Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.5e-183 644.4 320 100.0
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.9e-110 402.1 320 63.8
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.0e-106 389.8 330 62.4
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.6e-100 370.2 316 60.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 8.5e-97 357.8 221 78.3
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.4e-91 340.5 309 56.3
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 3.1e-91 339.3 293 57.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.1e-91 337.8 261 62.1
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 2.9e-89 332.8 296 55.4
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 3.8e-89 332.4 295 56.6
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.5e-89 331.3 284 58.8
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.1e-88 330.9 267 62.2
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.4e-88 330.5 259 61.0
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.9e-88 330.1 261 60.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.2e-88 329.3 315 54.0
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.2e-88 329.3 314 54.5
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 7.2e-88 328.2 318 53.1
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.6e-87 327.0 259 61.4
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 3.6e-87 325.9 221 70.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.0e-86 324.3 310 53.5
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.8e-86 323.6 270 58.1
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.3e-86 323.2 262 59.9
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.0e-86 322.8 304 54.3
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 3.9e-86 322.4 323 53.9
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 3.9e-86 322.4 262 60.7
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 5.1e-86 322.0 328 54.3
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 6.7e-86 321.6 321 53.9
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 6.7e-86 321.6 322 54.0
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.1e-85 320.9 307 55.0
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.0e-85 320.1 244 62.3
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 2.6e-85 319.7 222 69.4
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 2.6e-85 319.7 259 61.8
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.6e-85 319.7 260 61.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.3e-85 319.3 319 54.9
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 5.7e-85 318.5 328 52.1
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 1.3e-84 317.4 322 52.8
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.3e-84 317.4 284 56.0
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.7e-84 317.0 301 53.8
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.7e-84 317.0 259 62.5
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 4.8e-84 315.5 221 67.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 8.2e-84 314.7 283 58.7
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 8.2e-84 314.7 267 58.1
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.8e-83 313.5 259 58.7
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.8e-83 313.5 259 61.0
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.4e-83 313.2 297 52.9
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.4e-83 313.2 318 51.3
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 2.4e-83 313.2 263 59.7
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 2.4e-83 313.2 288 55.2
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.1e-83 312.8 323 49.5
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.1e-83 312.8 269 58.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.1e-83 312.4 301 53.2
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 9.1e-83 311.2 325 51.4
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 9.1e-83 311.2 259 61.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.2e-82 310.8 272 57.0
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 3.4e-82 309.3 260 56.9
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 7.7e-82 308.1 261 58.6
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.0e-81 307.8 315 52.4
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.3e-81 307.4 311 51.4
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.9e-81 306.2 221 64.7
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.9e-81 306.2 218 66.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.9e-81 306.2 290 54.1
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.5e-80 303.1 338 47.6
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.5e-80 303.1 262 56.1
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 5.5e-80 302.0 338 47.6
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.6e-79 300.4 296 50.3
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.6e-79 300.4 261 55.9
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.0e-78 297.7 310 49.7
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.0e-78 296.2 318 50.0
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 6.7e-78 295.0 272 55.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 6.7e-78 295.0 315 50.8
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.7e-78 295.0 256 55.1
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 8.8e-78 294.7 220 61.8
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.1e-77 294.3 257 54.5
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 7.4e-77 291.6 221 63.3
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 2.2e-76 290.0 258 53.9
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 6.3e-76 288.5 259 53.7
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 8.2e-76 288.1 387 43.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.4e-75 287.3 395 43.0
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.8e-75 287.0 263 53.2
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.4e-75 286.6 315 49.8
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.1e-75 285.8 296 49.7
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 7.0e-75 285.0 274 52.6
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-74 284.3 261 53.3
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.0e-74 283.5 307 47.9
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.6e-74 283.1 259 52.9
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.6e-74 283.1 258 53.5
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 4.5e-74 282.3 299 48.5
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-73 280.4 310 47.7
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.7e-73 280.4 307 48.5
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.7e-73 280.4 310 47.7
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.2e-73 280.0 407 42.8
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 5.0e-73 278.9 310 47.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 5.0e-73 278.9 307 48.5
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-72 276.9 300 47.7
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-72 276.6 294 48.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-71 274.2 261 50.6
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-71 274.2 259 54.8
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 2.7e-71 273.1 297 46.8
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.0e-70 271.2 262 54.2
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.8e-70 270.4 303 46.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.0e-70 269.6 262 53.4
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.2e-70 268.9 221 56.6
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.8e-70 268.1 308 47.7
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.5e-69 267.3 262 51.9
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.5e-69 267.3 250 52.0
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.6e-69 266.5 276 50.4
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 3.3e-69 266.2 291 51.2
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.3e-69 266.2 217 59.0
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 5.7e-69 265.4 260 50.8
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 7.5e-69 265.0 245 52.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 9.7e-69 264.6 328 45.7
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-68 264.2 279 48.7
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.2e-68 263.5 297 46.8
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.8e-68 263.1 261 49.8
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.4e-67 260.8 308 46.4
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 8.5e-65 251.5 277 47.7
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.2e-63 247.7 197 61.9
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 6.1e-63 245.4 204 58.3
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 4.0e-62 242.7 259 48.6
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.0e-62 242.7 286 45.5
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 6.8e-62 241.9 266 45.5
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 3.4e-61 239.6 195 59.0
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.3e-60 237.7 195 58.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 8.3e-60 235.0 216 51.9
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.6e-57 224.9 217 52.1
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.9e-56 223.8 178 61.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.1e-55 220.3 217 52.1
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 5.2e-54 215.7 205 52.7
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 8.8e-54 214.9 205 53.2
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 8.8e-54 214.9 205 53.2
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.8e-54 214.9 218 50.9
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.2e-53 214.5 215 50.7
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.5e-53 214.2 205 52.2
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.4e-53 213.0 198 54.5
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.4e-53 213.0 198 55.1
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.3e-52 211.1 209 51.2
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.5e-48 196.8 227 47.1
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 9.5e-48 194.9 161 58.4
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.8e-47 193.4 279 40.9
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.7e-44 184.1 181 56.4
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 3.7e-44 183.0 128 68.0
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 3.2e-43 179.9 195 43.6
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.3e-41 173.7 235 43.8
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.0e-41 173.3 138 63.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.5e-40 171.0 143 58.0
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.5e-40 170.2 206 50.5
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 5.6e-40 169.1 169 49.1
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-37 160.2 134 59.7
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 7.5e-37 158.7 120 63.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 5.4e-35 152.5 120 62.5
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 2.7e-34 150.2 133 59.4
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 2.7e-34 150.2 237 37.1
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 4.6e-34 149.4 289 34.9
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.3e-33 147.9 133 58.6
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 2.5e-32 143.7 186 47.8
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.4e-30 137.9 184 41.8
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 3.1e-30 136.7 138 45.7
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.8e-30 135.6 173 41.6
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 4.9e-28 129.4 181 44.8
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 7.8e-26 122.1 251 33.9
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.3e-24 115.5 83 63.9
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.7e-23 112.8 76 67.1
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 6.0e-18 95.9 84 53.6
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.0e-17 95.1 86 52.3
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.3e-16 90.1 88 51.1
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.7e-15 86.3 85 55.3
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.4e-11 74.7 175 33.1
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.2e-11 73.6 151 31.8
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 1.2e-10 71.6 138 34.1
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.0e-09 68.6 180 31.7
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.0e-09 67.0 200 30.0
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.6e-07 60.1 59 45.8
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 6.2e-07 59.3 66 54.5
Manes.11G099000 Manihot esculenta HOM05D001535 ORTHO05D003710 4.0e-06 56.6 132 31.1
Os03g0136200 Oryza sativa ssp. japonica HOM05D001535 ORTHO05D003710 5.3e-06 56.2 113 32.7
SalBow1G2146 Salvia bowleyana HOM05D001535 ORTHO05D003710 6.9e-06 55.8 110 32.7
Nitab4.5_0011832g0010 Nicotiana tabacum HOM05D001535 ORTHO05D003710 9.0e-06 55.5 105 32.4


User provided reference genes

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