Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 9.5e-214 746.5 358 100.0
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 5.6e-174 614.4 402 77.6
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 4.2e-169 598.2 437 69.1
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 6.0e-168 594.3 440 68.9
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 1.7e-167 592.8 430 70.2
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 3.1e-164 582.0 440 67.3
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.7e-162 576.2 437 67.0
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 6.4e-162 574.3 436 66.5
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 9.3e-161 570.5 434 66.1
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 9.3e-161 570.5 440 65.5
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 2.1e-160 569.3 440 65.9
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 1.8e-159 566.2 440 64.5
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 2.3e-159 565.8 440 65.0
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 5.1e-159 564.7 439 65.6
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 6.7e-159 564.3 439 64.7
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 8.7e-159 563.9 436 64.2
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 1.1e-158 563.5 440 65.0
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.1e-158 563.5 437 64.8
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.9e-158 562.8 440 64.5
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 1.9e-158 562.8 437 65.2
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 1.9e-158 562.8 437 65.0
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.9e-158 562.8 437 64.8
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 4.3e-158 561.6 437 64.5
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 9.6e-158 560.5 437 63.8
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 1.3e-157 560.1 437 63.8
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.3e-157 560.1 437 63.8
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 1.6e-157 559.7 440 64.1
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 1.6e-157 559.7 437 64.1
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 2.1e-157 559.3 437 63.6
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 2.1e-157 559.3 437 63.8
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 2.1e-157 559.3 437 63.6
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 3.7e-157 558.5 437 64.3
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 6.2e-157 557.8 440 63.4
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 6.2e-157 557.8 437 63.6
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.4e-156 556.6 438 64.6
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 2.4e-156 555.8 437 63.6
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 4.0e-156 555.1 440 64.3
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 4.0e-156 555.1 440 63.2
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 5.3e-156 554.7 433 64.9
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 5.3e-156 554.7 437 64.1
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 5.3e-156 554.7 440 64.1
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 6.9e-156 554.3 437 63.8
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 6.9e-156 554.3 443 62.5
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 9.0e-156 553.9 437 63.8
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 9.0e-156 553.9 437 63.8
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 1.5e-155 553.1 440 63.4
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 1.5e-155 553.1 437 63.4
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 2.0e-155 552.7 433 64.4
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 2.0e-155 552.7 437 63.6
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.6e-155 552.4 437 63.4
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 3.4e-155 552.0 448 62.9
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 3.4e-155 552.0 440 63.0
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 7.6e-155 550.8 437 63.8
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 7.6e-155 550.8 437 63.6
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 7.6e-155 550.8 437 63.6
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 9.9e-155 550.4 436 63.8
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.3e-154 550.1 440 63.2
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 2.2e-154 549.3 437 62.9
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.9e-154 548.9 437 63.2
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 3.8e-154 548.5 437 64.1
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 4.9e-154 548.1 440 63.0
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 4.9e-154 548.1 440 63.2
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 6.4e-154 547.7 461 62.0
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 6.4e-154 547.7 437 63.6
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 8.4e-154 547.4 437 63.2
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 1.1e-153 547.0 437 62.7
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.1e-153 547.0 435 62.8
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 1.9e-153 546.2 438 62.6
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 4.2e-153 545.0 440 62.5
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 4.2e-153 545.0 436 63.3
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 9.3e-153 543.9 436 61.0
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 1.2e-152 543.5 436 63.3
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 2.1e-152 542.7 437 62.0
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 2.7e-152 542.3 433 64.2
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 2.7e-152 542.3 480 58.5
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 6.0e-152 541.2 441 63.0
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 7.9e-152 540.8 436 62.6
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 7.9e-152 540.8 441 63.0
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 7.9e-152 540.8 480 58.5
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 1.3e-151 540.0 436 62.6
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 2.3e-151 539.3 440 61.6
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 3.0e-151 538.9 444 61.3
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 6.7e-151 537.7 434 63.1
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 8.7e-151 537.3 437 61.1
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 1.1e-150 537.0 469 58.0
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 1.5e-150 536.6 419 64.4
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 7.4e-150 534.3 477 58.5
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 9.6e-150 533.9 435 61.8
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 9.6e-150 533.9 469 57.6
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.1e-148 530.4 437 60.9
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 2.0e-147 526.2 436 60.3
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 3.4e-147 525.4 436 61.0
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 4.5e-147 525.0 415 66.3
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 5.8e-147 524.6 469 56.9
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 5.5e-145 518.1 436 60.3
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 9.3e-145 517.3 438 59.8
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 1.2e-144 516.9 522 53.4
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 2.1e-144 516.2 437 60.4
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 2.1e-144 516.2 436 60.1
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 3.5e-144 515.4 438 59.8
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 1.0e-143 513.8 437 60.9
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 1.0e-143 513.8 437 59.7
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 3.9e-143 511.9 406 62.6
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 5.1e-143 511.5 558 50.9
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 1.9e-142 509.6 411 62.0
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 1.9e-142 509.6 411 62.0
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.5e-142 509.2 399 65.4
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 3.3e-142 508.8 446 58.1
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 5.7e-142 508.1 433 58.0
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 9.7e-142 507.3 396 65.2
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.7e-141 505.4 398 63.8
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 4.8e-141 505.0 409 59.9
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 6.9e-140 501.1 397 62.7
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.6e-139 499.2 393 65.6
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 5.9e-139 498.0 437 59.3
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 7.6e-139 497.7 399 62.4
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 3.8e-138 495.4 432 60.2
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 5.0e-138 495.0 393 64.6
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 6.5e-138 494.6 394 63.5
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 8.5e-138 494.2 409 59.2
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.6e-136 488.4 420 60.0
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 1.1e-134 483.8 359 65.7
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.8e-133 479.2 398 59.5
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 4.1e-132 475.3 382 62.3
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 9.1e-132 474.2 380 62.9
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 4.5e-131 471.9 398 61.3
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 4.5e-131 471.9 398 61.3
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 1.3e-130 470.3 398 61.1
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 2.9e-130 469.2 397 60.7
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 2.9e-130 469.2 397 61.2
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 1.6e-128 463.4 357 65.8
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 2.7e-128 462.6 372 63.4
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 2.2e-125 453.0 368 64.1
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 1.7e-122 443.4 367 60.8
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 2.5e-121 439.5 398 59.5
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 2.7e-120 436.0 416 56.2
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 1.0e-119 434.1 439 52.8
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.0e-118 429.9 366 60.4
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 5.7e-118 428.3 476 50.8
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 9.7e-118 427.6 367 59.7
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 2.8e-117 426.0 405 53.1
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.7e-114 416.8 378 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 1.6e-112 410.2 355 57.7
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 6.7e-111 404.8 302 67.2
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 4.4e-110 402.1 411 54.0
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 5.7e-110 401.7 443 48.1
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.6e-107 393.7 372 55.9
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.8e-103 380.2 327 58.7
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 7.5e-94 348.2 340 52.9
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 9.2e-92 341.3 431 46.9
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 6.8e-87 325.1 342 52.6
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 1.0e-82 311.2 240 65.4
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.1e-79 301.2 232 63.4
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 8.9e-79 298.1 240 63.8
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 4.9e-77 292.4 158 82.9
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 3.0e-74 283.1 272 55.9
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 1.6e-67 260.8 204 63.2
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 1.5e-57 227.6 151 70.2
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 1.2e-56 224.6 148 71.6
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 2.1e-56 223.8 344 37.2
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 1.7e-53 214.2 179 62.6
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 8.7e-50 201.8 154 64.9
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 2.8e-48 196.8 180 58.3
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 8.7e-42 175.3 130 70.0
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 3.7e-40 169.9 197 47.2
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.5e-38 164.5 100 76.0
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 5.8e-38 162.5 99 78.8
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 3.9e-34 149.8 128 60.2
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.3e-33 146.7 102 65.7
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 9.0e-31 138.7 84 73.8
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.2e-30 138.3 94 71.3
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 7.1e-28 129.0 104 62.5
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 6.3e-24 115.9 103 60.2
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 4.1e-23 113.2 72 75.0
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 5.3e-23 112.8 81 69.1
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 6.9e-23 112.5 72 73.6
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 1.2e-22 111.7 102 56.9
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 2.0e-22 110.9 72 72.2
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 2.0e-22 110.9 102 58.8
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 2.9e-21 107.1 71 70.4
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 2.9e-21 107.1 71 70.4
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 3.8e-21 106.7 72 72.2
SHI16230 Sapria himalayana HOM05D000105 ORTHO05D000023 3.9e-10 70.1 126 38.9
C03p53560 Brassica napus HOM05D003547 ORTHO05D042659 1.4e-07 61.6 81 45.7
BolC3t17616H Brassica oleracea HOM05D003547 ORTHO05D042659 1.4e-07 61.6 81 45.7


User provided reference genes

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