Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold170G38776 Striga asiatica HOM05D002372 ORTHO05D003449 5.9e-100 367.5 178 100.0
SGA_v2.0_scaffold225G43030 Striga asiatica HOM05D002372 ORTHO05D002592 2.9e-22 109.4 126 50.8
ATR0208G008 Amborella trichopoda HOM05D002372 ORTHO05D002592 5.0e-22 108.6 126 49.2
MSTRG.16683 Avicennia marina HOM05D002372 ORTHO05D002592 6.5e-22 108.2 126 50.0
SGA_v2.0_scaffold32G13002 Striga asiatica HOM05D002372 ORTHO05D002592 1.4e-21 107.1 126 49.2
Solyc01g107160.3 Solanum lycopersicum HOM05D002372 ORTHO05D002592 2.5e-21 106.3 126 49.2
Sopen01g049420 Solanum pennellii HOM05D002372 ORTHO05D002592 2.5e-21 106.3 126 49.2
PGSC0003DMG400025750 Solanum tuberosum HOM05D002372 ORTHO05D002592 2.5e-21 106.3 126 49.2
Nn1g04590 Nelumbo nucifera HOM05D002372 ORTHO05D002592 4.2e-21 105.5 126 48.4
Nitab4.5_0012134g0010 Nicotiana tabacum HOM05D002372 ORTHO05D002592 4.2e-21 105.5 126 49.2
Duzib052G0254 Durio zibethinus HOM05D002372 ORTHO05D002592 9.4e-21 104.4 126 48.4
Thecc.02G115700 Theobroma cacao HOM05D002372 ORTHO05D002592 9.4e-21 104.4 126 48.4
COL.COLO4_32527 Corchorus olitorius HOM05D002372 ORTHO05D002592 1.2e-20 104.0 126 47.6
ECA240G3850 Erigeron canadensis HOM05D002372 ORTHO05D002592 1.2e-20 104.0 126 46.8
Nitab4.5_0001105g0080 Nicotiana tabacum HOM05D002372 ORTHO05D002592 1.2e-20 104.0 126 48.4
Peaxi162Scf00016g02810 Petunia axillaris HOM05D002372 ORTHO05D002592 1.2e-20 104.0 126 46.8
SalBow3G2017 Salvia bowleyana HOM05D002372 ORTHO05D002592 1.2e-20 104.0 126 46.0
MSTRG.5319 Avicennia marina HOM05D002372 ORTHO05D002592 1.6e-20 103.6 126 46.8
Cpa.g.sc106.59 Carica papaya HOM05D002372 ORTHO05D002592 1.6e-20 103.6 126 46.8
CSS0027801 Camellia sinensis var. sinensis HOM05D002372 ORTHO05D002592 2.1e-20 103.2 126 47.6
CiPaw.05G016800 Carya illinoinensis HOM05D002372 ORTHO05D002592 2.1e-20 103.2 126 46.8
CiPaw.06G166200 Carya illinoinensis HOM05D002372 ORTHO05D002592 2.1e-20 103.2 126 46.8
ClCG10G010490 Citrullus lanatus HOM05D002372 ORTHO05D002592 2.1e-20 103.2 126 47.6
Duzib132G0475 Durio zibethinus HOM05D002372 ORTHO05D002592 2.7e-20 102.8 126 47.6
Eucgr.I01072 Eucalyptus grandis HOM05D002372 ORTHO05D002592 2.7e-20 102.8 126 46.0
Oeu021364.1 Olea europaea HOM05D002372 ORTHO05D002592 2.7e-20 102.8 126 46.8
Ciclev10028761m.g Citrus clementina HOM05D002372 ORTHO05D002592 3.6e-20 102.4 126 46.8
Cc02_g19760 Coffea canephora HOM05D002372 ORTHO05D002592 3.6e-20 102.4 126 46.8
Dinv15800 Davidia involucrata HOM05D002372 ORTHO05D002592 3.6e-20 102.4 126 47.6
Gohir.A13G046300 Gossypium hirsutum HOM05D002372 ORTHO05D002592 3.6e-20 102.4 126 47.6
Gorai.013G050200 Gossypium raimondii HOM05D002372 ORTHO05D002592 3.6e-20 102.4 126 47.6
Manes.10G079800 Manihot esculenta HOM05D002372 ORTHO05D002592 3.6e-20 102.4 126 47.6
Potri.001G295100 Populus trichocarpa HOM05D002372 ORTHO05D002592 3.6e-20 102.4 126 47.6
Dinv42231 Davidia involucrata HOM05D002372 ORTHO05D002592 4.7e-20 102.1 126 46.8
CSS0031062 Camellia sinensis var. sinensis HOM05D002372 ORTHO05D002592 6.1e-20 101.7 126 47.6
Cfa004637 Carpinus fangiana HOM05D002372 ORTHO05D002592 6.1e-20 101.7 126 46.8
MELO3C017995.2 Cucumis melo HOM05D002372 ORTHO05D002592 6.1e-20 101.7 126 46.8
Gohir.A03G183200 Gossypium hirsutum HOM05D002372 ORTHO05D002592 6.1e-20 101.7 126 47.6
Gohir.D13G045401 Gossypium hirsutum HOM05D002372 ORTHO05D002592 6.1e-20 101.7 126 46.8
MD05G1098500 Malus domestica HOM05D002372 ORTHO05D002592 6.1e-20 101.7 126 47.6
Sabra09G0069100 Salix brachista HOM05D002372 ORTHO05D002592 6.1e-20 101.7 126 46.8
Potri.009G089200 Populus trichocarpa HOM05D002372 ORTHO05D002592 7.9e-20 101.3 126 46.0
PGR120G0005 Punica granatum HOM05D002372 ORTHO05D002592 7.9e-20 101.3 126 45.2
PGR142G2817 Punica granatum HOM05D002372 ORTHO05D002592 7.9e-20 101.3 126 45.2
CANSAT25G2730 Cannabis sativa HOM05D002372 ORTHO05D002592 1.0e-19 100.9 126 46.0
CsaV3_4G000390 Cucumis sativus L. HOM05D002372 ORTHO05D002592 1.0e-19 100.9 126 46.8
Os03g0448600 Oryza sativa ssp. japonica HOM05D002372 ORTHO05D002592 1.0e-19 100.9 126 44.4
Hund12570 Selenicereus undatus HOM05D002372 ORTHO05D002592 1.0e-19 100.9 126 47.6
Atru.chr5.2375 Acer truncatum HOM05D002372 ORTHO05D002592 1.4e-19 100.5 126 46.8
Sed0011895 Sechium edule HOM05D002372 ORTHO05D002592 1.4e-19 100.5 126 46.0
TAR628G1237 Trochodendron aralioides HOM05D002372 ORTHO05D002592 1.4e-19 100.5 126 46.0
VMungo0720G0450 Vigna mungo HOM05D002372 ORTHO05D002592 1.4e-19 100.5 126 46.0
Gohir.D02G204800 Gossypium hirsutum HOM05D002372 ORTHO05D002592 1.8e-19 100.1 126 46.8
Phvul.007G044000 Phaseolus vulgaris HOM05D002372 ORTHO05D002592 1.8e-19 100.1 126 46.0
Sc18g0003480 Simmondsia chinensis HOM05D002372 ORTHO05D002592 1.8e-19 100.1 126 46.8
Ah.09g231880 Amaranthus hybridus HOM05D002372 ORTHO05D002592 2.3e-19 99.8 126 45.2
Migut.N01143 Erythranthe guttata HOM05D002372 ORTHO05D002592 2.3e-19 99.8 126 45.2
MD10G1104300 Malus domestica HOM05D002372 ORTHO05D002592 2.3e-19 99.8 126 46.8
EL10Ac8g19381 Beta vulgaris HOM05D002372 ORTHO05D002592 3.0e-19 99.4 126 46.0
Glyma.20G133400 Glycine max HOM05D002372 ORTHO05D002592 3.0e-19 99.4 126 46.0
Phvul.007G044700 Phaseolus vulgaris HOM05D002372 ORTHO05D002592 3.0e-19 99.4 126 45.2
Prupe.8G143300 Prunus persica HOM05D002372 ORTHO05D002592 3.0e-19 99.4 126 46.0
QL11p030894 Quercus lobata HOM05D002372 ORTHO05D002592 5.1e-19 98.6 126 46.0
Actinidia34365 Actinidia chinensis HOM05D002372 ORTHO05D002592 6.7e-19 98.2 126 46.0
Gorai.005G232100 Gossypium raimondii HOM05D002372 ORTHO05D002592 6.7e-19 98.2 126 46.0
Psat4g227840 Pisum sativum HOM05D002372 ORTHO05D002592 6.7e-19 98.2 126 45.2
TWI14G0004 Tripterygium wilfordii HOM05D002372 ORTHO05D002592 6.7e-19 98.2 126 45.2
TWI23G1219 Tripterygium wilfordii HOM05D002372 ORTHO05D002592 6.7e-19 98.2 126 45.2
TAR381G0570 Trochodendron aralioides HOM05D002372 ORTHO05D002592 6.7e-19 98.2 127 45.7
TAR625G0713 Trochodendron aralioides HOM05D002372 ORTHO05D002592 6.7e-19 98.2 126 45.2
CDE01G0365 Ceratophyllum demersum HOM05D002372 ORTHO05D002592 8.8e-19 97.8 126 44.4
Glyma.20G132800 Glycine max HOM05D002372 ORTHO05D002592 8.8e-19 97.8 126 44.4
Lsat_1_v5_gn_7_85260 Lactuca sativa HOM05D002372 ORTHO05D002592 8.8e-19 97.8 126 44.4
Lj1g0013878 Lotus japonicus HOM05D002372 ORTHO05D002592 8.8e-19 97.8 126 44.4
VMungo0720G2618 Vigna mungo HOM05D002372 ORTHO05D002592 8.8e-19 97.8 126 44.4
Ca_24354_v3 Cicer arietinum L. HOM05D002372 ORTHO05D002592 1.1e-18 97.4 126 45.2
ECA236G1515 Erigeron canadensis HOM05D002372 ORTHO05D002592 1.1e-18 97.4 126 45.2
Glyma.10G258300 Glycine max HOM05D002372 ORTHO05D002592 1.1e-18 97.4 126 44.4
Lsat_1_v5_gn_9_111820 Lactuca sativa HOM05D002372 ORTHO05D002592 1.1e-18 97.4 127 44.1
TPR.G17616 Trifolium pratense HOM05D002372 ORTHO05D002592 1.1e-18 97.4 126 43.7
GSVIVG01037848001 Vitis vinifera HOM05D002372 ORTHO05D002592 1.1e-18 97.4 126 45.2
Migut.B00441 Erythranthe guttata HOM05D002372 ORTHO05D002592 2.6e-18 96.3 126 44.4
HPP92_009535 Vanilla planifolia HOM05D002372 ORTHO05D002592 2.6e-18 96.3 126 44.4
Aqoxy5G00888 Aquilegia oxysepala HOM05D002372 ORTHO05D002592 3.3e-18 95.9 126 43.7
Duzib248G1619 Durio zibethinus HOM05D002372 ORTHO05D002592 3.3e-18 95.9 126 45.2
FAN15G2929 Fragaria x ananassa HOM05D002372 ORTHO05D002592 3.3e-18 95.9 126 43.7
HanXRQChr03g0069911 Helianthus annuus HOM05D002372 ORTHO05D002592 3.3e-18 95.9 126 44.4
MBI16_g22909_MAGBIO Magnolia biondii HOM05D002372 ORTHO05D002592 3.3e-18 95.9 126 42.9
MBI16_g31592_MAGBIO Magnolia biondii HOM05D002372 ORTHO05D002592 3.3e-18 95.9 126 42.9
Nn2g15747 Nelumbo nucifera HOM05D002372 ORTHO05D002592 3.3e-18 95.9 126 45.2
HPP92_009546 Vanilla planifolia HOM05D002372 ORTHO05D002592 3.3e-18 95.9 126 43.7
FvH4_2g04170 Fragaria vesca HOM05D002372 ORTHO05D002592 4.4e-18 95.5 126 43.7
FAN20G2817 Fragaria x ananassa HOM05D002372 ORTHO05D002592 4.4e-18 95.5 126 43.7
FAN24G0362 Fragaria x ananassa HOM05D002372 ORTHO05D002592 4.4e-18 95.5 126 43.7
FAN27G2015 Fragaria x ananassa HOM05D002372 ORTHO05D002592 4.4e-18 95.5 126 43.7
RcHm_v2.0_Chr6g0253521 Rosa chinensis HOM05D002372 ORTHO05D002592 4.4e-18 95.5 126 43.7
Medtr5g005120 Medicago truncatula HOM05D002372 ORTHO05D002592 5.7e-18 95.1 126 43.7
AUR62034087 Chenopodium quinoa HOM05D002372 ORTHO05D002592 7.4e-18 94.7 126 43.7
Pp3c12_14410 Physcomitrium patens HOM05D002372 ORTHO05D002592 7.4e-18 94.7 121 43.8
vmacro01968 Vaccinium macrocarpon HOM05D002372 ORTHO05D002592 9.7e-18 94.4 126 44.4
Aqoxy6G02690 Aquilegia oxysepala HOM05D002372 ORTHO05D002592 1.3e-17 94.0 126 42.9
Oeu037278.2 Olea europaea HOM05D002372 ORTHO05D002592 1.3e-17 94.0 140 42.9
THA.LOC104815226 Tarenaya hassleriana HOM05D002372 ORTHO05D002592 1.3e-17 94.0 126 42.9
arahy.Tifrunner.gnm1.ann1.4F9CQB Arachis hypogaea HOM05D002372 ORTHO05D002592 1.7e-17 93.6 126 42.9
THA.LOC104825383 Tarenaya hassleriana HOM05D002372 ORTHO05D002592 1.7e-17 93.6 126 42.9
arahy.Tifrunner.gnm1.ann1.M9B1UW Arachis hypogaea HOM05D002372 ORTHO05D002592 2.8e-17 92.8 126 42.9
Mapoly0036s0153 Marchantia polymorpha HOM05D002372 ORTHO05D002592 2.8e-17 92.8 121 42.1
Rhsim11G0153700 Rhododendron simsii HOM05D002372 ORTHO05D002592 3.7e-17 92.4 126 43.7
RhsimUnG0124900 Rhododendron simsii HOM05D002372 ORTHO05D002592 3.7e-17 92.4 126 43.7
Sed0014703 Sechium edule HOM05D002372 ORTHO05D002592 3.7e-17 92.4 126 42.9
Lalb_Chr05g0210771 Lupinus albus HOM05D002372 ORTHO05D002592 4.8e-17 92.0 126 42.9
PSO017G4125 Papaver somniferum HOM05D002372 ORTHO05D002592 6.3e-17 91.7 126 42.1
PSO170G0394 Papaver somniferum HOM05D002372 ORTHO05D002592 8.2e-17 91.3 126 42.1
SMO116G0292 Selaginella moellendorffii HOM05D002372 ORTHO05D002592 8.2e-17 91.3 125 44.8
DCAR_003608 Daucus carota HOM05D002372 ORTHO05D002592 2.4e-16 89.7 126 41.3
Pp3c10_19320 Physcomitrium patens HOM05D002372 ORTHO05D002592 5.3e-16 88.6 121 42.1
A08p03470 Brassica napus HOM05D002372 ORTHO05D002592 9.1e-16 87.8 126 40.5
BraA08t32378Z Brassica rapa HOM05D002372 ORTHO05D002592 9.1e-16 87.8 126 40.5
Lj5C218T18 Lonicera japonica HOM05D002372 ORTHO05D002592 9.1e-16 87.8 166 36.1
Carub.0003s1943 Capsella rubella HOM05D002372 ORTHO05D002592 1.2e-15 87.4 126 40.5
Sp3g17630 Schrenkiella parvula HOM05D002372 ORTHO05D002592 1.5e-15 87.0 126 40.5
CARHR095040 Cardamine hirsuta HOM05D002372 ORTHO05D002592 2.0e-15 86.7 126 40.5
BcaB04g20692 Brassica carinata HOM05D002372 ORTHO05D002592 2.6e-15 86.3 126 38.9
BcaC09g48924 Brassica carinata HOM05D002372 ORTHO05D002592 2.6e-15 86.3 126 38.9
A01p35090 Brassica napus HOM05D002372 ORTHO05D002592 2.6e-15 86.3 126 38.9
C01p44520 Brassica napus HOM05D002372 ORTHO05D002592 2.6e-15 86.3 126 38.9
BolC1t04418H Brassica oleracea HOM05D002372 ORTHO05D002592 2.6e-15 86.3 126 38.9
BraA01t03591Z Brassica rapa HOM05D002372 ORTHO05D002592 2.6e-15 86.3 126 38.9
AT3G19590 Arabidopsis thaliana HOM05D002372 ORTHO05D002592 5.9e-15 85.1 126 38.9
CBR_g50927 Chara braunii HOM05D002372 ORTHO05D002592 7.7e-15 84.7 125 40.0
AL3G33020 Arabidopsis lyrata HOM05D002372 ORTHO05D002592 1.0e-14 84.3 126 38.9
Carub.0001s3912 Capsella rubella HOM05D002372 ORTHO05D002592 1.0e-14 84.3 126 38.9
TPR.G8288 Trifolium pratense HOM05D002372 ORTHO05D002592 1.7e-14 83.6 135 38.5
DCAR_029120 Daucus carota HOM05D002372 ORTHO05D002592 2.2e-14 83.2 126 37.3
Sabra16G0184500 Salix brachista HOM05D002372 ORTHO05D002592 2.9e-14 82.8 68 61.8
Sp1g36790 Schrenkiella parvula HOM05D002372 ORTHO05D002592 2.9e-14 82.8 126 38.1
C03p89380 Brassica napus HOM05D002372 ORTHO05D002592 5.0e-14 82.0 127 39.4
BolC3t21252H Brassica oleracea HOM05D002372 ORTHO05D002592 5.0e-14 82.0 127 39.4
Thhalv10011632m.g Eutrema salsugineum HOM05D002372 ORTHO05D002592 8.5e-14 81.3 126 38.9
AL1G57460 Arabidopsis lyrata HOM05D002372 ORTHO05D002592 1.4e-13 80.5 126 37.3
AT1G49910 Arabidopsis thaliana HOM05D002372 ORTHO05D002592 1.4e-13 80.5 126 37.3
AagrBONN_evm.TU.Sc2ySwM_362.2647 Anthoceros agrestis HOM05D002372 ORTHO05D002592 3.2e-13 79.3 125 38.4
CBR_g633 Chara braunii HOM05D002372 ORTHO05D002592 3.2e-13 79.3 124 39.5
Aa31LG10G4190 Aethionema arabicum HOM05D002372 ORTHO05D002592 1.2e-12 77.4 89 44.9
PSO541G4953 Papaver somniferum HOM05D002372 ORTHO05D002592 1.6e-12 77.0 89 42.7
PSO675G5028 Papaver somniferum HOM05D002372 ORTHO05D002592 1.6e-12 77.0 89 42.7
Os07g0588500 Oryza sativa ssp. japonica HOM05D002372 ORTHO05D002592 3.6e-12 75.9 127 37.0
FAN07G0641 Fragaria x ananassa HOM05D002372 ORTHO05D002592 6.1e-12 75.1 146 37.0
FAN20G1170 Fragaria x ananassa HOM05D002372 ORTHO05D002592 1.8e-11 73.6 156 30.8
Pp3c11_23580 Physcomitrium patens HOM05D002372 ORTHO05D002592 2.3e-11 73.2 118 34.7
Haze_10233 Corylus avellana HOM05D002372 ORTHO05D002592 2.0e-10 70.1 43 72.1
Lsat_1_v5_gn_8_136161 Lactuca sativa HOM05D002372 ORTHO05D002592 7.4e-10 68.2 78 44.9
CAN.G135.60 Capsicum annuum HOM05D002372 ORTHO05D002592 2.8e-09 66.2 94 41.5
SGA_v2.0_scaffold1G00320 Striga asiatica HOM05D003189 ORTHO05D003449 2.8e-09 66.2 93 43.0
SEGI_04620 Sequoiadendron giganteum HOM05D002372 ORTHO05D002592 4.8e-09 65.5 43 62.8
Pp3c7_2520 Physcomitrium patens HOM05D002372 ORTHO05D002592 1.6e-07 60.5 164 29.9
Zm00001eb011600 Zea mays HOM05D002372 ORTHO05D002592 1.0e-06 57.8 50 52.0
Hma1.2p1_1023F.1_g248830 Hydrangea macrophylla HOM05D002372 ORTHO05D002592 1.3e-06 57.4 33 75.8


User provided reference genes

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