Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 0.0e+00 1104.0 536 100.0
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 9.3e-290 999.6 536 89.7
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 1.1e-287 992.6 536 88.8
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 2.0e-284 981.9 536 88.2
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 4.8e-270 934.1 536 83.8
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.8e-269 932.2 535 82.4
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 3.4e-268 927.9 533 82.7
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 1.3e-267 926.0 533 82.7
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.6e-265 919.1 536 81.3
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.0e-264 916.4 536 80.8
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 1.8e-264 915.6 536 81.9
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.8e-264 915.6 529 82.0
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.8e-264 915.6 532 82.7
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 3.0e-264 914.8 537 81.6
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 8.7e-264 913.3 536 80.4
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.1e-263 912.9 536 81.9
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 7.4e-263 910.2 536 79.7
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.6e-262 909.1 536 81.2
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.8e-262 908.3 536 80.4
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 3.7e-262 907.9 536 80.4
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 3.7e-262 907.9 536 80.2
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 3.7e-262 907.9 535 80.6
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.7e-262 907.9 536 80.6
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 4.8e-262 907.5 536 80.4
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 4.8e-262 907.5 537 80.8
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 4.8e-262 907.5 537 81.6
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 1.4e-261 906.0 536 80.2
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.4e-261 906.0 536 81.7
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.4e-261 906.0 536 81.7
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 3.1e-261 904.8 537 80.6
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 4.1e-261 904.4 538 80.7
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 4.1e-261 904.4 536 80.0
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 5.3e-261 904.0 536 80.0
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 6.9e-261 903.7 536 80.0
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 6.9e-261 903.7 536 79.9
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.0e-260 902.1 536 81.3
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 2.0e-260 902.1 536 81.3
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 2.0e-260 902.1 536 79.7
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 3.4e-260 901.4 536 79.3
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 5.9e-260 900.6 536 79.3
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 7.7e-260 900.2 538 80.1
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.0e-259 899.8 536 79.1
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.0e-259 899.8 536 80.4
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.0e-259 899.8 536 79.9
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.3e-259 899.4 556 78.2
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 3.8e-259 897.9 536 79.9
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 6.5e-259 897.1 556 78.1
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 7.2e-258 893.6 537 80.3
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.2e-257 892.9 540 81.7
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 2.7e-257 891.7 536 78.7
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 2.7e-257 891.7 536 79.5
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 3.6e-257 891.3 536 78.9
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.6e-257 891.0 537 80.1
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.0e-256 889.8 536 79.3
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.0e-256 889.8 536 78.5
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.0e-256 889.8 536 78.9
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.4e-256 889.4 538 78.4
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.4e-256 889.4 536 78.2
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.8e-256 889.0 541 78.7
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 2.3e-256 888.6 530 79.6
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 2.3e-256 888.6 536 79.7
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.7e-256 887.1 536 78.5
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 8.8e-256 886.7 532 79.7
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.5e-255 885.9 543 77.9
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.5e-255 885.9 536 78.9
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 2.0e-255 885.6 536 78.7
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 2.5e-255 885.2 536 78.7
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 2.5e-255 885.2 535 80.0
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 4.3e-255 884.4 536 78.2
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 7.4e-255 883.6 536 78.2
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 7.4e-255 883.6 536 78.9
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 9.7e-255 883.2 536 77.8
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.7e-254 882.5 536 78.2
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.2e-254 882.1 536 77.4
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.8e-254 881.7 536 76.9
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 3.7e-254 881.3 536 78.7
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 3.7e-254 881.3 536 78.5
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 1.1e-253 879.8 536 77.4
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.4e-253 879.4 536 78.2
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 6.9e-253 877.1 536 78.4
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 6.9e-253 877.1 531 78.2
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.2e-252 876.3 537 78.6
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.6e-252 875.2 533 78.8
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 4.5e-252 874.4 537 79.7
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 1.0e-251 873.2 536 77.8
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 3.8e-251 871.3 530 78.7
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 5.5e-250 867.5 536 77.1
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 7.2e-250 867.1 537 77.3
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.6e-249 865.9 536 76.9
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 2.1e-249 865.5 530 76.6
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 2.1e-249 865.5 537 77.7
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 2.7e-249 865.1 536 76.9
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 4.7e-249 864.4 536 76.7
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 4.7e-249 864.4 537 76.7
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.0e-248 863.2 536 76.7
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.4e-248 862.8 537 77.1
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.3e-248 862.1 537 76.9
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 6.7e-248 860.5 536 76.9
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.5e-247 859.4 537 76.4
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 3.3e-247 858.2 536 75.9
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 7.0e-245 850.5 536 75.9
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 9.1e-245 850.1 536 75.9
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 1.2e-244 849.7 537 76.0
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 7.7e-244 847.0 530 74.3
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 2.5e-242 842.0 529 74.9
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 4.2e-242 841.3 535 75.3
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 8.8e-240 833.6 529 74.1
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.4e-237 825.5 683 62.7
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.2e-236 823.2 497 79.7
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.9e-234 815.8 495 79.2
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.9e-234 815.8 536 74.1
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.7e-230 802.7 494 77.9
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.5e-228 795.0 560 70.0
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.2e-227 792.3 667 62.2
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 5.4e-221 771.2 535 67.9
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 5.4e-221 771.2 535 68.6
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 7.7e-220 767.3 534 67.2
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.2e-213 745.3 536 65.3
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 3.0e-211 738.8 533 66.2
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 2.9e-206 722.2 537 68.9
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.8e-200 703.0 526 62.5
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.6e-196 689.9 442 76.2
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.0e-195 687.2 528 61.9
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.5e-191 673.3 405 77.8
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 6.4e-190 667.9 500 64.4
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.7e-187 659.8 526 61.2
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 2.1e-180 636.3 375 79.5
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.3e-174 617.1 496 64.9
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.0e-163 579.3 423 67.1
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.3e-155 553.9 704 48.2
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 2.2e-134 483.4 300 75.7
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.6e-132 477.2 541 49.2
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 2.2e-121 440.3 312 69.2
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 2.7e-119 433.3 537 46.6
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.9e-101 374.0 410 49.0
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 4.1e-96 356.3 262 66.4
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.4e-75 288.1 184 72.3
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 2.5e-61 240.7 148 77.7
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.5e-61 240.7 148 73.6
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 7.4e-45 186.0 140 65.7
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.3e-38 165.2 219 43.8
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 2.5e-37 161.0 104 73.1
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 2.5e-37 161.0 94 80.9
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 7.6e-34 149.4 87 82.8
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 1.6e-31 141.7 110 67.3
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.3e-20 105.5 97 61.9
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 2.2e-20 104.8 89 61.8
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 6.3e-12 76.6 46 73.9
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 3.1e-11 74.3 53 64.2
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 9.1e-11 72.8 41 80.5
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 3.5e-10 70.9 45 75.6
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 3.8e-09 67.4 42 76.2
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 3.8e-09 67.4 42 76.2
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 2.5e-08 64.7 47 70.2
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 1.2e-07 62.4 66 57.6
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 6.1e-07 60.1 132 31.1
VMungo0540G1605 Vigna mungo HOM05D001661 ORTHO05D001575 1.0e-06 59.3 146 28.8
SEGI_03802 Sequoiadendron giganteum HOM05D001661 ORTHO05D001575 3.0e-06 57.8 183 27.3
PGR042G1447 Punica granatum HOM05D001661 ORTHO05D001575 4.0e-06 57.4 109 28.4
ClCG10G009660 Citrullus lanatus HOM05D001661 ORTHO05D001575 8.8e-06 56.2 131 29.0
CsaV3_4G014730 Cucumis sativus L. HOM05D001661 ORTHO05D001575 8.8e-06 56.2 131 29.0
Eucgr.I02608 Eucalyptus grandis HOM05D001661 ORTHO05D001575 8.8e-06 56.2 128 28.1


User provided reference genes

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