Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 0.0e+00 3251.5 1735 100.0
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 0.0e+00 1725.7 1743 60.5
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 1.4e-283 980.7 1867 40.2
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 3.9e-204 716.8 1853 35.2
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 7.9e-165 586.3 1771 34.5
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 7.9e-157 559.7 1812 32.8
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.6e-149 535.4 1764 33.7
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 4.1e-137 494.2 2010 31.2
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.2e-134 484.6 2019 30.7
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.3e-126 458.0 1796 30.6
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.3e-126 458.0 1986 29.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.8e-124 452.2 1958 29.3
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 4.4e-123 447.6 1966 28.9
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 4.9e-122 444.1 1779 29.3
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.7e-119 435.6 1735 30.0
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 6.8e-116 423.7 1807 29.3
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 8.9e-116 423.3 1901 29.5
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.4e-113 414.1 1833 30.8
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 4.1e-105 387.9 949 37.0
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.9e-102 379.0 1874 29.1
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 3.1e-100 371.7 1913 28.8
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 3.4e-99 368.2 1824 29.0
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.3e-98 366.3 1827 29.6
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.6e-93 349.4 1908 27.8
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 6.0e-88 330.9 1933 28.4
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 2.5e-86 325.5 1916 28.9
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.4e-84 319.7 1939 28.3
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 1.3e-82 313.2 1786 28.3
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.9e-81 309.3 1881 27.2
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 5.4e-81 307.8 1795 27.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.3e-81 307.0 1943 27.3
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.0e-79 302.0 1946 26.9
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.1e-79 301.2 1852 26.3
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.9e-78 299.3 1780 26.9
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.9e-78 299.3 1842 27.6
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.4e-76 293.1 1840 27.7
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 9.9e-75 287.0 2106 26.0
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 3.8e-74 285.0 1781 27.9
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.9e-73 282.7 1788 27.6
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.6e-72 279.6 1977 26.0
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.8e-71 276.2 1889 25.8
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.3e-71 275.8 1807 26.9
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 7.4e-70 270.8 1919 26.6
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 2.1e-69 269.2 1785 25.9
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.7e-66 259.6 1838 26.0
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.2e-66 259.2 2000 26.9
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 4.9e-66 258.1 2051 25.5
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.1e-65 256.9 1845 26.1
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.5e-62 246.5 1736 26.0
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 9.6e-62 243.8 678 34.2
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.3e-61 243.4 864 32.1
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 2.1e-61 242.7 1806 26.5
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 9.0e-60 237.3 1847 26.2
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 2.0e-59 236.1 1818 26.9
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 2.9e-58 232.3 1880 25.7
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 3.2e-57 228.8 1745 25.4
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 4.2e-57 228.4 1768 26.9
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.2e-56 226.9 1784 25.3
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.1e-56 226.1 485 43.1
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 2.1e-56 226.1 1831 26.3
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 2.7e-56 225.7 1794 26.0
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 7.9e-56 224.2 1835 25.3
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.0e-55 223.8 1553 25.0
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 5.1e-55 221.5 1727 25.7
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.2e-53 216.1 1813 26.4
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 4.8e-53 214.9 1767 24.3
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 4.8e-53 214.9 1903 26.2
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.3e-53 214.5 1745 25.7
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.4e-52 212.6 1932 24.0
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 6.9e-52 211.1 1923 24.4
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.9e-52 211.1 1883 25.1
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 3.4e-51 208.8 785 29.9
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.8e-50 205.3 1795 24.7
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.1e-48 199.5 682 33.4
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 6.7e-47 194.5 714 33.1
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 3.7e-45 188.7 490 31.6
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.4e-44 186.8 704 32.7
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.4e-44 186.0 479 40.1
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 5.3e-44 184.9 1848 25.4
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 9.1e-44 184.1 1818 24.6
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.5e-43 183.3 2012 24.8
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 7.7e-43 181.0 692 33.1
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.5e-42 177.9 796 32.0
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 3.2e-41 175.6 1803 25.6
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 4.2e-41 175.3 673 33.6
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 5.5e-41 174.9 1872 24.7
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 1.2e-40 173.7 1799 25.8
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.0e-39 170.6 1553 24.7
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.0e-39 169.1 1813 26.0
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.1e-38 167.2 192 52.1
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.6e-38 166.0 1903 24.3
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 3.3e-38 165.6 1610 24.6
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 7.4e-38 164.5 540 36.1
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.1e-36 160.6 682 31.4
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.4e-36 160.2 1870 23.6
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.1e-36 157.5 622 27.0
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.2e-35 157.1 1872 25.7
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.3e-34 153.7 1988 23.6
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 6.5e-34 151.4 494 31.4
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 4.2e-33 148.7 1823 23.4
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 7.2e-33 147.9 300 35.3
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 2.7e-32 146.0 736 29.6
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.0e-30 139.8 629 26.4
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.6e-30 139.4 256 52.3
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 3.3e-30 139.0 1896 23.8
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 2.2e-29 136.3 1779 24.1
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 1.2e-27 130.6 1872 23.8
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.2e-24 120.6 454 37.2
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.1e-24 119.8 241 34.4
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 8.8e-23 114.4 1974 23.5
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 9.8e-22 110.9 846 27.3
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.8e-21 108.6 71 70.4
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.1e-20 107.5 253 34.4
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.8e-20 106.7 293 33.1
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 1.7e-18 100.1 284 32.0
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 6.5e-18 98.2 508 25.4
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.1e-17 97.4 105 47.6
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.5e-17 97.1 1925 22.5
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.5e-17 96.3 67 74.6
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 5.5e-17 95.1 208 36.1
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 5.5e-17 95.1 101 47.5
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.2e-16 94.0 1814 23.6
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.2e-16 94.0 514 25.5
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 3.6e-16 92.4 169 38.5
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 5.2e-15 88.6 169 37.9
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 9.8e-14 84.3 191 35.6
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.1e-12 80.9 1906 23.5
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.8e-12 80.1 200 32.0
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 1.8e-12 80.1 61 60.7
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 2.4e-12 79.7 627 24.6
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 7.0e-12 78.2 161 33.5
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 3.5e-11 75.9 1895 21.9
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 7.7e-11 74.7 168 35.1
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 7.7e-11 74.7 58 58.6
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.0e-10 74.3 121 38.8
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 2.9e-10 72.8 360 27.2
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 6.6e-10 71.6 57 61.4
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-09 70.9 84 51.2
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.9e-09 70.1 749 21.5
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 9.5e-09 67.8 195 32.3
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 8.0e-08 64.7 106 41.5
PSO063G5346 Papaver somniferum HOM05D004836 ORTHO05D005150 2.3e-07 63.2 175 34.3
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 2.3e-07 63.2 63 47.6
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.9e-07 61.2 200 29.0
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 2.0e-06 60.1 461 29.1
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 3.4e-06 59.3 82 41.5
Mapoly0020s0135 Marchantia polymorpha HOM05D014698 ORTHO05D016532 4.4e-06 58.9 64 48.4


User provided reference genes

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