Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 9.9e-58 226.5 108 100.0
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.0e-33 146.7 113 68.1
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.0e-33 146.7 111 67.6
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.6e-31 139.4 115 65.2
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.3e-30 135.6 114 64.9
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 5.1e-30 134.4 114 65.8
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 3.3e-29 131.7 111 65.8
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 5.7e-29 131.0 112 63.4
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.7e-29 131.0 111 64.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 5.7e-29 131.0 111 64.9
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 5.7e-29 131.0 111 64.9
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.0e-25 120.2 111 60.4
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.0e-25 120.2 111 60.4
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.0e-25 120.2 111 60.4
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 2.2e-25 119.0 114 60.5
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.4e-24 116.3 112 58.9
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.4e-24 116.3 112 58.9
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 3.2e-24 115.2 112 59.8
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.2e-24 115.2 113 57.5
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.2e-24 114.8 111 61.3
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 5.5e-24 114.4 111 59.5
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 7.2e-24 114.0 114 58.8
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.2e-23 113.2 114 58.8
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.2e-23 113.2 110 59.1
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 2.7e-23 112.1 113 59.3
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 4.7e-23 111.3 115 54.8
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 6.1e-23 110.9 111 60.4
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 6.1e-23 110.9 111 60.4
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 6.1e-23 110.9 111 58.6
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 6.1e-23 110.9 113 58.4
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.4e-22 109.8 116 56.0
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 2.3e-22 109.0 114 55.3
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 2.3e-22 109.0 95 60.0
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.3e-22 109.0 111 55.0
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 6.7e-22 107.5 112 56.2
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 6.7e-22 107.5 95 61.1
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.1e-21 106.7 111 56.8
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.1e-21 106.7 111 56.8
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.1e-21 106.7 112 55.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.5e-21 106.3 112 59.8
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.5e-21 106.3 114 55.3
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.0e-21 105.9 112 53.6
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.0e-21 105.9 113 56.6
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 2.0e-21 105.9 115 56.5
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.6e-21 105.5 111 55.9
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.6e-21 105.5 108 57.4
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 4.4e-21 104.8 119 53.8
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 5.7e-21 104.4 114 54.4
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 1.3e-20 103.2 114 52.6
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.3e-20 103.2 114 52.6
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.3e-20 103.2 114 52.6
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.7e-20 102.8 111 55.9
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.7e-20 102.8 114 52.6
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.7e-20 101.7 111 55.0
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 3.7e-20 101.7 112 53.6
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 3.7e-20 101.7 120 51.7
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.8e-20 101.3 114 53.5
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 4.8e-20 101.3 112 55.4
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.3e-20 100.9 111 54.1
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.3e-20 100.9 114 54.4
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 6.3e-20 100.9 113 54.9
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 6.3e-20 100.9 115 51.3
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 8.2e-20 100.5 112 54.5
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.1e-19 100.1 111 54.1
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.4e-19 99.8 112 54.5
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.4e-19 99.8 112 54.5
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 3.1e-19 98.6 112 53.6
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 4.1e-19 98.2 111 55.0
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.1e-19 98.2 111 55.0
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.1e-19 98.2 113 54.0
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 5.3e-19 97.8 111 54.1
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 6.9e-19 97.4 113 54.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 6.9e-19 97.4 114 50.9
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.1e-19 97.1 113 53.1
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.2e-18 96.7 111 52.3
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.2e-18 96.7 114 50.9
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.2e-18 96.7 112 53.6
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.2e-18 96.7 112 50.9
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.0e-18 95.9 112 53.6
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.0e-18 95.9 111 53.2
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.0e-18 95.9 111 53.2
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.0e-18 95.9 111 53.2
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.5e-18 94.7 127 51.2
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 5.9e-18 94.4 114 51.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.0e-17 93.6 114 50.9
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.0e-17 93.6 114 52.6
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.0e-17 93.6 114 52.6
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.0e-17 93.6 115 50.4
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.0e-17 93.6 110 52.7
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.7e-17 92.8 113 51.3
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.2e-17 92.4 120 50.8
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.2e-17 92.4 115 48.7
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 2.2e-17 92.4 115 49.6
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 2.2e-17 92.4 111 49.5
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 2.9e-17 92.0 116 49.1
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 2.9e-17 92.0 111 52.3
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.9e-17 92.0 114 50.0
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.9e-17 92.0 114 50.0
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.9e-17 92.0 116 50.9
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 6.5e-17 90.9 99 51.5
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-16 89.7 115 50.4
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.4e-16 89.7 115 50.4
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.4e-16 89.7 99 50.5
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.9e-16 89.4 107 49.5
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 2.5e-16 89.0 76 61.8
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.5e-16 89.0 115 47.0
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.5e-16 89.0 114 49.1
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 3.2e-16 88.6 117 49.6
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 3.2e-16 88.6 112 47.3
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 3.2e-16 88.6 107 50.5
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.2e-16 87.4 114 46.5
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 9.4e-16 87.0 114 48.2
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 9.4e-16 87.0 112 49.1
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 9.4e-16 87.0 109 46.8
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.4e-16 87.0 114 48.2
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 9.4e-16 87.0 117 47.0
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.6e-15 86.3 113 48.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.1e-15 85.9 114 45.6
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.1e-15 84.3 114 44.7
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 8.0e-15 84.0 112 48.2
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.8e-14 82.8 112 48.2
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.3e-14 82.4 111 48.6
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 6.7e-14 80.9 65 66.2
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.5e-13 79.7 113 46.9
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.0e-13 79.3 113 45.1
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 2.6e-13 79.0 107 45.8
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 7.4e-13 77.4 120 44.2
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 9.7e-13 77.0 65 64.6
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 9.7e-13 77.0 113 44.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 9.7e-13 77.0 124 41.1
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.2e-12 75.9 65 63.1
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 4.1e-11 71.6 65 58.5
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 5.0e-09 64.7 126 38.1
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.7e-06 54.3 59 50.8


User provided reference genes

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