Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold173G39202 Striga asiatica HOM05D001170 ORTHO05D002759 1.3e-72 276.2 133 100.0
SGA_v2.0_scaffold423G51442 Striga asiatica HOM05D005263 ORTHO05D006891 4.2e-18 95.1 47 93.6
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.2e-17 93.6 89 58.4
FvH4_6g00720 Fragaria vesca HOM05D001170 ORTHO05D002759 2.8e-17 92.4 79 63.3
FAN02G4130 Fragaria x ananassa HOM05D007619 ORTHO05D009522 2.8e-17 92.4 79 63.3
MD12G1258800 Malus domestica HOM05D001170 ORTHO05D002759 4.7e-17 91.7 143 44.1
TWI23G0202 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 4.7e-17 91.7 81 58.0
Migut.F00004 Erythranthe guttata HOM05D001170 ORTHO05D002759 1.4e-16 90.1 154 42.2
Prupe.6G359300 Prunus persica HOM05D001170 ORTHO05D002759 1.4e-16 90.1 79 62.0
Hma1.2p1_0421F.1_g149800 Hydrangea macrophylla HOM05D001170 ORTHO05D002759 1.8e-16 89.7 79 60.8
Nn3g16178 Nelumbo nucifera HOM05D001170 ORTHO05D002759 1.8e-16 89.7 79 59.5
Actinidia19534 Actinidia chinensis HOM05D001170 ORTHO05D002759 3.0e-16 89.0 123 39.8
Ah.03g136480 Amaranthus hybridus HOM05D001170 ORTHO05D002759 3.0e-16 89.0 88 54.5
arahy.Tifrunner.gnm1.ann1.25IQBC Arachis hypogaea HOM05D001170 ORTHO05D002759 3.0e-16 89.0 86 55.8
arahy.Tifrunner.gnm1.ann1.BU1MR9 Arachis hypogaea HOM05D001170 ORTHO05D002759 3.0e-16 89.0 86 55.8
MD04G1241900 Malus domestica HOM05D001170 ORTHO05D002759 4.0e-16 88.6 79 59.5
RcHm_v2.0_Chr3g0448191 Rosa chinensis HOM05D001170 ORTHO05D002759 4.0e-16 88.6 79 60.8
Sc07g0003420 Simmondsia chinensis HOM05D001170 ORTHO05D002759 5.2e-16 88.2 79 59.5
MBI11_g22250_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D002759 6.8e-16 87.8 79 58.2
MBI11_g35129_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D002759 6.8e-16 87.8 79 58.2
SalBow4G1428 Salvia bowleyana HOM05D001170 ORTHO05D002759 6.8e-16 87.8 79 59.5
ClCG11G010980 Citrullus lanatus HOM05D001170 ORTHO05D002759 8.9e-16 87.4 79 59.5
Lalb_Chr03g0038351 Lupinus albus HOM05D001170 ORTHO05D002759 8.9e-16 87.4 84 57.1
Lj1g0025103 Lotus japonicus HOM05D001170 ORTHO05D002759 1.2e-15 87.0 137 39.4
TAR622G0119 Trochodendron aralioides HOM05D001170 ORTHO05D002759 1.2e-15 87.0 79 58.2
CDE09G0376 Ceratophyllum demersum HOM05D001170 ORTHO05D002759 1.5e-15 86.7 79 58.2
HanXRQChr14g0451571 Helianthus annuus HOM05D001170 ORTHO05D002759 1.5e-15 86.7 79 55.7
vmacro22107 Vaccinium macrocarpon HOM05D001170 ORTHO05D002759 1.5e-15 86.7 79 55.7
ATR0582G248 Amborella trichopoda HOM05D001170 ORTHO05D002759 2.0e-15 86.3 103 50.5
CiPaw.08G116300 Carya illinoinensis HOM05D001170 ORTHO05D002759 2.0e-15 86.3 79 58.2
AUR62003247 Chenopodium quinoa HOM05D001170 ORTHO05D002759 2.0e-15 86.3 79 57.0
AUR62027223 Chenopodium quinoa HOM05D001170 ORTHO05D002759 2.0e-15 86.3 79 58.2
Ciclev10016894m.g Citrus clementina HOM05D001170 ORTHO05D002759 2.0e-15 86.3 127 41.7
PGR142G0333 Punica granatum HOM05D001170 ORTHO05D002759 2.0e-15 86.3 80 58.8
Potri.014G141200 Populus trichocarpa HOM05D001170 ORTHO05D002759 2.6e-15 85.9 79 57.0
CSS0032266 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 4.4e-15 85.1 79 57.0
CsaV3_2G009510 Cucumis sativus L. HOM05D001170 ORTHO05D002759 4.4e-15 85.1 78 57.7
Dinv33255 Davidia involucrata HOM05D001170 ORTHO05D002759 4.4e-15 85.1 79 57.0
Eucgr.I01560 Eucalyptus grandis HOM05D001170 ORTHO05D002759 5.7e-15 84.7 81 55.6
vmacro22927 Vaccinium macrocarpon HOM05D001170 ORTHO05D002759 5.7e-15 84.7 78 55.1
Sabra14G0106500 Salix brachista HOM05D001170 ORTHO05D002759 7.5e-15 84.3 79 55.7
unitig_8.g3614 Utricularia gibba HOM05D005494 ORTHO05D006689 7.5e-15 84.3 79 54.4
CANSAT54G1807 Cannabis sativa HOM05D001170 ORTHO05D002759 9.8e-15 84.0 79 55.7
MELO3C008750.2 Cucumis melo HOM05D001170 ORTHO05D002759 9.8e-15 84.0 78 56.4
Lsat_1_v5_gn_2_95140 Lactuca sativa HOM05D001170 ORTHO05D002759 9.8e-15 84.0 79 55.7
BraA09t40241Z Brassica rapa HOM05D001170 ORTHO05D002759 1.3e-14 83.6 89 48.3
CSS0009163 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.3e-14 83.6 79 55.7
Medtr7g079520 Medicago truncatula HOM05D001170 ORTHO05D002759 1.3e-14 83.6 79 54.4
Phvul.008G055800 Phaseolus vulgaris HOM05D001170 ORTHO05D002759 1.3e-14 83.6 81 54.3
Psat3g104200 Pisum sativum HOM05D001170 ORTHO05D002759 1.3e-14 83.6 91 47.3
Haze_04529 Corylus avellana HOM05D001170 ORTHO05D002759 1.7e-14 83.2 79 55.7
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 1.7e-14 83.2 78 53.8
GSVIVG01032936001 Vitis vinifera HOM05D001170 ORTHO05D002759 1.7e-14 83.2 79 55.7
MSTRG.3033 Avicennia marina HOM05D001170 ORTHO05D002759 2.2e-14 82.8 79 55.7
Aqoxy5G02903 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 2.8e-14 82.4 79 57.0
Cfa006281 Carpinus fangiana HOM05D001170 ORTHO05D002759 3.7e-14 82.0 79 54.4
Cc07_g01480 Coffea canephora HOM05D001170 ORTHO05D002759 3.7e-14 82.0 79 54.4
ECA238G2587 Erigeron canadensis HOM05D001170 ORTHO05D002759 3.7e-14 82.0 79 51.9
Glyma.09G252200 Glycine max HOM05D001170 ORTHO05D002759 3.7e-14 82.0 84 51.2
Atru.chr6.2748 Acer truncatum HOM05D001170 ORTHO05D002759 4.9e-14 81.6 81 54.3
Glyma.18G240400 Glycine max HOM05D001170 ORTHO05D002759 4.9e-14 81.6 79 53.2
Nitab4.5_0011381g0010 Nicotiana tabacum HOM05D001170 ORTHO05D002759 4.9e-14 81.6 79 57.0
Nitab4.5_0011717g0010 Nicotiana tabacum HOM05D001170 ORTHO05D002759 4.9e-14 81.6 79 57.0
Gohir.D11G019900 Gossypium hirsutum HOM05D001170 ORTHO05D002759 6.3e-14 81.3 79 54.4
Gorai.007G021200 Gossypium raimondii HOM05D001170 ORTHO05D002759 6.3e-14 81.3 79 54.4
Manes.04G095400 Manihot esculenta HOM05D001170 ORTHO05D002759 6.3e-14 81.3 79 54.4
Sed0007820 Sechium edule HOM05D001170 ORTHO05D002759 6.3e-14 81.3 106 46.2
Solyc02g082200.4 Solanum lycopersicum HOM05D001170 ORTHO05D002759 6.3e-14 81.3 79 55.7
Sopen02g026860 Solanum pennellii HOM05D001170 ORTHO05D002759 6.3e-14 81.3 79 55.7
PGSC0003DMG400013635 Solanum tuberosum HOM05D001170 ORTHO05D002759 6.3e-14 81.3 79 55.7
A09p47840 Brassica napus HOM05D001170 ORTHO05D002759 1.1e-13 80.5 79 51.9
BolC6t37427H Brassica oleracea HOM05D001170 ORTHO05D002759 1.1e-13 80.5 81 50.6
CAN.G809.5 Capsicum annuum HOM05D001170 ORTHO05D002759 1.1e-13 80.5 79 57.0
THA.LOC104824236 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 1.1e-13 80.5 156 35.9
COL.COLO4_06601 Corchorus olitorius HOM05D001170 ORTHO05D002759 1.4e-13 80.1 81 53.1
Duzib128G0294 Durio zibethinus HOM05D001170 ORTHO05D002759 1.4e-13 80.1 79 53.2
Gohir.A11G020200 Gossypium hirsutum HOM05D001170 ORTHO05D002759 1.4e-13 80.1 79 53.2
Sp5g07530 Schrenkiella parvula HOM05D001170 ORTHO05D002759 1.4e-13 80.1 80 52.5
Aa31sc43G70 Aethionema arabicum HOM05D001170 ORTHO05D002759 1.8e-13 79.7 80 52.5
CARHR164890 Cardamine hirsuta HOM05D001170 ORTHO05D002759 1.8e-13 79.7 80 52.5
PSO017G6205 Papaver somniferum HOM05D001170 ORTHO05D002759 1.8e-13 79.7 79 54.4
PSO478G4380 Papaver somniferum HOM05D001170 ORTHO05D002759 1.8e-13 79.7 79 54.4
BcaB01g00148 Brassica carinata HOM05D001170 ORTHO05D002759 2.4e-13 79.3 79 50.6
Carub.0005s2151 Capsella rubella HOM05D001170 ORTHO05D002759 2.4e-13 79.3 80 51.2
AL5G36010 Arabidopsis lyrata HOM05D001170 ORTHO05D002759 3.2e-13 79.0 80 51.2
AT3G54900 Arabidopsis thaliana HOM05D001170 ORTHO05D002759 3.2e-13 79.0 80 51.2
Os03g0851200 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 4.1e-13 78.6 78 51.3
Thhalv10010760m.g Eutrema salsugineum HOM05D001170 ORTHO05D002759 5.4e-13 78.2 80 50.0
THA.LOC104809971 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 5.4e-13 78.2 81 49.4
Thecc.09G244600 Theobroma cacao HOM05D001170 ORTHO05D002759 5.4e-13 78.2 79 51.9
BcaB02g07714 Brassica carinata HOM05D001170 ORTHO05D002759 7.0e-13 77.8 78 51.3
BcaC08g44706 Brassica carinata HOM05D001170 ORTHO05D002759 7.0e-13 77.8 80 50.0
C06p22400 Brassica napus HOM05D001170 ORTHO05D002759 7.0e-13 77.8 80 50.0
EL10Ac6g13924 Beta vulgaris HOM05D001170 ORTHO05D002759 1.2e-12 77.0 40 87.5
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.2e-12 77.0 78 57.7
BcaC07g39768 Brassica carinata HOM05D001170 ORTHO05D002759 1.6e-12 76.6 78 50.0
A07p22310 Brassica napus HOM05D001170 ORTHO05D002759 1.6e-12 76.6 78 50.0
BraA07t29909Z Brassica rapa HOM05D001170 ORTHO05D002759 1.6e-12 76.6 78 50.0
Hma1.2p1_0421F.1_g149810 Hydrangea macrophylla HOM05D001170 ORTHO05D002759 2.0e-12 76.3 40 85.0
DCAR_000959 Daucus carota HOM05D001170 ORTHO05D002759 2.7e-12 75.9 43 81.4
C08p30090 Brassica napus HOM05D001170 ORTHO05D002759 3.5e-12 75.5 78 48.7
Zm00001eb210730 Zea mays HOM05D001170 ORTHO05D002759 3.5e-12 75.5 79 49.4
Zm00001eb064590 Zea mays HOM05D001170 ORTHO05D002759 4.5e-12 75.1 79 48.1
Lj7P620T26 Lonicera japonica HOM05D001170 ORTHO05D002759 1.7e-11 73.2 40 82.5
Pp3c8_18520 Physcomitrium patens HOM05D001170 ORTHO05D002759 2.9e-11 72.4 79 45.6
CBR_g41800 Chara braunii HOM05D001170 ORTHO05D002759 3.9e-11 72.0 88 45.5
Peaxi162Scf00404g00097 Petunia axillaris HOM05D001170 ORTHO05D002759 6.6e-11 71.2 76 53.9
Peaxi162Scf00331g00001 Petunia axillaris HOM05D001170 ORTHO05D002759 8.6e-11 70.9 40 77.5
SMO141G0103 Selaginella moellendorffii HOM05D001170 ORTHO05D002759 1.9e-10 69.7 81 44.4
Pp3c24_14100 Physcomitrium patens HOM05D001170 ORTHO05D002759 2.5e-10 69.3 79 43.0
BolC8t50618H Brassica oleracea HOM05D001170 ORTHO05D002759 3.3e-10 68.9 39 74.4
SEGI_39266 Sequoiadendron giganteum HOM05D001170 ORTHO05D002759 4.3e-10 68.6 40 72.5
AagrBONN_evm.TU.Sc2ySwM_228.376 Anthoceros agrestis HOM05D001170 ORTHO05D002759 7.3e-10 67.8 79 44.3
Mapoly0006s0309 Marchantia polymorpha HOM05D001170 ORTHO05D002759 6.1e-09 64.7 79 40.5
Cre07.g325743 Chlamydomonas reinhardtii HOM05D001170 ORTHO05D002759 2.0e-07 59.7 78 34.6
MCO10G282 Micromonas commoda HOM05D001170 ORTHO05D002759 3.4e-07 58.9 78 37.2
Cre04.g232602 Chlamydomonas reinhardtii HOM05D001170 ORTHO05D006602 4.4e-07 58.5 45 55.6
AL3G40870 Arabidopsis lyrata HOM05D001170 ORTHO05D002759 7.5e-07 57.8 71 46.5
AL1G49430 Arabidopsis lyrata HOM05D001170 ORTHO05D002759 1.7e-06 56.6 71 45.1
Zm00001eb105530 Zea mays HOM05D001170 ORTHO05D006602 2.9e-06 55.8 80 43.8
Zm00001eb220880 Zea mays HOM05D001170 ORTHO05D006602 2.9e-06 55.8 80 43.8
Zm00001eb044380 Zea mays HOM05D001170 ORTHO05D006602 3.7e-06 55.5 80 42.5
Pp3c14_3630 Physcomitrium patens HOM05D001170 ORTHO05D006602 4.9e-06 55.1 53 49.1
Os10g0500700 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D006602 6.4e-06 54.7 80 41.2


User provided reference genes

Program Settings