Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07877 Striga asiatica HOM05D000998 ORTHO05D399286 1.3e-120 436.4 225 100.0
Ciclev10032628m.g Citrus clementina HOM05D000998 ORTHO05D000806 1.6e-12 77.4 39 92.3
CAN.G184.76 Capsicum annuum HOM05D000998 ORTHO05D000806 3.5e-12 76.3 37 94.6
Solyc05g009950.3 Solanum lycopersicum HOM05D000998 ORTHO05D000806 3.5e-12 76.3 37 94.6
Sopen05g005760 Solanum pennellii HOM05D000998 ORTHO05D000806 3.5e-12 76.3 37 94.6
PGSC0003DMG400000803 Solanum tuberosum HOM05D000998 ORTHO05D000806 3.5e-12 76.3 37 94.6
Aqoxy3G03881 Aquilegia oxysepala HOM05D000998 ORTHO05D000806 7.7e-12 75.1 38 86.8
Cfa018645 Carpinus fangiana HOM05D000998 ORTHO05D000806 7.7e-12 75.1 37 97.3
Haze_17424 Corylus avellana HOM05D000998 ORTHO05D000806 7.7e-12 75.1 45 84.4
FvH4_4g28220 Fragaria vesca HOM05D000998 ORTHO05D000806 1.0e-11 74.7 37 94.6
FAN07G2313 Fragaria x ananassa HOM05D000998 ORTHO05D000806 1.0e-11 74.7 37 94.6
FAN12G0458 Fragaria x ananassa HOM05D000998 ORTHO05D000806 1.0e-11 74.7 37 94.6
FAN17G1278 Fragaria x ananassa HOM05D000998 ORTHO05D000806 1.0e-11 74.7 37 94.6
FAN22G0956 Fragaria x ananassa HOM05D000998 ORTHO05D000806 1.0e-11 74.7 37 94.6
Nn4g23694 Nelumbo nucifera HOM05D000998 ORTHO05D000806 1.0e-11 74.7 37 94.6
COL.COLO4_07857 Corchorus olitorius HOM05D000998 ORTHO05D000806 1.3e-11 74.3 39 87.2
Gohir.D12G174500 Gossypium hirsutum HOM05D000998 ORTHO05D000806 1.3e-11 74.3 43 81.4
Gorai.008G187200 Gossypium raimondii HOM05D000998 ORTHO05D000806 1.3e-11 74.3 43 81.4
Peaxi162Scf00367g00727 Petunia axillaris HOM05D000998 ORTHO05D000806 1.3e-11 74.3 39 87.2
CDE07G0105 Ceratophyllum demersum HOM05D000998 ORTHO05D000806 1.7e-11 73.9 36 94.4
HanXRQChr17g0551321 Helianthus annuus HOM05D000998 ORTHO05D000806 1.7e-11 73.9 45 82.2
Thecc.02G362700 Theobroma cacao HOM05D000998 ORTHO05D000806 1.7e-11 73.9 39 84.6
Eucgr.G02359 Eucalyptus grandis HOM05D000998 ORTHO05D000806 2.2e-11 73.6 39 87.2
Hma1.2p1_0406F.1_g145960 Hydrangea macrophylla HOM05D000998 ORTHO05D000806 2.2e-11 73.6 39 84.6
Lsat_1_v5_gn_3_57420 Lactuca sativa HOM05D000998 ORTHO05D000806 2.2e-11 73.6 39 87.2
MD13G1048100 Malus domestica HOM05D000998 ORTHO05D000806 2.2e-11 73.6 37 91.9
QL01p000992 Quercus lobata HOM05D000998 ORTHO05D000806 2.2e-11 73.6 37 91.9
RcHm_v2.0_Chr4g0436011 Rosa chinensis HOM05D000998 ORTHO05D000806 2.2e-11 73.6 45 84.4
DCAR_007222 Daucus carota HOM05D000998 ORTHO05D000806 2.9e-11 73.2 43 88.4
PGR119G2464 Punica granatum HOM05D000998 ORTHO05D000806 2.9e-11 73.2 36 91.7
Potri.010G131100 Populus trichocarpa HOM05D000998 ORTHO05D000806 3.8e-11 72.8 46 76.1
SalBow8G1299 Salvia bowleyana HOM05D000998 ORTHO05D000806 3.8e-11 72.8 36 94.4
Prupe.1G304000 Prunus persica HOM05D000998 ORTHO05D000806 5.0e-11 72.4 45 80.0
Sabra10G0099900 Salix brachista HOM05D000998 ORTHO05D000806 5.0e-11 72.4 37 89.2
CSS0008605 Camellia sinensis var. sinensis HOM05D000998 ORTHO05D000806 6.5e-11 72.0 37 89.2
Cc11_g10730 Coffea canephora HOM05D000998 ORTHO05D000806 6.5e-11 72.0 38 89.5
ECA246G3569 Erigeron canadensis HOM05D000998 ORTHO05D000806 6.5e-11 72.0 44 79.5
TWI75G1173 Tripterygium wilfordii HOM05D000998 ORTHO05D000806 6.5e-11 72.0 37 89.2
GSVIVG01011969001 Vitis vinifera HOM05D000998 ORTHO05D000806 6.5e-11 72.0 36 94.4
Duzib251G0535 Durio zibethinus HOM05D000998 ORTHO05D000806 8.5e-11 71.6 38 86.8
Migut.L01103 Erythranthe guttata HOM05D000998 ORTHO05D000806 1.1e-10 71.2 56 67.9
MBI16_g23750_MAGBIO Magnolia biondii HOM05D000998 ORTHO05D000806 1.5e-10 70.9 46 78.3
Manes.06G073500 Manihot esculenta HOM05D000998 ORTHO05D000806 1.5e-10 70.9 45 77.8
Lsat_1_v5_gn_3_58321 Lactuca sativa HOM05D000998 ORTHO05D000806 1.9e-10 70.5 37 86.5
CiPaw.15G002500 Carya illinoinensis HOM05D000998 ORTHO05D000806 2.5e-10 70.1 37 86.5
Glyma.01G089700 Glycine max HOM05D000998 ORTHO05D000806 2.5e-10 70.1 37 83.8
Glyma.02G101300 Glycine max HOM05D000998 ORTHO05D000806 2.5e-10 70.1 37 83.8
CARHR025830 Cardamine hirsuta HOM05D000998 ORTHO05D000806 3.2e-10 69.7 55 65.5
Dinv16517 Davidia involucrata HOM05D000998 ORTHO05D000806 3.2e-10 69.7 37 83.8
Gohir.A12G172100 Gossypium hirsutum HOM05D000998 ORTHO05D000806 3.2e-10 69.7 37 86.5
Potri.008G115200 Populus trichocarpa HOM05D000998 ORTHO05D000806 3.2e-10 69.7 37 83.8
AT1G26100 Arabidopsis thaliana HOM05D000998 ORTHO05D000806 4.2e-10 69.3 45 77.8
Cpa.g.sc1.232 Carica papaya HOM05D000998 ORTHO05D000806 4.2e-10 69.3 37 86.5
Thhalv10008642m.g Eutrema salsugineum HOM05D000998 ORTHO05D000806 4.2e-10 69.3 38 84.2
Lj3A1021T38 Lonicera japonica HOM05D000998 ORTHO05D000806 4.2e-10 69.3 36 86.1
Lj2g0009892 Lotus japonicus HOM05D000998 ORTHO05D000806 4.2e-10 69.3 52 63.5
PSO063G0314 Papaver somniferum HOM05D000998 ORTHO05D000806 4.2e-10 69.3 38 81.6
Medtr5g053250 Medicago truncatula HOM05D000998 ORTHO05D000806 5.5e-10 68.9 37 83.8
PSO782G0988 Papaver somniferum HOM05D000998 ORTHO05D000806 5.5e-10 68.9 38 81.6
Phvul.003G025900 Phaseolus vulgaris HOM05D000998 ORTHO05D000806 5.5e-10 68.9 35 85.7
TPR.G2698 Trifolium pratense HOM05D000998 ORTHO05D000806 5.5e-10 68.9 37 83.8
TAR629G0689 Trochodendron aralioides HOM05D000998 ORTHO05D000806 5.5e-10 68.9 37 86.5
VMungo1215G2646 Vigna mungo HOM05D000998 ORTHO05D000806 5.5e-10 68.9 35 88.6
Actinidia14843 Actinidia chinensis HOM05D000998 ORTHO05D000806 7.2e-10 68.6 35 85.7
AL1G39680 Arabidopsis lyrata HOM05D000998 ORTHO05D000806 7.2e-10 68.6 45 75.6
EL10Ac6g14518 Beta vulgaris HOM05D000998 ORTHO05D000806 7.2e-10 68.6 44 77.3
C03p72730 Brassica napus HOM05D000998 ORTHO05D000806 7.2e-10 68.6 55 65.5
BolC3t19571H Brassica oleracea HOM05D000998 ORTHO05D000806 7.2e-10 68.6 55 65.5
BraA08t34658Z Brassica rapa HOM05D000998 ORTHO05D000806 7.2e-10 68.6 55 65.5
vmacro10521 Vaccinium macrocarpon HOM05D000998 ORTHO05D000806 7.2e-10 68.6 37 83.8
BcaB03g12084 Brassica carinata HOM05D000998 ORTHO05D000806 9.4e-10 68.2 55 63.6
A08p27130 Brassica napus HOM05D000998 ORTHO05D000806 9.4e-10 68.2 55 65.5
Aa31LG7G8900 Aethionema arabicum HOM05D000998 ORTHO05D000806 1.2e-09 67.8 46 73.9
Ah.02g127230 Amaranthus hybridus HOM05D000998 ORTHO05D000806 1.2e-09 67.8 42 78.6
Sp1g22590 Schrenkiella parvula HOM05D000998 ORTHO05D000806 1.2e-09 67.8 38 81.6
Hund05773 Selenicereus undatus HOM05D000998 ORTHO05D000806 1.2e-09 67.8 37 83.8
Lalb_Chr17g0341851 Lupinus albus HOM05D000998 ORTHO05D000806 1.6e-09 67.4 52 61.5
ClCG05G023100 Citrullus lanatus HOM05D000998 ORTHO05D000806 2.1e-09 67.0 46 73.9
Sc14g0007570 Simmondsia chinensis HOM05D000998 ORTHO05D000806 2.7e-09 66.6 44 77.3
Sabra08G0087100 Salix brachista HOM05D000998 ORTHO05D000806 3.6e-09 66.2 37 81.1
Sed0026262 Sechium edule HOM05D000998 ORTHO05D000806 3.6e-09 66.2 46 71.7
Carub.0001s2487 Capsella rubella HOM05D000998 ORTHO05D000806 6.1e-09 65.5 45 73.3
CsaV3_5G033890 Cucumis sativus L. HOM05D000998 ORTHO05D000806 6.1e-09 65.5 46 71.7
Psat5g007560 Pisum sativum HOM05D000998 ORTHO05D000806 1.4e-08 64.3 37 81.1
SEGI_33612 Sequoiadendron giganteum HOM05D000998 ORTHO05D000806 1.4e-08 64.3 35 85.7
ATR0598G209 Amborella trichopoda HOM05D000998 ORTHO05D000806 2.3e-08 63.5 43 67.4
PSO541G2542 Papaver somniferum HOM05D000998 ORTHO05D000806 4.0e-08 62.8 38 78.9
PSO675G5724 Papaver somniferum HOM05D000998 ORTHO05D000806 4.0e-08 62.8 38 78.9
Thecc.04G139100 Theobroma cacao HOM05D000998 ORTHO05D000806 6.7e-08 62.0 42 66.7
C07p18870 Brassica napus HOM05D000709 ORTHO05D002401 8.8e-08 61.6 53 64.2
A07p12680 Brassica napus HOM05D000709 ORTHO05D002401 1.1e-07 61.2 38 76.3
BraA07t29046Z Brassica rapa HOM05D001835 ORTHO05D001899 1.1e-07 61.2 38 76.3
BcaB03g14053 Brassica carinata HOM05D000998 ORTHO05D000806 1.5e-07 60.8 38 76.3
Ca_27616_v3 Cicer arietinum L. HOM05D000998 ORTHO05D000806 1.5e-07 60.8 30 90.0
Gohir.A07G072700 Gossypium hirsutum HOM05D000998 ORTHO05D000806 1.5e-07 60.8 43 65.1
Gohir.D07G077200 Gossypium hirsutum HOM05D000998 ORTHO05D000806 1.5e-07 60.8 43 65.1
Gorai.001G081800 Gossypium raimondii HOM05D000998 ORTHO05D000806 1.5e-07 60.8 43 65.1
SEGI_27386 Sequoiadendron giganteum HOM05D000998 ORTHO05D000806 1.5e-07 60.8 33 84.8
BcaC06g35187 Brassica carinata HOM05D000998 ORTHO05D000806 2.6e-07 60.1 53 62.3
BolC7t42398H Brassica oleracea HOM05D000998 ORTHO05D000806 2.6e-07 60.1 53 62.3
CANSAT64G0428 Cannabis sativa HOM05D000998 ORTHO05D000806 4.4e-07 59.3 37 75.7
arahy.Tifrunner.gnm1.ann1.63EJDF Arachis hypogaea HOM05D000998 ORTHO05D000806 5.7e-07 58.9 47 57.4
arahy.Tifrunner.gnm1.ann1.Y6M3VX Arachis hypogaea HOM05D000998 ORTHO05D000806 5.7e-07 58.9 47 57.4
Duzib138G1166 Durio zibethinus HOM05D000998 ORTHO05D000806 5.7e-07 58.9 43 62.8
QL01p001005 Quercus lobata HOM05D000998 ORTHO05D000806 7.5e-07 58.5 42 61.9
Sed0002693 Sechium edule HOM05D000998 ORTHO05D000806 7.5e-07 58.5 47 59.6
Atru.chr8.802 Acer truncatum HOM05D000998 ORTHO05D000806 9.7e-07 58.2 43 60.5
Ciclev10012646m.g Citrus clementina HOM05D000998 ORTHO05D000806 9.7e-07 58.2 42 64.3
COL.COLO4_16200 Corchorus olitorius HOM05D000998 ORTHO05D000806 9.7e-07 58.2 42 61.9
TAR629G2903 Trochodendron aralioides HOM05D000998 ORTHO05D000806 1.3e-06 57.8 42 59.5
Aqoxy3G03887 Aquilegia oxysepala HOM05D000998 ORTHO05D000806 1.7e-06 57.4 47 55.3
CANSAT64G1697 Cannabis sativa HOM05D000998 ORTHO05D000806 1.7e-06 57.4 43 58.1
Lj4A131T28 Lonicera japonica HOM05D000998 ORTHO05D000806 1.7e-06 57.4 43 60.5
Lj2g0014622 Lotus japonicus HOM05D000998 ORTHO05D000806 1.7e-06 57.4 47 55.3
SMO340G0028 Selaginella moellendorffii HOM05D000998 ORTHO05D000806 1.7e-06 57.4 36 69.4
Migut.H00531 Erythranthe guttata HOM05D000998 ORTHO05D000806 2.2e-06 57.0 47 53.2
Thhalv10027908m.g Eutrema salsugineum HOM05D000998 ORTHO05D000806 2.2e-06 57.0 43 58.1
MD09G1083000 Malus domestica HOM05D000998 ORTHO05D000806 2.2e-06 57.0 43 58.1
MD17G1073300 Malus domestica HOM05D000998 ORTHO05D000806 2.2e-06 57.0 43 58.1
Prupe.3G240600 Prunus persica HOM05D000998 ORTHO05D000806 2.2e-06 57.0 43 58.1
PGR004G1914 Punica granatum HOM05D000998 ORTHO05D000806 2.2e-06 57.0 36 72.2
PGR042G2450 Punica granatum HOM05D000998 ORTHO05D000806 2.2e-06 57.0 43 62.8
Sc10g0001350 Simmondsia chinensis HOM05D000998 ORTHO05D000806 2.2e-06 57.0 43 60.5
Aqoxy3G00379 Aquilegia oxysepala HOM05D000998 ORTHO05D000806 2.8e-06 56.6 43 55.8
Lalb_Chr21g0317961 Lupinus albus HOM05D000998 ORTHO05D000806 2.8e-06 56.6 47 55.3
Hund16115 Selenicereus undatus HOM05D000998 ORTHO05D000806 2.8e-06 56.6 47 55.3
TPR.G25083 Trifolium pratense HOM05D000998 ORTHO05D000806 2.8e-06 56.6 47 53.2
TAR371G0667 Trochodendron aralioides HOM05D000998 ORTHO05D000806 2.8e-06 56.6 37 67.6
CDE06G2025 Ceratophyllum demersum HOM05D000998 ORTHO05D000806 3.7e-06 56.2 42 61.9
CsaV3_5G039070 Cucumis sativus L. HOM05D000998 ORTHO05D000806 3.7e-06 56.2 47 55.3
MBI10_g08561_MAGBIO Magnolia biondii HOM05D000998 ORTHO05D000806 3.7e-06 56.2 42 61.9
MBI10_g35506_MAGBIO Magnolia biondii HOM05D000998 ORTHO05D000806 3.7e-06 56.2 35 71.4
Nn3g17688 Nelumbo nucifera HOM05D000998 ORTHO05D000806 3.7e-06 56.2 43 60.5
Potri.004G103800 Populus trichocarpa HOM05D000998 ORTHO05D000806 3.7e-06 56.2 36 69.4
Aa31LG9G16980 Aethionema arabicum HOM05D000998 ORTHO05D000806 4.8e-06 55.8 43 58.1
Carub.0007s3723 Capsella rubella HOM05D000998 ORTHO05D000806 4.8e-06 55.8 43 55.8
Cfa007955 Carpinus fangiana HOM05D000998 ORTHO05D000806 4.8e-06 55.8 43 58.1
CDE07G1506 Ceratophyllum demersum HOM05D000998 ORTHO05D000806 4.8e-06 55.8 42 59.5
ClCG11G005300 Citrullus lanatus HOM05D000998 ORTHO05D000806 4.8e-06 55.8 47 55.3
Haze_14114 Corylus avellana HOM05D000998 ORTHO05D000806 4.8e-06 55.8 43 58.1
Haze_14120 Corylus avellana HOM05D000998 ORTHO05D000806 4.8e-06 55.8 43 58.1
Hma1.2p1_0136F.1_g062060 Hydrangea macrophylla HOM05D000998 ORTHO05D000806 4.8e-06 55.8 42 59.5
Peaxi162Scf00019g01111 Petunia axillaris HOM05D000998 ORTHO05D000806 4.8e-06 55.8 43 58.1
Phvul.004G072300 Phaseolus vulgaris HOM05D000998 ORTHO05D000806 4.8e-06 55.8 46 56.5
SalBow1G4849 Salvia bowleyana HOM05D004522 ORTHO05D005887 4.8e-06 55.8 46 58.7
HPP92_020264 Vanilla planifolia HOM05D000998 ORTHO05D000806 4.8e-06 55.8 37 75.7
MSTRG.2941 Avicennia marina HOM05D000998 ORTHO05D000806 6.3e-06 55.5 43 55.8
Cpa.g.sc818.1 Carica papaya HOM05D000998 ORTHO05D000806 6.3e-06 55.5 43 58.1
MELO3C022085.2 Cucumis melo HOM05D000998 ORTHO05D000806 6.3e-06 55.5 47 55.3
Manes.01G107700 Manihot esculenta HOM05D000998 ORTHO05D000806 6.3e-06 55.5 42 61.9
Sabra08G0087200 Salix brachista HOM05D000998 ORTHO05D000806 6.3e-06 55.5 36 66.7
TWI77G0078 Tripterygium wilfordii HOM05D000998 ORTHO05D000806 6.3e-06 55.5 43 58.1
Actinidia18120 Actinidia chinensis HOM05D000998 ORTHO05D000806 8.2e-06 55.1 43 55.8
Actinidia36306 Actinidia chinensis HOM05D000998 ORTHO05D000806 8.2e-06 55.1 43 58.1
MSTRG.23824 Avicennia marina HOM05D000998 ORTHO05D000806 8.2e-06 55.1 47 57.4
CSS0050401 Camellia sinensis var. sinensis HOM05D000998 ORTHO05D000806 8.2e-06 55.1 47 55.3
CAN.G93.34 Capsicum annuum HOM05D000998 ORTHO05D000806 8.2e-06 55.1 43 58.1
Dinv33925 Davidia involucrata HOM05D000998 ORTHO05D000806 8.2e-06 55.1 36 66.7
Dinv34856 Davidia involucrata HOM05D000998 ORTHO05D000806 8.2e-06 55.1 42 59.5
Lj7A9T87 Lonicera japonica HOM05D000998 ORTHO05D000806 8.2e-06 55.1 37 64.9
Medtr6g017105 Medicago truncatula HOM05D000998 ORTHO05D000806 8.2e-06 55.1 47 53.2
Potri.008G115300 Populus trichocarpa HOM05D000998 ORTHO05D000806 8.2e-06 55.1 36 66.7
Potri.017G111700 Populus trichocarpa HOM05D000998 ORTHO05D000806 8.2e-06 55.1 43 58.1
Sp7g03290 Schrenkiella parvula HOM05D000998 ORTHO05D000806 8.2e-06 55.1 43 55.8
Solyc02g065580.3 Solanum lycopersicum HOM05D000998 ORTHO05D000806 8.2e-06 55.1 43 58.1
Sopen02g015770 Solanum pennellii HOM05D000998 ORTHO05D000806 8.2e-06 55.1 43 58.1


User provided reference genes

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