Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.3e-213 746.1 380 100.0
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 8.6e-157 557.4 381 74.8
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 2.5e-156 555.8 391 73.4
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 4.0e-154 548.5 373 74.8
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 7.6e-153 544.3 372 74.2
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.2e-150 537.0 366 73.2
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 3.6e-147 525.4 372 70.7
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.4e-146 523.5 373 70.8
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 4.0e-146 521.9 366 71.0
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.4e-145 518.5 372 70.7
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.7e-144 516.5 375 70.7
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.9e-144 515.0 372 70.7
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.4e-143 513.5 371 69.5
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 4.2e-143 511.9 373 70.2
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 7.1e-143 511.1 366 71.3
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 3.5e-142 508.8 373 68.6
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.5e-142 508.8 373 68.6
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 4.6e-142 508.4 372 70.4
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 4.6e-142 508.4 371 69.8
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 6.0e-142 508.1 374 68.4
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.0e-141 507.3 371 69.5
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 2.3e-141 506.1 371 69.3
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 2.3e-141 506.1 373 67.6
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 5.1e-141 505.0 373 67.0
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 6.6e-141 504.6 366 70.2
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 6.6e-141 504.6 366 70.2
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.5e-140 502.7 382 66.2
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 3.3e-140 502.3 371 68.5
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 3.3e-140 502.3 371 68.5
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 5.6e-140 501.5 371 68.5
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 9.6e-140 500.7 371 69.0
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.6e-139 500.0 373 67.6
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 2.1e-139 499.6 371 69.3
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 6.2e-139 498.0 373 66.8
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 8.1e-139 497.7 364 68.4
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.1e-138 497.3 370 67.0
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 4.0e-138 495.4 370 66.5
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 4.0e-138 495.4 371 66.8
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 5.3e-138 495.0 374 66.8
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 3.4e-137 492.3 337 71.2
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 7.6e-137 491.1 372 66.4
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 7.6e-137 491.1 337 71.2
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.9e-136 488.4 359 69.9
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.9e-135 486.5 371 67.4
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 2.4e-135 486.1 397 64.0
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.4e-135 486.1 381 64.3
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.4e-135 486.1 366 68.0
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 4.2e-135 485.3 337 72.4
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.2e-134 483.8 365 66.8
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 1.2e-134 483.8 366 67.5
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.6e-134 483.4 335 72.5
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 3.5e-134 482.3 373 65.7
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 3.0e-133 479.2 374 66.6
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 5.1e-133 478.4 371 63.9
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 5.1e-133 478.4 371 64.4
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.5e-132 476.9 371 66.6
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.5e-132 476.1 335 69.6
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 9.6e-132 474.2 369 66.1
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 2.1e-131 473.0 357 65.5
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.1e-131 473.0 337 71.2
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 8.1e-131 471.1 371 66.0
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.2e-129 467.2 369 64.8
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.5e-129 466.8 367 64.9
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 3.4e-129 465.7 424 58.7
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 7.6e-129 464.5 366 64.2
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 2.1e-126 456.4 338 67.8
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 2.7e-126 456.1 368 63.9
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 3.9e-125 452.2 374 65.0
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.1e-124 450.7 334 65.6
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 6.2e-123 444.9 377 60.5
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 2.6e-121 439.5 369 60.7
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 2.2e-120 436.4 307 71.0
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.4e-119 433.7 370 61.4
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.5e-119 433.0 364 61.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 4.2e-119 432.2 344 64.5
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 4.6e-118 428.7 288 72.6
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.0e-117 427.6 371 60.6
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 2.3e-117 426.4 374 61.5
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 6.7e-117 424.9 445 55.1
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.1e-114 416.0 359 59.9
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 6.9e-114 414.8 352 61.9
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 4.2e-111 405.6 353 60.3
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.0e-109 401.0 366 58.2
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 5.7e-108 395.2 271 71.2
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.1e-106 389.0 369 58.3
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 5.9e-105 385.2 342 58.5
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 2.9e-104 382.9 380 56.1
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 3.9e-101 372.5 274 69.7
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.0e-100 370.2 368 54.6
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 4.4e-100 369.0 342 56.4
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 2.8e-99 366.3 307 61.6
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 3.7e-99 365.9 305 60.3
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 7.0e-98 361.7 275 66.9
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.0e-97 360.1 275 68.4
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 5.0e-96 355.5 275 67.6
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 4.2e-95 352.4 239 74.1
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.6e-94 350.5 275 66.2
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.7e-94 349.7 282 62.4
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 9.7e-92 341.3 270 66.7
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 2.2e-91 340.1 265 66.4
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.8e-90 337.0 318 55.3
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 3.8e-88 329.3 393 47.8
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.5e-87 327.4 270 63.0
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 8.8e-85 318.2 234 70.5
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 6.5e-80 302.0 366 47.0
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 8.3e-75 285.0 206 71.4
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.8e-74 283.9 348 46.3
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 4.1e-66 256.1 221 62.4
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.4e-58 230.3 450 35.6
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 6.8e-53 212.2 217 52.5
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 7.8e-49 198.7 388 34.3
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 5.1e-48 196.1 223 48.9
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.1e-47 194.9 157 64.3
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 2.6e-44 183.7 99 96.0
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.5e-39 167.2 149 59.7
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.4e-34 150.6 307 31.9
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.7e-33 147.1 157 51.0
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.5e-31 141.4 146 52.1
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.4e-28 130.2 96 61.5
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 4.4e-28 129.8 112 61.6
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 7.6e-28 129.0 118 51.7
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.9e-26 124.4 136 49.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 4.8e-22 109.8 75 72.0
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 3.1e-21 107.1 301 29.2
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 5.3e-21 106.3 73 71.2
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 9.0e-21 105.5 81 64.2
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.0e-20 104.4 91 58.2
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 5.7e-07 59.7 185 28.6
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 7.4e-07 59.3 103 35.0
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 8.2e-06 55.8 186 24.2


User provided reference genes

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