Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07867 Striga asiatica HOM05D002646 ORTHO05D002782 1.3e-94 349.7 176 100.0
SGA_v2.0_scaffold48G17914 Striga asiatica HOM05D002646 ORTHO05D002782 1.2e-89 333.2 176 94.3
SGA_v2.0_scaffold63G21638 Striga asiatica HOM05D002646 ORTHO05D002782 6.8e-56 221.1 124 86.3
MSTRG.13432 Avicennia marina HOM05D002646 ORTHO05D002782 7.6e-31 137.9 136 52.9
Migut.E00070 Erythranthe guttata HOM05D002646 ORTHO05D002782 4.6e-28 128.6 150 49.3
Lj9A571T76 Lonicera japonica HOM05D002646 ORTHO05D002782 5.6e-26 121.7 83 68.7
Cc02_g36600 Coffea canephora HOM05D002646 ORTHO05D002782 7.6e-23 111.3 118 47.5
Rhsim08G0118000 Rhododendron simsii HOM05D002646 ORTHO05D002782 8.4e-22 107.8 92 56.5
RhsimUnG0099800 Rhododendron simsii HOM05D002646 ORTHO05D002782 8.4e-22 107.8 92 56.5
TAR374G0079 Trochodendron aralioides HOM05D002646 ORTHO05D002782 1.1e-21 107.5 104 53.8
Nitab4.5_0000457g0400 Nicotiana tabacum HOM05D002646 ORTHO05D002782 5.4e-21 105.1 90 56.7
Peaxi162Scf00021g01520 Petunia axillaris HOM05D002646 ORTHO05D002782 5.4e-21 105.1 90 54.4
Sabra14G0050200 Salix brachista HOM05D002646 ORTHO05D002782 5.4e-21 105.1 88 56.8
Lalb_Chr03g0039441 Lupinus albus HOM05D002646 ORTHO05D002782 9.3e-21 104.4 96 54.2
Hund22797 Selenicereus undatus HOM05D002646 ORTHO05D002782 9.3e-21 104.4 117 45.3
PGSC0003DMG400012755 Solanum tuberosum HOM05D002646 ORTHO05D002782 9.3e-21 104.4 100 51.0
Nitab4.5_0002993g0040 Nicotiana tabacum HOM05D002646 ORTHO05D002782 1.2e-20 104.0 90 54.4
Haze_16825 Corylus avellana HOM05D002646 ORTHO05D002782 2.1e-20 103.2 89 56.2
Dinv29528 Davidia involucrata HOM05D002646 ORTHO05D002782 2.1e-20 103.2 91 52.7
ClCG05G002180 Citrullus lanatus HOM05D002646 ORTHO05D002782 3.5e-20 102.4 94 51.1
Sopen01g037190 Solanum pennellii HOM05D002646 ORTHO05D002782 3.5e-20 102.4 106 48.1
Actinidia12264 Actinidia chinensis HOM05D002646 ORTHO05D002782 4.6e-20 102.1 92 53.3
CAN.G388.3 Capsicum annuum HOM05D002646 ORTHO05D002782 4.6e-20 102.1 83 56.6
Lj1g0023852 Lotus japonicus HOM05D002646 ORTHO05D002782 4.6e-20 102.1 80 60.0
Potri.014G070500 Populus trichocarpa HOM05D002646 ORTHO05D002782 4.6e-20 102.1 88 55.7
Solyc01g091450.3 Solanum lycopersicum HOM05D002646 ORTHO05D002782 4.6e-20 102.1 90 53.3
vmacro13392 Vaccinium macrocarpon HOM05D002646 ORTHO05D002782 6.0e-20 101.7 81 58.0
unitig_8.g3957 Utricularia gibba HOM05D002646 ORTHO05D002782 7.8e-20 101.3 88 59.1
Manes.01G265200 Manihot esculenta HOM05D002646 ORTHO05D002782 1.0e-19 100.9 88 53.4
THA.LOC104817013 Tarenaya hassleriana HOM05D002646 ORTHO05D002782 1.0e-19 100.9 80 57.5
Atru.chr5.320 Acer truncatum HOM05D002646 ORTHO05D002782 1.7e-19 100.1 99 49.5
Gohir.A08G133800 Gossypium hirsutum HOM05D002646 ORTHO05D002782 1.7e-19 100.1 77 57.1
GSVIVG01027622001 Vitis vinifera HOM05D002646 ORTHO05D002782 1.7e-19 100.1 77 58.4
Duzib268G1615 Durio zibethinus HOM05D002646 ORTHO05D002782 2.3e-19 99.8 118 42.4
arahy.Tifrunner.gnm1.ann1.HKT7FP Arachis hypogaea HOM05D002646 ORTHO05D002782 3.0e-19 99.4 76 59.2
Duzib268G0058 Durio zibethinus HOM05D002646 ORTHO05D002782 3.0e-19 99.4 118 43.2
Glyma.09G268500 Glycine max HOM05D002646 ORTHO05D002782 3.0e-19 99.4 80 56.2
Thecc.01G375100 Theobroma cacao HOM05D002646 ORTHO05D002782 3.0e-19 99.4 77 58.4
Ciclev10020287m.g Citrus clementina HOM05D002646 ORTHO05D002782 3.9e-19 99.0 77 55.8
Duzib268G0077 Durio zibethinus HOM05D002646 ORTHO05D002782 3.9e-19 99.0 118 43.2
Psat3g115520 Pisum sativum HOM05D002646 ORTHO05D002782 5.1e-19 98.6 79 57.0
arahy.Tifrunner.gnm1.ann1.7IJL1I Arachis hypogaea HOM05D002646 ORTHO05D002782 6.6e-19 98.2 76 57.9
Ah.13g074290 Amaranthus hybridus HOM05D002646 ORTHO05D002782 8.7e-19 97.8 80 55.0
Gohir.D08G155000 Gossypium hirsutum HOM05D002646 ORTHO05D002782 8.7e-19 97.8 77 55.8
Gorai.004G161000 Gossypium raimondii HOM05D002646 ORTHO05D002782 8.7e-19 97.8 77 55.8
Eucgr.G00320 Eucalyptus grandis HOM05D002646 ORTHO05D002782 1.1e-18 97.4 86 53.5
CANSAT11G0871 Cannabis sativa HOM05D002646 ORTHO05D002782 1.5e-18 97.1 91 51.6
Ca_07824_v3 Cicer arietinum L. HOM05D002646 ORTHO05D002782 1.5e-18 97.1 80 55.0
MELO3C006182.2 Cucumis melo HOM05D002646 ORTHO05D002782 1.5e-18 97.1 92 51.1
Glyma.18G221100 Glycine max HOM05D002646 ORTHO05D002782 1.5e-18 97.1 80 53.8
Nn4g26422 Nelumbo nucifera HOM05D002646 ORTHO05D002782 2.5e-18 96.3 81 54.3
TPR.G26954 Trifolium pratense HOM05D002646 ORTHO05D002782 2.5e-18 96.3 80 55.0
Ah.13g069210 Amaranthus hybridus HOM05D002646 ORTHO05D002782 3.3e-18 95.9 73 60.3
COL.COLO4_12558 Corchorus olitorius HOM05D002646 ORTHO05D002782 7.3e-18 94.7 77 55.8
Medtr7g075010 Medicago truncatula HOM05D002646 ORTHO05D002782 7.3e-18 94.7 80 53.8
Prupe.2G146700 Prunus persica HOM05D002646 ORTHO05D002782 7.3e-18 94.7 86 51.2
EL10Ac2g03761 Beta vulgaris HOM05D002646 ORTHO05D002782 9.6e-18 94.4 74 58.1
CsaV3_3G009620 Cucumis sativus L. HOM05D002646 ORTHO05D002782 1.6e-17 93.6 92 48.9
PGR042G3460 Punica granatum HOM05D002646 ORTHO05D002782 1.6e-17 93.6 86 53.5
Thhalv10007755m.g Eutrema salsugineum HOM05D002646 ORTHO05D002782 2.1e-17 93.2 80 55.0
Sed0003475 Sechium edule HOM05D002646 ORTHO05D002782 2.1e-17 93.2 96 45.8
Phvul.008G083500 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 2.8e-17 92.8 79 54.4
QL12p017558 Quercus lobata HOM05D002646 ORTHO05D002782 4.8e-17 92.0 100 42.0
Ah.13g069980 Amaranthus hybridus HOM05D002646 ORTHO05D002782 6.2e-17 91.7 73 58.9
CSS0036552 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 6.2e-17 91.7 77 53.2
HPP92_001656 Vanilla planifolia HOM05D002646 ORTHO05D002782 6.2e-17 91.7 75 56.0
CSS0029682 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 8.1e-17 91.3 77 53.2
CDE11G0049 Ceratophyllum demersum HOM05D002646 ORTHO05D002782 8.1e-17 91.3 96 45.8
RcHm_v2.0_Chr1g0350721 Rosa chinensis HOM05D002646 ORTHO05D002782 8.1e-17 91.3 102 44.1
HanXRQChr04g0122351 Helianthus annuus HOM05D002646 ORTHO05D002782 1.1e-16 90.9 115 40.9
Phvul.008G076800 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 1.1e-16 90.9 76 56.6
Carub.0001s0027 Capsella rubella HOM05D002646 ORTHO05D002782 1.4e-16 90.5 80 53.8
ATR0697G028 Amborella trichopoda HOM05D002646 ORTHO05D002782 2.4e-16 89.7 74 51.4
AL1G10350 Arabidopsis lyrata HOM05D002646 ORTHO05D002782 2.4e-16 89.7 123 43.1
DCAR_006871 Daucus carota HOM05D002646 ORTHO05D002782 2.4e-16 89.7 130 37.7
TWI23G1057 Tripterygium wilfordii HOM05D002646 ORTHO05D002782 3.1e-16 89.4 101 44.6
CARHR000380 Cardamine hirsuta HOM05D002646 ORTHO05D002782 4.0e-16 89.0 79 53.2
Lsat_1_v5_gn_7_7441 Lactuca sativa HOM05D002646 ORTHO05D002782 4.0e-16 89.0 91 46.2
MD08G1028000 Malus domestica HOM05D002646 ORTHO05D002782 4.0e-16 89.0 84 47.6
PSO478G1528 Papaver somniferum HOM05D002646 ORTHO05D002782 4.0e-16 89.0 90 47.8
PSO782G0929 Papaver somniferum HOM05D002646 ORTHO05D002782 4.0e-16 89.0 90 47.8
Aa31LG1G11300 Aethionema arabicum HOM05D002646 ORTHO05D002782 5.3e-16 88.6 80 50.0
FAN03G1830 Fragaria x ananassa HOM05D002646 ORTHO05D002782 6.9e-16 88.2 86 46.5
Sc19g0004610 Simmondsia chinensis HOM05D002646 ORTHO05D002782 6.9e-16 88.2 118 42.4
Sp1g00330 Schrenkiella parvula HOM05D002646 ORTHO05D002782 9.0e-16 87.8 80 51.2
AT1G01970 Arabidopsis thaliana HOM05D002646 ORTHO05D002782 1.2e-15 87.4 80 51.2
Dinv43720 Davidia involucrata HOM05D002646 ORTHO05D002782 1.5e-15 87.0 60 61.7
FAN01G3025 Fragaria x ananassa HOM05D002646 ORTHO05D002782 1.5e-15 87.0 86 45.3
Aqoxy7G00603 Aquilegia oxysepala HOM05D002646 ORTHO05D002782 2.0e-15 86.7 79 53.2
Oeu003485.1 Olea europaea HOM05D002646 ORTHO05D002782 2.6e-15 86.3 58 62.1
FvH4_7g12010 Fragaria vesca HOM05D002646 ORTHO05D002782 3.4e-15 85.9 86 45.3
FAN06G4772 Fragaria x ananassa HOM05D002646 ORTHO05D002782 3.4e-15 85.9 86 45.3
FAN10G1248 Fragaria x ananassa HOM05D002646 ORTHO05D002782 3.4e-15 85.9 86 45.3
FAN10G4284 Fragaria x ananassa HOM05D002646 ORTHO05D002782 3.4e-15 85.9 86 45.3
MBI04_g32239_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 3.4e-15 85.9 96 43.8
A10p00160 Brassica napus HOM05D002646 ORTHO05D002782 1.1e-13 80.9 94 45.7
BraA10t42295Z Brassica rapa HOM05D002646 ORTHO05D002782 1.1e-13 80.9 94 45.7
BcaB03g13627 Brassica carinata HOM05D002646 ORTHO05D002782 1.9e-13 80.1 79 50.6
CiPaw.01G261200 Carya illinoinensis HOM05D002646 ORTHO05D002782 3.2e-13 79.3 60 56.7
BcaNung05290 Brassica carinata HOM05D002646 ORTHO05D002782 5.4e-13 78.6 154 33.1
BolC5t28806H Brassica oleracea HOM05D002646 ORTHO05D002782 5.4e-13 78.6 154 33.1
AUR62030050 Chenopodium quinoa HOM05D002646 ORTHO05D002782 5.4e-13 78.6 60 56.7
C05p00160 Brassica napus HOM05D002646 ORTHO05D002782 9.3e-13 77.8 129 35.7
Zm00001eb329950 Zea mays HOM05D002646 ORTHO05D002782 1.2e-12 77.4 96 39.6
AUR62002634 Chenopodium quinoa HOM05D002646 ORTHO05D002782 2.1e-12 76.6 60 55.0
Ah.12g056930 Amaranthus hybridus HOM05D002646 ORTHO05D002782 3.5e-12 75.9 55 65.5
SEGI_14547 Sequoiadendron giganteum HOM05D007858 ORTHO05D002782 1.1e-10 70.9 98 37.8
Actinidia31415 Actinidia chinensis HOM05D002646 ORTHO05D002782 2.5e-10 69.7 60 50.0
Os07g0661900 Oryza sativa ssp. japonica HOM05D002646 ORTHO05D002782 3.7e-09 65.9 99 35.4


User provided reference genes

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