Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 3.4e-169 598.2 290 100.0
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.3e-117 426.8 298 71.8
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 3.3e-116 422.2 296 71.6
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 2.8e-115 419.1 295 70.5
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.8e-114 416.4 289 70.2
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 4.9e-112 408.3 280 70.7
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 1.4e-111 406.8 288 68.8
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 5.5e-111 404.8 288 69.1
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 2.7e-110 402.5 295 67.8
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 1.0e-109 400.6 288 68.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.3e-109 400.2 294 66.0
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 8.7e-109 397.5 294 66.3
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 1.3e-107 393.7 282 67.7
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.4e-106 390.2 297 66.0
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.4e-106 389.4 285 68.4
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 6.9e-106 387.9 287 66.6
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.5e-105 386.7 288 66.7
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 3.8e-104 382.1 285 66.7
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 5.0e-104 381.7 299 64.2
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 6.5e-104 381.3 291 65.6
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 6.5e-104 381.3 288 67.4
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.1e-103 380.6 275 67.3
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 3.2e-103 379.0 290 64.5
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 3.2e-103 379.0 287 66.2
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.2e-103 378.6 299 63.9
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.2e-103 378.6 299 63.9
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 5.5e-103 378.3 291 65.3
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 5.5e-103 378.3 274 67.2
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 5.5e-103 378.3 299 63.9
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.6e-102 376.7 290 65.2
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.6e-102 376.7 284 65.1
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.1e-102 376.3 295 65.1
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 6.1e-102 374.8 275 66.2
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 3.0e-101 372.5 294 65.3
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 3.9e-101 372.1 294 64.3
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 3.9e-101 372.1 294 62.9
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.5e-100 370.2 296 61.1
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.5e-100 369.4 293 63.5
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 5.7e-100 368.2 277 65.3
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 7.4e-100 367.9 278 64.4
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 9.7e-100 367.5 258 68.2
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 9.7e-100 367.5 290 62.4
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 3.1e-98 362.5 268 64.9
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.3e-98 361.7 293 60.4
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 3.4e-97 359.0 231 72.3
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.3e-96 357.1 291 60.5
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.9e-96 355.9 275 64.7
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 5.0e-96 355.1 283 61.1
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 6.5e-96 354.8 284 63.0
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 6.5e-96 354.8 286 60.5
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.5e-96 354.8 286 62.2
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 8.5e-96 354.4 245 69.0
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.4e-95 353.6 269 65.1
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.9e-95 353.2 285 62.8
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 2.5e-95 352.8 276 61.6
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 3.2e-95 352.4 280 62.9
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 4.2e-95 352.1 282 62.1
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 5.5e-95 351.7 276 60.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 9.4e-95 350.9 270 61.9
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.2e-94 350.5 267 62.5
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.6e-94 350.1 298 59.1
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.6e-94 350.1 276 61.6
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 6.1e-94 348.2 286 62.9
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.0e-93 347.4 273 61.5
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 3.0e-93 345.9 281 60.1
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.9e-93 345.5 267 61.8
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 3.3e-92 342.4 281 60.1
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 3.3e-92 342.4 287 59.6
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 5.7e-92 341.7 291 57.4
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 7.4e-92 341.3 249 65.9
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 3.7e-91 339.0 284 59.5
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 6.3e-91 338.2 276 59.1
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 8.2e-91 337.8 283 60.4
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 1.4e-90 337.0 286 58.0
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.4e-90 337.0 280 58.9
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.4e-90 336.3 275 58.5
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 2.4e-90 336.3 285 59.6
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 4.1e-90 335.5 257 59.9
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 5.9e-89 331.6 289 59.2
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 7.7e-89 331.3 285 58.6
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.3e-88 330.5 293 58.0
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.2e-88 329.7 294 57.8
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 3.2e-87 325.9 280 58.2
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 4.2e-87 325.5 259 62.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.8e-85 320.1 297 56.2
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.0e-85 319.3 257 61.5
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.5e-84 317.0 319 51.7
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 2.0e-84 316.6 285 56.5
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.6e-81 306.2 300 53.3
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 4.7e-78 295.4 257 56.0
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.8e-74 283.5 298 47.0
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 2.2e-72 276.6 271 50.9
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.9e-71 273.5 234 58.5
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 2.3e-69 266.5 286 46.5
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 8.8e-69 264.6 287 47.0
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 8.8e-69 264.6 258 53.1
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.2e-68 264.2 266 48.9
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.6e-68 263.1 284 47.9
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 2.6e-68 263.1 267 49.1
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-67 260.4 270 47.8
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 6.3e-67 258.5 266 48.5
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 6.3e-67 258.5 266 48.5
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 8.3e-67 258.1 258 49.6
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.8e-66 256.9 267 47.6
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 4.1e-66 255.8 256 49.6
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.2e-65 254.2 269 46.5
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-65 253.4 275 46.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.7e-65 253.1 267 47.6
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 4.5e-65 252.3 275 47.6
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.0e-64 251.1 274 46.4
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.6e-62 243.8 266 45.9
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.5e-60 237.3 277 45.5
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.1e-58 229.2 219 57.1
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 4.1e-58 229.2 257 43.6
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 3.8e-56 222.6 282 47.2
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.8e-50 203.8 241 42.7
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.3e-48 197.6 266 42.1
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.0e-46 188.3 207 46.9
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.8e-45 187.2 241 43.6
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 4.0e-45 186.0 266 39.1
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.3e-40 171.0 227 40.5
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-36 157.5 193 46.1
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-36 157.1 276 38.8
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 7.5e-36 155.2 192 44.8
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 7.5e-36 155.2 197 46.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.9e-35 153.3 192 44.8
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.1e-34 151.4 192 44.8
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-34 151.0 192 45.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.2e-34 149.8 190 46.8
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-34 149.1 197 46.2
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 6.6e-32 142.1 240 37.5
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 5.6e-31 139.0 244 38.1
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-30 137.9 275 35.6
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.1e-29 134.8 146 45.2
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 4.0e-29 132.9 140 50.0
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.2e-28 131.3 208 40.9
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.4e-26 123.6 162 43.8
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 3.2e-26 123.2 140 49.3
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 4.6e-25 119.4 175 38.3
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-22 110.2 197 39.6
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-22 110.2 197 39.6
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.1e-21 108.2 169 34.9
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.3e-16 91.3 79 54.4
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 8.7e-16 88.6 91 51.6
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 5.6e-15 85.9 66 54.5
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 5.6e-15 85.9 66 54.5
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.1e-13 81.6 119 42.0
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.4e-12 76.6 100 45.0
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 1.3e-06 58.2 159 28.3


User provided reference genes

Program Settings