Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 4.8e-131 471.1 222 100.0
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 1.8e-109 399.4 252 77.4
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 2.3e-109 399.1 250 77.2
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 1.3e-107 393.3 250 75.6
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 7.6e-105 384.0 255 71.4
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 7.6e-105 384.0 250 72.8
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 2.2e-104 382.5 251 72.9
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 3.8e-104 381.7 251 70.9
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 8.4e-104 380.6 251 71.7
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 2.5e-103 379.0 251 70.9
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 7.2e-103 377.5 251 71.3
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 7.2e-103 377.5 251 70.1
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 1.2e-102 376.7 250 72.0
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.6e-102 376.3 248 73.0
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 2.1e-102 375.9 251 70.9
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 4.6e-102 374.8 246 72.4
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 6.1e-102 374.4 246 72.0
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 1.3e-101 373.2 252 69.4
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 1.3e-101 373.2 252 71.4
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.3e-101 373.2 250 70.4
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 1.3e-101 373.2 253 69.6
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 2.3e-101 372.5 252 69.8
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 2.3e-101 372.5 252 69.8
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 3.9e-101 371.7 252 69.0
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 5.1e-101 371.3 250 70.0
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 5.1e-101 371.3 252 69.8
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 5.1e-101 371.3 251 71.3
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 6.7e-101 370.9 252 69.0
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 6.7e-101 370.9 251 70.5
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 8.7e-101 370.5 249 71.1
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 8.7e-101 370.5 252 69.4
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 8.7e-101 370.5 252 69.4
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 1.1e-100 370.2 247 70.9
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 1.1e-100 370.2 252 70.2
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 1.1e-100 370.2 252 70.2
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 1.1e-100 370.2 250 68.8
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 1.9e-100 369.4 251 70.1
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 1.9e-100 369.4 252 69.0
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 1.9e-100 369.4 253 68.8
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 1.9e-100 369.4 253 68.8
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 3.3e-100 368.6 250 69.2
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 4.3e-100 368.2 253 68.4
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 4.3e-100 368.2 250 69.2
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 4.3e-100 368.2 249 70.7
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 1.3e-99 366.7 249 70.7
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 1.3e-99 366.7 249 70.7
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 1.6e-99 366.3 249 69.1
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 2.2e-99 365.9 251 69.7
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 3.7e-99 365.2 251 69.3
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 3.7e-99 365.2 249 68.3
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 8.2e-99 364.0 281 63.7
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 1.1e-98 363.6 250 69.6
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.1e-98 363.6 252 67.1
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.4e-98 363.2 252 67.9
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 1.4e-98 363.2 249 70.3
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 1.8e-98 362.8 255 67.5
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 1.8e-98 362.8 252 67.5
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 1.8e-98 362.8 252 67.5
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 2.4e-98 362.5 253 67.2
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 3.1e-98 362.1 251 68.1
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 3.1e-98 362.1 252 67.5
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 3.1e-98 362.1 252 68.3
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 4.1e-98 361.7 252 67.1
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 5.3e-98 361.3 251 68.1
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 6.9e-98 360.9 252 67.5
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 6.9e-98 360.9 252 70.2
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 9.0e-98 360.5 255 67.1
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 1.2e-97 360.1 281 63.0
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 1.2e-97 360.1 252 67.5
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 1.2e-97 360.1 250 68.4
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 1.2e-97 360.1 252 67.1
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.5e-97 359.8 252 67.1
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.5e-97 359.8 250 67.6
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.5e-97 359.8 250 67.6
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 2.0e-97 359.4 250 68.0
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 2.0e-97 359.4 250 68.0
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.0e-97 359.4 252 67.5
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 3.4e-97 358.6 251 67.3
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 4.5e-97 358.2 249 67.9
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 4.5e-97 358.2 253 65.6
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 7.7e-97 357.5 250 67.6
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.0e-96 357.1 239 69.9
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 1.3e-96 356.7 252 65.9
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.3e-96 356.7 251 67.7
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 1.7e-96 356.3 250 67.2
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.8e-96 355.1 248 66.9
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.8e-96 355.1 248 66.9
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 5.0e-96 354.8 252 65.5
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 5.0e-96 354.8 250 67.6
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 1.1e-95 353.6 250 67.2
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 3.2e-95 352.1 253 65.6
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 3.2e-95 352.1 265 63.0
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 5.5e-95 351.3 280 61.1
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 5.5e-95 351.3 252 64.3
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 1.2e-94 350.1 250 66.8
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 2.1e-94 349.4 250 66.0
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 2.1e-94 349.4 253 65.2
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 3.6e-94 348.6 253 67.2
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 7.9e-94 347.4 250 65.2
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 7.9e-94 347.4 251 63.3
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 2.3e-93 345.9 251 66.9
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 2.3e-93 345.9 251 67.3
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 6.7e-93 344.4 251 66.5
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 1.5e-92 343.2 251 66.1
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 3.3e-92 342.0 312 56.7
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 5.7e-92 341.3 251 65.7
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 5.7e-92 341.3 251 65.7
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 5.7e-92 341.3 251 65.7
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 4.8e-91 338.2 249 63.5
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 1.2e-89 333.6 235 66.4
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 1.2e-89 333.6 247 62.3
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 2.6e-89 332.4 230 67.8
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.3e-88 330.1 250 64.4
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 2.2e-88 329.3 225 68.4
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.0e-85 320.5 254 63.0
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.0e-85 320.5 250 61.2
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 8.8e-85 317.4 244 58.2
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 2.2e-83 312.8 248 59.3
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 6.3e-83 311.2 221 66.5
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 4.1e-82 308.5 221 65.2
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 2.0e-81 306.2 249 60.2
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 1.1e-79 300.4 243 57.2
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.8e-77 293.1 248 56.0
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 4.0e-77 292.0 199 69.3
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 2.0e-76 289.7 248 55.2
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 4.4e-76 288.5 224 64.3
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 9.1e-74 280.8 199 67.3
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 8.5e-72 274.2 253 52.2
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 5.5e-71 271.6 215 59.5
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 4.7e-62 241.9 151 73.5
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 5.2e-61 238.4 151 73.5
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 2.8e-46 189.5 179 50.8
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 7.5e-44 181.4 124 71.0
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 9.8e-44 181.0 127 63.8
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 1.4e-42 177.2 141 61.7
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 4.3e-39 165.6 161 54.0
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.8e-37 160.2 133 61.7
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 1.2e-36 157.5 212 43.4
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 1.9e-34 150.2 84 77.4
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.9e-34 150.2 113 60.2
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 7.8e-33 144.8 84 75.0
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-32 143.7 145 46.2
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 1.6e-25 120.6 187 36.4
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 3.6e-22 109.4 57 75.4
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 6.4e-19 98.6 52 84.6
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 2.1e-17 93.6 52 76.9
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 1.3e-11 74.3 45 71.1
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 2.9e-11 73.2 45 68.9
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 8.4e-11 71.6 45 68.9
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 9.3e-10 68.2 44 59.1
Psat2g121200 Pisum sativum HOM05D002775 ORTHO05D003262 4.3e-07 59.3 202 24.3
Medtr7g039510 Medicago truncatula HOM05D002775 ORTHO05D003262 4.8e-06 55.8 197 23.9
Sabra10G0066200 Salix brachista HOM05D002775 ORTHO05D003262 6.2e-06 55.5 200 24.5


User provided reference genes

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