Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.1e-231 806.2 384 100.0
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 3.4e-137 492.3 333 70.3
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.2e-136 489.6 334 70.1
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 8.5e-136 487.6 333 69.7
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 8.5e-136 487.6 334 70.1
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 8.5e-136 487.6 334 70.1
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.2e-134 483.8 333 71.8
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 3.6e-134 482.3 334 68.9
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 4.7e-134 481.9 331 69.2
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.4e-133 480.3 336 68.2
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 3.9e-133 478.8 335 67.8
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 6.7e-133 478.0 332 68.4
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 6.7e-133 478.0 334 68.9
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 6.7e-133 478.0 334 68.9
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 8.8e-133 477.6 333 68.5
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 2.6e-132 476.1 333 71.2
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 3.3e-132 475.7 333 69.1
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 9.7e-132 474.2 332 70.2
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.7e-131 473.4 333 67.6
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 2.2e-131 473.0 334 67.1
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 2.8e-131 472.6 334 68.0
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 6.3e-131 471.5 334 68.9
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 1.4e-130 470.3 334 68.0
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.4e-130 470.3 334 68.0
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 2.4e-130 469.5 335 67.5
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 2.4e-130 469.5 332 67.5
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.4e-130 469.5 333 69.4
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.4e-130 469.5 332 69.0
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 4.1e-130 468.8 333 67.6
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 5.3e-130 468.4 334 66.8
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 5.3e-130 468.4 332 69.0
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 5.3e-130 468.4 332 67.5
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 5.3e-130 468.4 335 67.2
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 7.0e-130 468.0 335 67.8
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.2e-129 467.2 333 67.0
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.2e-129 467.2 334 68.3
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-129 467.2 334 67.7
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.2e-129 467.2 333 67.9
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.2e-129 467.2 333 68.5
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.6e-129 466.8 334 67.1
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 2.0e-129 466.5 334 67.7
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 2.6e-129 466.1 328 68.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 3.5e-129 465.7 334 67.4
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 4.5e-129 465.3 332 66.3
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.7e-129 464.5 333 66.1
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 1.3e-128 463.8 336 67.3
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.3e-128 463.8 333 66.1
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 1.7e-128 463.4 333 67.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.7e-128 463.4 333 67.3
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 1.7e-128 463.4 332 66.3
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 2.2e-128 463.0 334 65.9
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.9e-128 462.6 333 67.0
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.9e-128 462.6 333 67.3
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 3.8e-128 462.2 334 68.0
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 8.5e-128 461.1 331 66.8
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 8.5e-128 461.1 334 67.1
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.1e-127 460.7 334 66.5
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.1e-127 460.7 334 66.5
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.5e-127 460.3 333 67.3
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 2.5e-127 459.5 336 66.7
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.2e-127 458.8 333 67.3
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 4.2e-127 458.8 333 67.3
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 5.5e-127 458.4 334 65.6
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.5e-127 458.4 333 67.0
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 7.2e-127 458.0 330 66.4
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 9.4e-127 457.6 334 65.9
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 1.2e-126 457.2 333 65.5
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.6e-126 456.8 333 64.6
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 2.1e-126 456.4 334 65.9
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.7e-126 456.1 334 65.6
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 4.7e-126 455.3 334 65.0
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.0e-125 454.1 331 66.2
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 2.3e-125 453.0 332 65.4
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.0e-125 452.2 333 65.2
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 5.2e-125 451.8 331 66.2
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 1.5e-124 450.3 333 65.2
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.6e-124 449.5 333 67.0
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 3.3e-124 449.1 333 66.1
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.3e-123 447.2 332 65.1
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 8.2e-123 444.5 334 64.4
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.1e-122 444.1 331 63.7
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.4e-122 443.0 338 66.0
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 3.1e-122 442.6 331 63.4
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 4.1e-122 442.2 335 63.9
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.2e-121 440.7 331 64.0
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.7e-121 439.5 321 65.7
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 3.5e-121 439.1 333 63.4
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.2e-120 436.4 332 63.9
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 6.5e-120 434.9 346 61.6
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 6.5e-120 434.9 335 62.7
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.9e-119 433.3 333 64.9
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.2e-117 425.2 332 64.8
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 8.8e-117 424.5 333 61.3
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.2e-116 424.1 334 61.4
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.5e-116 421.4 334 60.2
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.7e-115 420.2 346 59.0
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.7e-115 420.2 309 64.7
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 8.3e-115 417.9 333 61.9
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 1.4e-114 417.2 333 60.4
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.8e-114 416.8 331 61.6
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 3.5e-113 412.5 335 62.1
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 7.7e-113 411.4 319 63.9
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.0e-112 411.0 332 60.2
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.0e-112 411.0 336 59.5
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 2.2e-112 409.8 346 58.1
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 6.5e-112 408.3 336 59.2
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.5e-111 407.1 331 60.4
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.9e-111 406.8 331 61.6
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 5.5e-111 405.2 331 61.0
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.1e-110 403.3 332 60.8
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 6.8e-109 398.3 321 61.4
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 7.5e-108 394.8 345 57.1
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 3.1e-106 389.4 293 64.2
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.0e-105 386.7 308 60.4
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.6e-102 377.1 381 51.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 8.0e-102 374.8 295 63.4
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.6e-97 360.5 333 55.0
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 5.0e-96 355.5 250 66.8
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 3.4e-92 342.8 266 63.5
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.1e-90 337.8 348 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 8.6e-88 328.2 339 50.1
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.2e-84 317.8 381 44.6
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.1e-81 307.0 332 51.2
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 4.6e-81 305.8 348 45.7
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.1e-77 293.1 275 53.5
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 1.1e-74 284.6 223 64.6
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.1e-74 284.6 276 54.7
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.1e-74 284.6 309 50.2
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.9e-74 283.9 215 65.6
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.9e-74 283.9 407 40.0
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.1e-62 243.8 255 51.0
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 9.0e-61 238.4 182 61.5
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 2.1e-57 227.3 188 56.9
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 6.7e-56 222.2 361 39.1
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.8e-51 206.5 251 47.4
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 2.3e-48 197.2 146 64.4
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.9e-47 194.1 187 52.4
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.1e-45 188.3 146 61.0
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 7.6e-44 182.2 135 65.9
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.6e-41 174.5 150 57.3
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 4.3e-39 166.4 331 35.0
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.4e-37 161.4 136 57.4
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.4e-37 161.4 136 57.4
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.2e-25 121.7 90 62.2
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 2.7e-25 120.6 88 63.6
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 4.6e-25 119.8 111 56.8
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 8.8e-24 115.5 155 43.2
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 7.4e-23 112.5 406 26.4
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 3.3e-15 87.0 76 53.9
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 3.8e-11 73.6 68 54.4
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 8.5e-11 72.4 39 84.6
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 8.0e-09 65.9 68 51.5
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.4e-08 65.1 73 45.2
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 9.7e-07 58.9 51 60.8


User provided reference genes

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