Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 0.0e+00 1173.7 589 100.0
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 8.9e-302 1039.6 594 87.9
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 5.6e-288 993.8 579 85.8
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 6.2e-287 990.3 587 84.0
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 4.0e-286 987.6 587 83.3
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 6.8e-286 986.9 574 84.7
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 9.2e-283 976.5 552 87.5
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.1e-282 975.3 573 84.5
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 2.7e-282 974.9 573 84.5
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 2.7e-282 974.9 573 84.5
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.1e-280 969.5 574 84.3
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.1e-280 969.5 569 85.6
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 2.5e-280 968.4 548 87.2
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.3e-280 968.0 552 86.4
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 4.3e-280 967.6 553 85.2
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 7.3e-280 966.8 551 86.8
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 9.6e-280 966.5 552 86.2
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 6.2e-279 963.8 591 82.4
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 6.2e-279 963.8 551 86.4
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.1e-278 963.0 594 82.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.4e-278 961.8 588 82.1
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.4e-278 961.8 579 82.9
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 3.1e-278 961.4 588 82.7
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 4.0e-278 961.1 594 82.0
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 4.0e-278 961.1 588 83.3
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 6.9e-278 960.3 554 85.7
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.9e-278 960.3 591 82.4
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 8.9e-278 959.9 589 81.5
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.2e-277 959.5 580 83.3
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.2e-277 959.5 581 81.9
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 1.2e-277 959.5 581 82.3
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 7.6e-277 956.8 582 82.0
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 9.9e-277 956.4 585 82.4
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 9.9e-277 956.4 585 82.1
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 9.9e-277 956.4 548 85.9
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.3e-276 956.1 572 82.9
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.7e-276 955.7 588 82.3
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 3.8e-276 954.5 608 80.3
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 6.4e-276 953.7 605 81.2
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 1.9e-275 952.2 575 83.0
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.9e-275 952.2 550 84.4
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 2.4e-275 951.8 553 84.8
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.4e-275 951.8 588 81.8
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 3.2e-275 951.4 570 83.5
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.2e-275 951.4 588 81.8
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 3.2e-275 951.4 572 83.6
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.6e-274 949.1 588 81.8
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 2.7e-274 948.3 589 81.2
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 3.5e-274 948.0 585 80.3
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 4.6e-274 947.6 610 79.3
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.7e-273 945.7 578 82.2
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 2.3e-273 945.3 573 82.7
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 2.3e-273 945.3 585 81.5
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 8.7e-273 943.3 577 81.1
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.5e-272 941.8 553 85.2
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.3e-272 941.4 586 81.1
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 4.3e-272 941.0 590 80.5
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 4.3e-272 941.0 557 82.9
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 5.6e-272 940.6 594 80.3
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 7.3e-272 940.3 594 80.1
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 7.3e-272 940.3 592 81.2
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.6e-271 939.1 580 81.7
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 2.1e-271 938.7 584 80.8
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 4.8e-271 937.6 573 82.0
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.1e-270 936.4 567 82.2
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 6.9e-270 933.7 556 81.8
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.0e-269 932.2 589 80.5
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.0e-269 932.2 600 79.0
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 4.5e-269 931.0 556 83.8
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 7.6e-269 930.2 603 78.1
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 2.9e-268 928.3 591 79.0
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.1e-267 926.4 588 80.4
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 4.2e-267 924.5 590 80.3
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 5.4e-267 924.1 588 80.1
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 2.7e-266 921.8 578 79.6
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 3.0e-265 918.3 539 84.4
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 3.9e-265 917.9 528 85.6
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 8.7e-265 916.8 576 78.8
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 2.5e-264 915.2 623 77.0
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 4.3e-264 914.4 585 79.5
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.4e-262 909.4 543 82.7
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.8e-262 909.1 594 75.9
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 6.4e-260 900.6 619 75.6
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.5e-258 894.8 590 76.8
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 2.3e-257 892.1 570 78.1
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 5.6e-256 887.5 588 77.4
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 5.3e-254 880.9 530 83.4
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 9.0e-254 880.2 583 74.8
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.2e-252 875.5 558 79.4
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.8e-252 874.8 530 82.8
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.1e-251 873.2 578 75.4
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 5.5e-251 870.9 652 70.7
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 5.7e-248 860.9 549 78.9
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 5.7e-248 860.9 549 79.1
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.3e-247 859.8 542 77.3
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 1.1e-246 856.7 591 75.0
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 1.8e-246 855.9 576 76.6
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 7.6e-245 850.5 479 86.0
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.5e-243 844.3 587 76.3
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 3.9e-241 838.2 475 86.1
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 4.3e-240 834.7 584 73.8
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 3.7e-239 831.6 555 73.0
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.5e-235 818.9 463 86.8
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 1.6e-234 816.2 576 70.1
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 2.7e-234 815.5 578 72.8
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 1.1e-227 793.5 542 72.1
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 3.2e-227 792.0 465 83.0
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 6.1e-226 787.7 551 70.8
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 7.9e-226 787.3 532 72.4
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.0e-220 770.4 572 71.7
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.2e-211 738.4 576 67.9
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 3.8e-196 688.7 405 85.7
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 4.7e-194 681.8 523 70.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 9.2e-190 667.5 541 61.6
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 5.4e-166 588.6 410 74.9
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 1.6e-165 587.0 511 60.1
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.3e-164 583.9 341 85.3
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 9.6e-163 577.8 554 59.0
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 3.4e-160 569.3 356 80.9
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.0e-156 557.8 544 54.6
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 3.5e-133 479.6 559 48.8
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 4.6e-133 479.2 257 91.8
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 3.1e-97 360.1 242 74.8
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 6.3e-90 335.9 188 81.9
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 2.4e-73 280.8 378 46.6
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 5.0e-71 273.1 206 66.0
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.4e-52 211.8 183 56.8
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.3e-46 190.7 116 81.9
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 3.6e-45 187.2 154 66.2
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 2.2e-42 177.9 156 64.1
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 1.6e-37 161.8 102 78.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 6.2e-37 159.8 118 61.9
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.1e-30 139.0 314 32.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 4.5e-27 127.1 312 33.0
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.7e-26 125.2 73 86.3
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 4.0e-20 104.0 57 82.5
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.0e-18 99.4 58 84.5
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 3.7e-13 80.9 151 41.7
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 1.4e-12 79.0 126 41.3
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 3.1e-12 77.8 42 76.2
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 9.0e-12 76.3 107 44.9
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 9.0e-12 76.3 45 68.9
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 1.4e-09 68.9 42 78.6
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 4.2e-09 67.4 70 60.0
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 3.6e-08 64.3 35 77.1
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 4.6e-08 63.9 83 53.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 6.1e-08 63.5 37 83.8
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 2.0e-06 58.5 112 36.6
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 7.4e-06 56.6 55 56.4


User provided reference genes

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