Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 0.0e+00 1246.9 661 100.0
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.5e-84 318.2 476 50.2
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.4e-69 268.5 463 40.6
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.1e-66 258.8 454 43.6
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 8.5e-59 232.6 466 41.4
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.4e-53 214.5 471 36.7
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.5e-52 211.8 460 39.6
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.6e-49 201.8 442 36.4
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 6.1e-49 199.9 454 35.7
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.8e-45 188.3 458 36.0
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 9.1e-45 186.0 387 38.2
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.6e-44 185.3 425 33.6
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.0e-44 184.9 405 36.3
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.9e-43 181.0 457 36.8
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 6.1e-41 173.3 455 34.9
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 8.0e-41 172.9 454 34.4
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 8.0e-41 172.9 468 34.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 4.0e-40 170.6 477 35.4
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.2e-40 170.2 452 35.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 6.7e-40 169.9 470 36.8
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.5e-39 168.7 465 34.4
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.5e-39 168.7 465 34.4
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 5.7e-39 166.8 447 33.3
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 5.7e-39 166.8 500 32.2
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 9.7e-39 166.0 459 35.7
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.8e-37 161.8 455 35.4
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.8e-37 161.8 461 34.3
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.0e-37 159.8 489 33.1
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.1e-37 159.5 492 32.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.2e-36 159.1 465 32.0
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.0e-36 158.3 471 32.5
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.5e-36 157.5 478 33.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 5.9e-36 156.8 475 34.3
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 5.9e-36 156.8 447 33.3
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.5e-34 152.1 452 32.7
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.5e-34 150.2 442 37.1
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 7.2e-34 149.8 470 33.2
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 2.7e-33 147.9 462 34.0
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 2.7e-33 147.9 462 34.0
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.6e-33 147.5 463 34.3
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 2.3e-32 144.8 401 32.7
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.7e-31 140.2 447 32.4
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.2e-30 138.3 467 34.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 6.3e-30 136.7 459 33.3
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-29 136.0 395 35.4
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-29 136.0 395 35.4
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.4e-29 135.6 475 31.6
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.8e-29 135.2 399 32.6
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.1e-29 134.4 428 30.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.1e-29 134.4 393 36.1
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.1e-29 134.0 405 31.1
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 7.0e-29 133.3 467 34.9
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.6e-28 132.1 460 31.7
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.6e-28 132.1 451 31.9
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 5.9e-28 130.2 469 31.6
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 7.7e-28 129.8 446 34.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 7.7e-28 129.8 498 28.7
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.7e-27 128.6 485 29.7
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.7e-27 128.6 569 29.2
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.9e-27 127.9 569 29.2
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 6.5e-27 126.7 433 35.6
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 3.2e-26 124.4 409 30.6
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 4.2e-26 124.0 497 28.6
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 9.5e-26 122.9 476 29.8
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.5e-26 122.9 439 33.0
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 2.8e-25 121.3 483 29.8
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.8e-25 121.3 519 29.5
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 3.6e-25 120.9 398 32.4
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 3.6e-25 120.9 434 32.3
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 4.7e-25 120.6 560 27.9
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.7e-25 120.6 432 36.1
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 8.0e-25 119.8 412 30.8
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 8.0e-25 119.8 415 31.6
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.3e-24 118.2 371 35.0
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.0e-24 117.9 238 38.2
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.5e-23 115.5 460 33.3
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.6e-23 114.8 465 33.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.6e-23 114.8 526 29.3
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 9.8e-23 112.8 470 29.6
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.2e-22 111.7 282 33.3
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.8e-22 111.3 485 30.9
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 3.7e-22 110.9 481 30.8
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 4.9e-22 110.5 471 30.6
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 2.4e-21 108.2 462 29.4
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 3.1e-21 107.8 327 35.5
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 5.4e-21 107.1 489 27.8
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.6e-20 105.5 532 26.1
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 5.9e-20 103.6 533 25.9
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.5e-18 99.0 449 28.7
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 4.3e-18 97.4 453 27.8
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.3e-18 96.7 327 36.4
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 9.5e-18 96.3 455 29.7
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 9.5e-18 96.3 538 26.4
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.2e-17 95.9 530 27.4
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-17 95.9 470 26.4
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.1e-17 95.1 441 26.1
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 6.1e-17 93.6 289 34.6
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 8.0e-17 93.2 539 30.2
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.8e-16 92.0 430 34.2
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.8e-16 92.0 286 35.0
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 8.9e-16 89.7 490 25.9
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-15 89.4 499 28.5
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.6e-15 88.2 459 27.9
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 7.5e-15 86.7 507 29.4
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 7.5e-15 86.7 473 28.3
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 7.5e-15 86.7 486 28.2
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.3e-14 85.9 579 25.4
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.2e-14 85.1 511 28.2
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.2e-14 85.1 60 66.7
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.9e-14 84.7 586 25.8
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 6.4e-14 83.6 535 28.0
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 1.4e-13 82.4 227 31.7
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 2.4e-13 81.6 496 28.0
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.4e-13 81.6 537 27.9
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.6e-12 77.4 122 43.4
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.0e-11 76.3 525 25.7
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 3.0e-11 74.7 517 27.3
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.9e-11 74.3 488 28.5
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 5.0e-11 73.9 528 27.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 5.0e-11 73.9 404 27.5
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.1e-10 72.8 76 61.8
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.5e-10 71.6 114 45.6
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 4.3e-10 70.9 80 50.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.6e-10 70.5 76 60.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.2e-09 69.3 484 29.3
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.6e-09 68.9 225 30.7
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.1e-09 68.6 492 27.0
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 6.2e-09 67.0 515 26.4
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 4.0e-08 64.3 491 27.5
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 5.2e-08 63.9 538 25.1
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 5.2e-08 63.9 103 42.7
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 6.8e-08 63.5 537 25.0
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 8.9e-08 63.2 412 25.2
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 8.9e-08 63.2 491 27.3
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 3.4e-07 61.2 438 24.7
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 4.4e-07 60.8 421 24.2
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 5.8e-07 60.5 66 48.5
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 9.8e-07 59.7 494 26.7
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.2e-06 58.5 510 23.1
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.9e-06 58.2 537 25.7
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.7e-06 57.8 501 26.9
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 8.3e-06 56.6 551 25.8


User provided reference genes

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