Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 2.9e-152 542.0 289 100.0
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 6.5e-80 301.6 263 69.2
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 5.0e-56 222.2 159 73.0
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 1.2e-49 201.1 206 57.8
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.6e-49 200.7 209 55.0
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 3.5e-49 199.5 209 57.4
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 3.5e-49 199.5 198 56.1
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 3.5e-49 199.5 206 56.8
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 3.5e-49 199.5 203 56.2
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 3.5e-49 199.5 203 57.6
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 5.9e-49 198.7 196 57.7
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 1.0e-48 198.0 210 55.7
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 1.0e-48 198.0 202 55.4
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 1.3e-48 197.6 214 55.1
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 1.7e-48 197.2 204 56.4
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 1.7e-48 197.2 179 60.3
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 2.3e-48 196.8 199 54.3
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 2.9e-48 196.4 270 46.3
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 2.9e-48 196.4 179 59.8
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 2.9e-48 196.4 203 55.2
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 2.9e-48 196.4 180 62.8
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 5.0e-48 195.7 180 61.7
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 6.6e-48 195.3 213 54.0
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 8.6e-48 194.9 196 57.1
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 8.6e-48 194.9 201 54.7
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 8.6e-48 194.9 210 52.9
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 1.1e-47 194.5 179 59.2
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 1.1e-47 194.5 179 59.2
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 1.1e-47 194.5 179 58.1
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 1.5e-47 194.1 180 61.1
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 1.9e-47 193.7 206 55.3
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 2.5e-47 193.4 180 61.1
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 2.5e-47 193.4 203 54.2
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 3.3e-47 193.0 180 60.0
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 3.3e-47 193.0 213 53.1
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 7.2e-47 191.8 181 59.7
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 7.2e-47 191.8 180 60.6
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 9.5e-47 191.4 181 59.1
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 9.5e-47 191.4 180 60.0
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 9.5e-47 191.4 180 60.0
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.2e-46 191.0 199 56.3
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 2.1e-46 190.3 179 61.5
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 2.1e-46 190.3 179 59.2
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 2.8e-46 189.9 180 60.0
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 2.8e-46 189.9 180 59.4
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 2.8e-46 189.9 180 59.4
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 2.8e-46 189.9 182 60.4
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 2.8e-46 189.9 181 58.6
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 2.8e-46 189.9 202 55.4
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.6e-46 189.5 205 54.6
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 3.6e-46 189.5 179 59.8
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 6.1e-46 188.7 206 51.9
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 6.1e-46 188.7 206 52.9
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 6.1e-46 188.7 201 54.2
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 8.0e-46 188.3 182 58.8
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 8.0e-46 188.3 200 55.5
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 8.0e-46 188.3 205 53.7
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.0e-45 188.0 202 55.0
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 1.0e-45 188.0 179 58.7
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 1.4e-45 187.6 182 59.3
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 1.4e-45 187.6 208 52.4
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 2.3e-45 186.8 180 56.7
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 2.3e-45 186.8 212 52.8
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 2.3e-45 186.8 180 61.1
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.0e-45 186.4 202 54.5
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 3.0e-45 186.4 179 60.9
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 4.0e-45 186.0 179 58.7
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 5.2e-45 185.7 179 57.5
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 5.2e-45 185.7 180 57.2
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 6.8e-45 185.3 180 58.3
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 8.9e-45 184.9 206 53.4
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 8.9e-45 184.9 210 52.9
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 8.9e-45 184.9 210 52.9
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 1.2e-44 184.5 180 57.8
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 1.5e-44 184.1 180 58.3
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 1.5e-44 184.1 212 51.4
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.5e-44 184.1 180 56.1
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 4.4e-44 182.6 182 56.0
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 1.7e-43 180.6 179 56.4
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 1.7e-43 180.6 182 56.0
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 3.7e-43 179.5 179 55.9
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 3.7e-43 179.5 182 54.9
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 3.7e-43 179.5 182 54.9
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 3.7e-43 179.5 182 54.9
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 3.7e-43 179.5 182 54.9
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 3.7e-43 179.5 182 55.5
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 3.7e-43 179.5 179 57.5
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 8.3e-43 178.3 181 55.2
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 8.3e-43 178.3 180 56.1
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 8.3e-43 178.3 179 56.4
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.1e-42 177.9 200 52.5
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.8e-42 177.2 183 57.9
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 2.4e-42 176.8 179 54.7
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 3.2e-42 176.4 180 55.6
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 5.4e-42 175.6 179 54.7
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 7.0e-42 175.3 180 55.6
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 9.2e-42 174.9 180 53.9
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 9.2e-42 174.9 180 53.9
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 5.9e-41 172.2 215 49.8
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 3.9e-40 169.5 181 56.4
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 8.6e-40 168.3 182 53.8
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 9.8e-36 154.8 183 46.4
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 8.3e-35 151.8 171 55.6
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 2.3e-32 143.7 183 42.6
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 8.6e-32 141.7 214 39.3
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 4.3e-31 139.4 204 43.1
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.2e-30 137.9 183 41.5
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 2.6e-28 130.2 148 51.4
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.1e-26 124.8 98 70.4
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 1.4e-26 124.4 95 71.6
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 1.2e-25 121.3 106 63.2
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.2e-22 111.3 74 75.7
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.8e-21 107.5 73 74.0
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 7.6e-20 102.1 178 34.8
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 3.7e-19 99.8 75 68.0
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 1.4e-18 97.8 187 32.6
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 2.4e-18 97.1 58 77.6
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 4.3e-15 86.3 58 65.5
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 1.6e-09 67.8 179 27.4
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.7e-08 64.3 112 37.5
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 8.7e-08 62.0 63 52.4
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 9.6e-07 58.5 39 71.8
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 9.6e-07 58.5 49 61.2


User provided reference genes

Program Settings