Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 8.6e-76 287.0 151 100.0
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 9.0e-41 170.6 137 69.3
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 4.2e-38 161.8 127 69.3
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 1.6e-37 159.8 133 66.2
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 2.1e-37 159.5 142 66.2
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 8.7e-36 154.1 100 79.0
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 1.1e-35 153.7 138 58.7
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 1.3e-34 150.2 111 68.5
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 6.3e-34 147.9 99 73.7
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 3.1e-33 145.6 127 63.0
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 3.1e-33 145.6 96 76.0
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 3.1e-33 145.6 96 76.0
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 5.3e-33 144.8 107 68.2
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 5.3e-33 144.8 129 58.9
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 5.3e-33 144.8 138 60.1
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 6.9e-33 144.4 130 57.7
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 6.9e-33 144.4 126 61.9
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 6.9e-33 144.4 100 70.0
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 9.1e-33 144.1 127 62.2
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 9.1e-33 144.1 127 62.2
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 9.1e-33 144.1 113 63.7
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 1.5e-32 143.3 111 68.5
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.0e-32 142.9 104 70.2
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.0e-32 142.9 101 69.3
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.6e-32 142.5 144 57.6
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 2.6e-32 142.5 140 58.6
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 4.5e-32 141.7 127 61.4
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 4.5e-32 141.7 127 61.4
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 4.5e-32 141.7 110 62.7
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 5.9e-32 141.4 102 69.6
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.9e-32 141.4 101 68.3
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 5.9e-32 141.4 124 60.5
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 1.3e-31 140.2 137 56.9
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.3e-31 140.2 121 62.0
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.7e-31 139.8 102 68.6
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.7e-31 139.8 99 69.7
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.7e-31 139.8 154 51.9
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.7e-31 139.8 154 51.9
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 5.0e-31 138.3 129 61.2
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 5.0e-31 138.3 133 59.4
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 5.0e-31 138.3 120 60.8
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 6.5e-31 137.9 88 77.3
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 8.5e-31 137.5 112 64.3
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.5e-31 137.5 93 71.0
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.4e-30 136.7 101 66.3
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 1.9e-30 136.3 106 65.1
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 1.9e-30 136.3 128 59.4
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 3.2e-30 135.6 133 60.2
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 3.2e-30 135.6 137 55.5
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 3.2e-30 135.6 127 61.4
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 4.2e-30 135.2 139 59.0
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 4.2e-30 135.2 148 52.7
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.2e-29 133.7 116 63.8
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.2e-29 133.7 105 64.8
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.6e-29 133.3 100 66.0
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.6e-29 133.3 98 70.4
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 2.1e-29 132.9 143 53.1
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 2.1e-29 132.9 143 53.1
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 2.1e-29 132.9 91 71.4
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.1e-29 132.9 131 59.5
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 2.1e-29 132.9 100 65.0
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 3.6e-29 132.1 118 60.2
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 3.6e-29 132.1 137 56.2
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 6.1e-29 131.3 101 68.3
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 6.1e-29 131.3 109 57.8
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 6.1e-29 131.3 98 69.4
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.0e-28 130.6 117 62.4
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.0e-28 130.6 106 62.3
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.0e-28 130.6 128 55.5
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.4e-28 130.2 95 65.3
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.8e-28 129.8 89 70.8
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 2.3e-28 129.4 116 62.1
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 3.0e-28 129.0 117 60.7
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 3.0e-28 129.0 135 54.8
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 3.0e-28 129.0 101 65.3
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 3.9e-28 128.6 116 62.9
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 3.9e-28 128.6 116 62.9
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 5.1e-28 128.3 110 60.0
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 5.1e-28 128.3 136 51.5
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 6.7e-28 127.9 116 62.1
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 6.7e-28 127.9 116 62.1
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 6.7e-28 127.9 116 62.1
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 6.7e-28 127.9 133 56.4
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 8.8e-28 127.5 133 54.1
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.1e-27 127.1 107 61.7
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.1e-27 127.1 86 70.9
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 1.1e-27 127.1 126 54.0
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.1e-27 127.1 89 67.4
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 2.6e-27 125.9 89 67.4
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 2.6e-27 125.9 88 68.2
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 4.4e-27 125.2 126 53.2
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 7.4e-27 124.4 112 62.5
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 9.7e-27 124.0 81 71.6
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 9.7e-27 124.0 97 60.8
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 2.2e-26 122.9 87 70.1
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.4e-25 119.4 96 60.4
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 4.1e-25 118.6 89 62.9
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 1.2e-24 117.1 136 49.3
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 1.2e-24 117.1 116 54.3
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 5.9e-24 114.8 111 57.7
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 5.9e-24 114.8 84 65.5
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 2.2e-23 112.8 156 42.3
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.1e-22 110.5 88 59.1
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 3.6e-21 105.5 124 52.4
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 4.7e-21 105.1 78 62.8
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 2.3e-20 102.8 96 53.1
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 3.9e-20 102.1 90 55.6
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 6.7e-20 101.3 78 61.5
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 5.7e-19 98.2 115 51.3
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 5.7e-19 98.2 85 57.6
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 2.8e-18 95.9 70 70.0
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 8.2e-18 94.4 69 71.0
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 1.8e-17 93.2 125 47.2
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 2.4e-17 92.8 129 45.7
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 9.1e-17 90.9 102 46.1
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.7e-15 86.7 114 49.1
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 2.9e-15 85.9 58 70.7
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 6.5e-15 84.7 67 65.7
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 6.5e-15 84.7 64 64.1
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 3.6e-13 79.0 46 76.1
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 4.0e-12 75.5 82 53.7
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 6.7e-12 74.7 80 51.2
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 6.7e-12 74.7 80 51.2
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.6e-11 72.8 76 52.6
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 2.6e-11 72.8 48 66.7
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 1.1e-09 67.4 95 48.4
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 5.9e-08 61.6 46 67.4
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 5.9e-08 61.6 48 62.5
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 3.2e-06 55.8 73 46.6
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 3.2e-06 55.8 73 46.6
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 4.2e-06 55.5 82 46.3


User provided reference genes

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