.9
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.6e-53 214.2 288 46.5
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 2.1e-53 213.8 295 47.8
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.1e-53 213.8 295 47.8
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 6.0e-53 212.2 261 50.2
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.0e-52 211.5 290 47.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.0e-52 211.5 290 47.2
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.0e-52 211.5 300 48.3
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.0e-52 211.5 288 45.8
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.0e-52 211.5 285 46.3
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.0e-52 211.5 300 48.0
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.3e-52 211.1 299 47.8
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.3e-52 211.1 291 47.8
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.3e-52 210.3 288 47.2
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 5.1e-52 209.1 297 48.1
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 6.6e-52 208.8 267 48.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.1e-51 208.0 291 49.1
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.1e-51 208.0 307 46.3
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.5e-51 207.6 300 46.0
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 2.5e-51 206.8 275 47.6
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.5e-51 206.8 288 47.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.3e-51 206.5 288 46.2
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 7.3e-51 205.3 308 46.4
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 9.6e-51 204.9 287 47.4
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 9.6e-51 204.9 278 48.2
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.2e-50 204.5 291 45.0
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.2e-50 204.5 289 47.1
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.2e-50 204.5 294 44.9
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.6e-50 203.0 179 60.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.6e-50 203.0 336 40.2
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 4.7e-50 202.6 289 46.4
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 4.7e-50 202.6 287 49.1
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.1e-49 201.4 299 45.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.8e-49 200.7 197 58.4
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.0e-49 199.5 294 46.3
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 5.2e-49 199.1 289 45.3
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 5.2e-49 199.1 289 45.7
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.2e-48 198.0 179 58.7
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 2.0e-48 197.2 314 44.9
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.0e-48 197.2 197 57.9
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-47 194.5 197 57.4
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.2e-47 193.7 256 49.2
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.2e-47 193.7 291 45.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 4.9e-47 192.6 286 47.6
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 4.9e-47 192.6 295 44.1
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.1e-46 191.4 294 44.9
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 5.4e-46 189.1 282 46.1
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.2e-45 188.0 304 42.4
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.6e-45 187.6 270 48.9
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.3e-44 184.5 171 59.1
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 2.5e-43 180.3 299 43.1
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.4e-41 174.5 292 43.5
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.4e-41 173.7 162 59.9
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.2e-40 171.4 137 65.0
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.3e-39 167.9 302 41.4
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.2e-38 162.9 278 47.1
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.1e-38 162.2 159 57.9
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 7.1e-38 162.2 287 41.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.6e-37 161.0 183 51.4
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.7e-37 160.2 279 36.9
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.8e-36 157.5 293 43.3
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.5e-35 153.7 287 40.1
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.1e-33 146.7 185 46.5
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.1e-33 146.7 248 44.4
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.6e-32 143.7 263 43.3
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 4.5e-32 142.9 130 57.7
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 7.6e-32 142.1 121 57.0
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.9e-31 140.2 236 42.4
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.1e-30 138.3 130 56.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.2e-29 134.8 168 47.0
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 2.5e-27 127.1 292 34.9
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.1e-21 107.5 274 33.9
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.3e-20 104.8 173 38.2
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 2.3e-20 104.0 75 68.0
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 2.5e-19 100.5 169 40.2
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 8.5e-15 85.5 160 44.4
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.9e-08 62.8 55 56.4
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.8e-07 60.1 146 41.1


User provided reference genes

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