Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1828.9 903 100.0
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1399.8 837 81.2
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1387.1 838 82.3
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1360.5 837 80.3
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1303.5 835 75.0
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1283.9 836 73.8
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1283.5 847 73.3
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1283.5 836 73.7
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1281.5 836 74.4
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1281.5 839 73.3
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1280.8 859 71.1
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 835 73.8
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1274.6 838 73.4
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1272.7 836 73.9
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1267.7 834 73.3
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1267.7 842 72.4
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1265.0 834 72.3
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1261.1 841 72.3
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1260.0 838 72.4
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1258.8 833 72.9
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1253.0 838 72.3
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1251.5 840 71.5
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1251.1 841 71.9
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1250.3 827 73.5
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1249.2 838 72.2
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1248.0 838 72.7
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1247.6 840 72.4
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1246.1 841 72.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1245.7 841 71.8
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1245.3 847 71.7
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1244.2 841 71.7
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1243.0 842 70.7
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1241.9 841 71.6
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1241.9 847 71.5
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1236.9 945 66.9
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1235.7 841 70.9
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1235.7 847 71.0
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1235.3 834 71.5
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1234.2 835 71.9
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1233.0 838 71.5
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1232.2 834 71.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1230.3 844 71.1
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1227.2 844 70.9
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1225.3 839 70.6
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1223.8 840 69.6
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1223.8 838 70.6
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1223.4 842 70.0
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1218.0 835 70.4
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1216.1 840 70.5
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1214.5 837 69.5
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1212.2 844 69.7
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1210.3 841 69.8
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1209.5 845 69.6
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1208.7 844 70.0
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1208.0 964 62.3
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1205.7 840 70.1
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1204.5 845 69.2
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1199.1 839 68.4
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1196.4 841 69.4
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1196.0 839 69.6
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1196.0 837 69.8
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1187.6 842 68.8
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1184.9 850 68.1
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1182.5 842 68.8
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1181.8 838 68.5
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1180.2 881 66.2
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1178.7 847 68.2
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1175.6 835 69.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1174.1 857 66.3
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1172.9 838 68.1
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1164.1 772 74.1
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1154.0 862 67.9
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1146.3 840 65.8
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1144.4 836 65.7
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1143.3 841 65.6
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 842 65.7
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1137.9 869 66.7
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1136.7 840 66.0
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1136.3 840 66.9
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 852 65.4
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1133.6 842 65.4
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1133.2 839 65.7
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1133.2 839 65.7
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1128.2 840 65.4
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1123.2 837 65.1
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1120.1 837 65.1
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1119.0 838 65.2
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1116.7 842 65.3
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1114.8 839 64.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1112.1 732 72.8
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1107.8 846 64.8
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1100.5 838 64.1
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1100.1 837 63.2
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1079.7 859 61.2
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 1.0e-309 1066.6 760 68.2
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 1.1e-306 1056.6 833 61.6
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.3e-288 995.7 842 59.0
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 2.9e-283 978.8 669 70.7
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 5.2e-269 931.4 618 72.5
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.8e-254 882.5 583 72.0
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.4e-253 879.4 842 54.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.5e-244 850.1 894 50.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.5e-244 850.1 858 50.2
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 5.4e-242 841.6 863 51.7
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 7.4e-239 831.2 839 53.5
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.6e-169 600.9 469 63.3
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.7e-164 583.6 400 68.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.0e-147 526.9 402 65.7
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.0e-139 500.4 360 65.6
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 5.8e-135 486.1 355 65.1
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.3e-122 443.7 264 78.4
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 1.2e-100 372.1 872 32.1
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 2.1e-100 371.3 750 36.1
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 4.1e-96 357.1 499 44.7
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.0e-94 352.4 236 70.8
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.5e-93 347.8 302 62.3
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.0e-90 338.2 213 76.1
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.6e-90 337.8 300 57.0
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 3.3e-90 337.4 1182 26.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.2e-89 334.7 192 79.2
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.7e-89 334.0 266 61.3
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.8e-89 333.6 1019 28.6
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.8e-89 333.6 196 76.5
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.6e-76 290.8 245 61.6
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 5.7e-58 230.3 564 31.4
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 3.9e-46 191.0 195 49.7
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.7e-41 175.6 161 55.9
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 4.1e-40 171.0 126 64.3
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 1.9e-37 162.2 525 27.2
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 1.9e-37 162.2 525 27.2
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.3e-35 155.2 116 67.2
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.9e-33 148.3 97 74.2
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.6e-28 132.5 84 76.2
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.4e-26 124.8 95 65.3
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 8.4e-25 120.2 192 39.6
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 1.2e-23 116.3 96 60.4
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.7e-23 115.2 94 63.8
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.7e-22 112.5 59 79.7
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.1e-20 103.6 64 73.4
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.1e-19 103.2 66 77.3
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.4e-19 102.1 111 52.3
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 7.6e-18 97.1 153 38.6
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 3.8e-17 94.7 112 48.2
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.2e-15 89.7 53 77.4
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 3.0e-14 85.1 100 43.0
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 2.5e-13 82.0 92 46.7
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.1e-12 79.0 59 50.8
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 2.7e-07 62.0 82 45.1
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 4.6e-07 61.2 215 25.6
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 1.8e-06 59.3 374 21.9
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 3.9e-06 58.2 374 20.9
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 3.9e-06 58.2 60 46.7
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 6.7e-06 57.4 374 21.1
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 6.7e-06 57.4 250 24.8


User provided reference genes

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