Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold174G39260 Striga asiatica HOM05D002203 ORTHO05D011354 4.3e-56 221.1 111 100.0
MSTRG.18958 Avicennia marina HOM05D001122 ORTHO05D001877 2.3e-09 65.9 59 55.9
Migut.J00063 Erythranthe guttata HOM05D001122 ORTHO05D001877 5.1e-09 64.7 61 59.0
MSTRG.5516 Avicennia marina HOM05D001122 ORTHO05D001877 1.9e-08 62.8 60 56.7
Rhsim05G0228900 Rhododendron simsii HOM05D001122 ORTHO05D001877 9.7e-08 60.5 58 48.3
Migut.D00299 Erythranthe guttata HOM05D002203 ORTHO05D002647 3.7e-07 58.5 39 74.4
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 4.8e-07 58.2 39 76.9
GSVIVG01011129001 Vitis vinifera HOM05D002203 ORTHO05D002647 4.8e-07 58.2 39 76.9
CAN.G232.4 Capsicum annuum HOM05D002203 ORTHO05D002647 6.3e-07 57.8 39 74.4
Nitab4.5_0000458g0070 Nicotiana tabacum HOM05D002203 ORTHO05D002647 6.3e-07 57.8 39 74.4
Oeu028070.1 Olea europaea HOM05D002203 ORTHO05D002647 6.3e-07 57.8 39 76.9
Sopen09g026940 Solanum pennellii HOM05D002203 ORTHO05D002647 6.3e-07 57.8 39 74.4
PGSC0003DMG400012880 Solanum tuberosum HOM05D002203 ORTHO05D002647 6.3e-07 57.8 39 74.4
TAR362G1000 Trochodendron aralioides HOM05D002203 ORTHO05D002647 6.3e-07 57.8 39 76.9
EL10Ac7g17234 Beta vulgaris HOM05D002203 ORTHO05D002647 8.2e-07 57.4 39 74.4
TWI74G1328 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 8.2e-07 57.4 58 50.0
Aa31LG5G24080 Aethionema arabicum HOM05D001122 ORTHO05D001877 1.1e-06 57.0 53 50.9
CAN.G1549.2 Capsicum annuum HOM05D002203 ORTHO05D002647 1.1e-06 57.0 39 71.8
AUR62044044 Chenopodium quinoa HOM05D002203 ORTHO05D002647 1.1e-06 57.0 39 71.8
Cc01_g19440 Coffea canephora HOM05D002203 ORTHO05D002647 1.1e-06 57.0 39 71.8
FAN17G0845 Fragaria x ananassa HOM05D002203 ORTHO05D002647 1.1e-06 57.0 48 64.6
Nitab4.5_0000759g0190 Nicotiana tabacum HOM05D002203 ORTHO05D002647 1.1e-06 57.0 39 71.8
Nitab4.5_0008797g0060 Nicotiana tabacum HOM05D002203 ORTHO05D002647 1.1e-06 57.0 39 71.8
PGSC0003DMG401020126 Solanum tuberosum HOM05D002203 ORTHO05D002647 1.1e-06 57.0 39 71.8
SGA_v2.0_scaffold80G25932 Striga asiatica HOM05D002203 ORTHO05D002647 1.1e-06 57.0 39 74.4
CSS0049394 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D002647 1.4e-06 56.6 39 74.4
Peaxi162Scf00641g00816 Petunia axillaris HOM05D002203 ORTHO05D002647 1.4e-06 56.6 39 71.8
Prupe.8G240700 Prunus persica HOM05D002203 ORTHO05D002647 1.4e-06 56.6 39 74.4
Rhsim13G0025200 Rhododendron simsii HOM05D002203 ORTHO05D002647 1.4e-06 56.6 39 74.4
TPR.G4407 Trifolium pratense HOM05D001122 ORTHO05D001877 1.4e-06 56.6 53 49.1
MSTRG.17443 Avicennia marina HOM05D002203 ORTHO05D002647 1.8e-06 56.2 38 76.3
CSS0028428 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D002647 1.8e-06 56.2 39 74.4
Dinv34756 Davidia involucrata HOM05D002203 ORTHO05D002647 1.8e-06 56.2 39 71.8
Nn1g02239 Nelumbo nucifera HOM05D002203 ORTHO05D002647 1.8e-06 56.2 39 74.4
PSO170G5776 Papaver somniferum HOM05D002203 ORTHO05D002647 1.8e-06 56.2 39 74.4
PSO302G0024 Papaver somniferum HOM05D002203 ORTHO05D002647 1.8e-06 56.2 39 74.4
SGA_v2.0_scaffold81G25999 Striga asiatica HOM05D002203 ORTHO05D002647 1.8e-06 56.2 60 56.7
AUR62040485 Chenopodium quinoa HOM05D002203 ORTHO05D002647 2.4e-06 55.8 54 57.4
vmacro20355 Vaccinium macrocarpon HOM05D001122 ORTHO05D001877 2.4e-06 55.8 59 47.5
ECA248G1560 Erigeron canadensis HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 71.8
FvH4_4g15040 Fragaria vesca HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
FAN07G1362 Fragaria x ananassa HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
FAN12G3945 Fragaria x ananassa HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
FAN22G0461 Fragaria x ananassa HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
Glyma.19G156400 Glycine max HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 71.8
Hma1.2p1_0257F.1_g103380 Hydrangea macrophylla HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 71.8
Oeu041702.3 Olea europaea HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
Phvul.002G047400 Phaseolus vulgaris HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
RcHm_v2.0_Chr4g0416821 Rosa chinensis HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
Hund18000 Selenicereus undatus HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 71.8
TWI73G0791 Tripterygium wilfordii HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 69.2
VMungo1215G1236 Vigna mungo HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
GSVIVG01017925001 Vitis vinifera HOM05D002203 ORTHO05D002647 3.1e-06 55.5 39 74.4
Ah.13g073940 Amaranthus hybridus HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 74.4
CSS0019077 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 74.4
CSS0030369 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 4.1e-06 55.1 35 71.4
CiPaw.01G163500 Carya illinoinensis HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 71.8
Ca_24382_v3 Cicer arietinum L. HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 74.4
COL.COLO4_06198 Corchorus olitorius HOM05D002203 ORTHO05D002647 4.1e-06 55.1 38 73.7
Glyma.01G239200 Glycine max HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 74.4
Glyma.11G004300 Glycine max HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 74.4
HanXRQChr01g0003111 Helianthus annuus HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 71.8
Lsat_1_v5_gn_5_188180 Lactuca sativa HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 71.8
MD13G1188000 Malus domestica HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 74.4
Manes.03G181400 Manihot esculenta HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 71.8
Manes.15G026400 Manihot esculenta HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 71.8
Prupe.1G155300 Prunus persica HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 74.4
QL06p003393 Quercus lobata HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 71.8
Sed0017737 Sechium edule HOM05D002203 ORTHO05D002647 4.1e-06 55.1 39 69.2
Atru.chr4.2512 Acer truncatum HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Ah.15g091930 Amaranthus hybridus HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Aqoxy2G03344 Aquilegia oxysepala HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
EL10As3g23353 Beta vulgaris HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 74.4
Cfa015615 Carpinus fangiana HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
CiPaw.02G095100 Carya illinoinensis HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 69.2
AUR62038091 Chenopodium quinoa HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 74.4
Ciclev10004440m.g Citrus clementina HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Haze_00928 Corylus avellana HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
MELO3C006547.2 Cucumis melo HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 69.2
CsaV3_3G013510 Cucumis sativus L. HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 69.2
Dinv38423 Davidia involucrata HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Duzib151G0334 Durio zibethinus HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Duzib212G0654 Durio zibethinus HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Gohir.A09G214100 Gossypium hirsutum HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Gohir.D09G216600 Gossypium hirsutum HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Gorai.006G237100 Gossypium raimondii HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
PGR004G2428 Punica granatum HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Sed0023903 Sechium edule HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 69.2
Thecc.04G227100 Theobroma cacao HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
vmacro02574 Vaccinium macrocarpon HOM05D002203 ORTHO05D002647 5.3e-06 54.7 39 71.8
Actinidia11525 Actinidia chinensis HOM05D001122 ORTHO05D001877 6.9e-06 54.3 56 50.0
ATR0626G299 Amborella trichopoda HOM05D002203 ORTHO05D002647 6.9e-06 54.3 38 73.7
arahy.Tifrunner.gnm1.ann1.C0GFHN Arachis hypogaea HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 71.8
CANSAT25G2924 Cannabis sativa HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 66.7
Cfa006144 Carpinus fangiana HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 66.7
CDE05G1137 Ceratophyllum demersum HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 69.2
CDE11G0876 Ceratophyllum demersum HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 69.2
Ciclev10019087m.g Citrus clementina HOM05D002203 ORTHO05D002647 6.9e-06 54.3 41 68.3
Cc06_g00550 Coffea canephora HOM05D001122 ORTHO05D001877 6.9e-06 54.3 34 67.6
Dinv44507 Davidia involucrata HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 71.8
Duzib052G0929 Durio zibethinus HOM05D002203 ORTHO05D002647 6.9e-06 54.3 38 73.7
Glyma.03G154000 Glycine max HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 69.2
MD16G1188600 Malus domestica HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 71.8
Nn4g26258 Nelumbo nucifera HOM05D002203 ORTHO05D002647 6.9e-06 54.3 38 73.7
Prupe.6G289900 Prunus persica HOM05D001122 ORTHO05D001877 6.9e-06 54.3 36 61.1
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 6.9e-06 54.3 43 55.8
Sc13g0004220 Simmondsia chinensis HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 71.8
PGSC0003DMG402020126 Solanum tuberosum HOM05D002203 ORTHO05D002647 6.9e-06 54.3 42 61.9
SGA_v2.0_scaffold86G26913 Striga asiatica HOM05D000591 ORTHO05D011354 6.9e-06 54.3 71 49.3
THA.LOC104818780 Tarenaya hassleriana HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 71.8
TWI09G1215 Tripterygium wilfordii HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 69.2
TAR633G0927 Trochodendron aralioides HOM05D002203 ORTHO05D002647 6.9e-06 54.3 39 71.8
CiPaw.07G092100 Carya illinoinensis HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 66.7
ClCG05G005280 Citrullus lanatus HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 69.2
Duzib138G0917 Durio zibethinus HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 66.7
Migut.N02054 Erythranthe guttata HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 71.8
Gohir.A02G004900 Gossypium hirsutum HOM05D001122 ORTHO05D001877 9.1e-06 53.9 39 61.5
Gohir.A12G005100 Gossypium hirsutum HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 69.2
Gohir.D12G004600 Gossypium hirsutum HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 69.2
Gorai.008G004500 Gossypium raimondii HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 69.2
Lj5g0014423 Lotus japonicus HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 71.8
Potri.016G133300 Populus trichocarpa HOM05D001122 ORTHO05D001877 9.1e-06 53.9 37 59.5
QL12p021752 Quercus lobata HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 69.2
Thecc.01G278800 Theobroma cacao HOM05D002203 ORTHO05D002647 9.1e-06 53.9 39 66.7
TWI77G0311 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 9.1e-06 53.9 43 58.1


User provided reference genes

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