Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 1.6e-269 932.2 477 100.0
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.1e-121 441.0 477 53.2
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 4.9e-117 425.6 478 51.3
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 5.5e-108 395.6 500 48.4
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.8e-104 383.3 472 48.5
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 3.1e-103 379.8 478 46.0
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-99 367.9 479 44.3
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.1e-99 367.1 480 44.6
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 3.5e-99 366.3 477 45.9
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.0e-99 365.5 478 44.8
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 6.0e-99 365.5 480 45.0
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-97 360.5 474 44.5
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.9e-97 360.5 476 46.0
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.5e-97 360.1 478 43.5
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 2.5e-97 360.1 478 44.4
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.3e-96 357.8 480 44.0
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.4e-95 354.4 480 43.5
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.8e-95 354.0 474 44.3
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.1e-95 353.2 480 43.3
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.1e-95 352.8 494 42.5
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 2.0e-94 350.5 477 42.8
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 3.9e-90 336.3 477 42.8
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 9.7e-89 331.6 477 41.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.7e-89 331.6 477 42.1
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.2e-88 330.5 475 39.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.2e-88 330.5 475 39.2
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.2e-88 330.5 477 41.3
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.8e-88 330.1 478 40.0
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 3.7e-88 329.7 478 40.4
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.8e-88 329.3 477 41.9
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.8e-88 329.3 476 42.2
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.4e-87 327.8 478 40.6
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.1e-87 326.6 474 40.9
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.2e-85 320.5 475 40.0
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 2.9e-85 320.1 478 39.3
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.9e-85 320.1 497 40.2
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-84 317.8 476 41.4
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 5.5e-84 315.8 474 40.3
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 9.4e-84 315.1 480 39.6
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 9.4e-84 315.1 475 39.4
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 3.6e-83 313.2 478 41.4
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 4.6e-83 312.8 480 39.6
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 7.9e-83 312.0 477 40.9
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 3.3e-81 306.6 476 38.7
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 7.4e-81 305.4 476 38.9
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 3.7e-80 303.1 476 39.9
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 6.3e-80 302.4 475 40.0
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 8.2e-80 302.0 475 40.0
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.8e-79 300.8 477 39.8
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 2.4e-79 300.4 470 40.6
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 3.1e-79 300.1 514 39.9
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 4.1e-79 299.7 473 38.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 9.1e-79 298.5 432 42.1
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.0e-78 297.4 482 38.8
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 2.0e-78 297.4 472 37.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 2.6e-78 297.0 478 39.5
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 4.5e-78 296.2 484 38.4
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 4.5e-78 296.2 478 39.7
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.2e-77 293.9 478 40.2
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 2.9e-77 293.5 478 38.1
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 8.5e-77 292.0 477 37.7
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 8.5e-77 292.0 475 38.5
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.1e-76 291.6 576 36.1
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.9e-76 290.8 472 40.0
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.9e-76 290.8 472 40.0
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 5.5e-76 289.3 476 38.9
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.7e-75 287.0 441 39.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.6e-75 286.6 475 37.9
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.8e-74 284.3 479 37.6
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 5.2e-74 282.7 480 37.9
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.5e-73 281.2 478 39.1
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.3e-73 280.0 478 38.7
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 3.3e-73 280.0 478 37.9
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 3.3e-73 280.0 516 37.0
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 5.7e-73 279.3 478 36.2
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 9.7e-73 278.5 426 41.1
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.7e-72 277.7 478 38.7
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 6.3e-72 275.8 477 36.9
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.2e-70 271.6 478 36.0
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.5e-70 270.0 472 38.1
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 4.5e-70 269.6 478 36.2
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 2.9e-69 266.9 480 35.6
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 3.8e-69 266.5 481 35.6
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.5e-68 264.6 472 34.3
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.5e-68 263.8 471 35.0
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 4.2e-68 263.1 427 39.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.2e-67 261.5 476 35.3
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 4.7e-67 259.6 472 35.0
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 4.7e-67 259.6 477 35.4
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 4.7e-67 259.6 425 39.3
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 6.1e-67 259.2 472 33.5
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.2e-66 256.1 473 34.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 3.3e-65 253.4 472 33.1
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.3e-65 253.4 472 34.3
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 5.7e-65 252.7 474 33.1
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 9.7e-65 251.9 472 33.9
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.8e-64 250.4 472 32.6
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 8.2e-64 248.8 471 33.3
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.4e-63 247.3 471 33.5
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-63 247.3 205 62.0
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.3e-63 246.1 205 62.0
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 5.3e-63 246.1 460 35.0
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 7.0e-63 245.7 470 33.4
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 7.0e-63 245.7 464 37.1
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 9.1e-63 245.4 205 61.5
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.6e-62 244.6 476 34.5
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 2.7e-62 243.8 472 32.4
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 4.5e-62 243.0 472 32.8
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 7.7e-62 242.3 472 32.4
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 5.0e-61 239.6 475 33.3
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-60 238.4 477 32.7
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 9.4e-60 235.3 470 32.8
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 4.0e-58 229.9 470 32.3
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 5.2e-58 229.6 475 33.1
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.2e-57 228.4 472 32.2
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 2.0e-57 227.6 480 31.7
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 3.4e-57 226.9 476 33.0
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 3.4e-57 226.9 476 31.9
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 9.8e-57 225.3 460 31.1
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 9.8e-57 225.3 476 32.1
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 2.2e-56 224.2 475 32.0
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.8e-56 223.8 405 36.0
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 3.7e-56 223.4 475 31.8
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.3e-56 222.2 474 31.6
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.4e-55 221.5 392 35.5
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-54 218.4 460 31.7
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.6e-54 218.0 460 31.5
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.6e-54 218.0 423 34.5
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 2.7e-54 217.2 486 31.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 5.9e-54 216.1 460 31.5
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.8e-53 213.4 423 34.0
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.5e-52 210.7 316 44.3
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 7.2e-52 209.1 203 53.7
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.4e-49 200.3 423 32.2
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 7.5e-49 199.1 422 32.5
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.6e-45 186.0 133 67.7
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.6e-45 186.0 317 38.2
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 8.6e-45 185.7 161 57.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.2e-43 181.8 168 54.8
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 7.5e-41 172.6 324 35.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 9.8e-41 172.2 320 35.9
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.9e-40 169.9 152 57.2
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.1e-39 168.7 124 65.3
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.1e-39 168.7 409 31.5
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.4e-39 168.3 136 63.2
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.4e-39 166.4 140 57.1
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.2e-39 165.6 142 56.3
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.2e-38 165.2 487 28.3
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.7e-38 164.1 142 56.3
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.7e-38 164.1 142 56.3
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-37 161.8 121 63.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 6.6e-37 159.5 139 61.9
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 6.6e-37 159.5 429 29.1
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.5e-36 157.5 142 54.2
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.3e-36 156.8 134 57.5
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.6e-35 154.8 408 28.4
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.2e-35 152.9 315 34.6
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 8.0e-35 152.5 164 50.0
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.8e-33 145.6 142 52.8
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.1e-31 142.1 484 27.3
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.2e-31 140.6 488 26.8
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 9.2e-31 139.0 480 26.9
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 6.0e-30 136.3 392 28.6
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.3e-29 135.2 171 42.1
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 8.6e-29 132.5 448 26.8
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.5e-28 131.0 484 25.2
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 2.8e-27 127.5 122 49.2
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 6.2e-27 126.3 485 25.4
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.5e-22 110.5 194 39.2
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.1e-18 99.0 265 29.4
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.1e-18 97.4 77 59.7
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-16 91.3 262 29.8
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.3e-13 81.3 366 25.4
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 3.9e-13 80.5 132 34.8


User provided reference genes

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