Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 2265.7 1183 100.0
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 0.0e+00 1581.6 1081 76.8
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 0.0e+00 1500.3 1010 77.1
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 0.0e+00 1487.2 1083 71.6
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 0.0e+00 1473.0 1129 69.3
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 0.0e+00 1386.7 1083 66.2
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 0.0e+00 1379.8 1083 65.8
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 0.0e+00 1359.7 1082 65.2
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 0.0e+00 1357.4 1082 65.0
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 0.0e+00 1356.3 1081 64.8
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 0.0e+00 1355.5 1083 65.3
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1342.8 1082 65.7
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 0.0e+00 1338.9 1084 64.6
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 0.0e+00 1333.9 1096 64.9
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1320.4 1083 64.2
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 0.0e+00 1320.4 1081 63.1
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 0.0e+00 1318.1 1040 66.9
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 0.0e+00 1316.6 1084 63.2
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 0.0e+00 1309.7 1079 64.1
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 0.0e+00 1305.8 1081 62.8
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 0.0e+00 1305.0 1082 62.0
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 0.0e+00 1302.3 1080 62.8
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1301.6 1081 61.9
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1298.1 1082 62.3
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 0.0e+00 1295.8 1083 62.8
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 0.0e+00 1295.4 1085 63.7
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 0.0e+00 1292.7 1166 59.4
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 0.0e+00 1292.3 1085 62.6
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 0.0e+00 1286.9 1082 61.9
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1284.2 1080 62.2
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 0.0e+00 1284.2 1080 62.2
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 0.0e+00 1281.9 1080 61.9
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 0.0e+00 1281.2 1081 62.6
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 0.0e+00 1278.1 1082 61.7
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 0.0e+00 1274.2 940 70.5
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 0.0e+00 1265.4 1086 61.8
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1262.7 1082 60.4
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 0.0e+00 1262.7 1091 61.0
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1253.0 1079 60.5
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1253.0 1082 61.2
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 0.0e+00 1252.7 1031 64.0
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 0.0e+00 1252.3 1082 61.0
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 0.0e+00 1251.9 1081 60.4
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 0.0e+00 1250.0 1080 60.7
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 0.0e+00 1246.1 1084 60.0
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 0.0e+00 1233.4 1082 60.6
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 0.0e+00 1231.5 1079 60.2
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 0.0e+00 1230.7 1084 59.8
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1229.2 1075 59.8
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 0.0e+00 1228.4 1078 59.9
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1226.8 1085 60.2
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 0.0e+00 1225.7 1085 60.0
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 0.0e+00 1220.7 1083 59.6
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 0.0e+00 1220.7 1050 61.7
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1218.4 1098 58.7
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 0.0e+00 1211.4 1081 58.6
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 0.0e+00 1211.4 1082 59.9
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 0.0e+00 1204.9 1083 57.7
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 0.0e+00 1201.8 1084 57.7
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1200.7 1084 58.3
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 0.0e+00 1199.5 1084 58.8
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 0.0e+00 1198.3 1112 58.0
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1192.9 1083 57.3
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 0.0e+00 1192.9 1081 57.6
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 0.0e+00 1190.3 1083 56.8
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 0.0e+00 1185.2 1082 58.4
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 0.0e+00 1185.2 1079 58.4
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 0.0e+00 1183.7 1083 56.8
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 0.0e+00 1179.5 1056 59.5
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 0.0e+00 1176.0 1077 57.8
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1171.4 1063 58.7
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1170.6 1116 55.5
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 0.0e+00 1167.9 1083 56.0
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 0.0e+00 1158.3 1082 56.7
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 0.0e+00 1157.9 1084 56.7
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 0.0e+00 1154.0 1082 55.8
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 0.0e+00 1150.2 1081 55.8
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 0.0e+00 1143.3 1157 54.8
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 0.0e+00 1134.4 1049 57.5
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 0.0e+00 1121.7 1102 55.8
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 0.0e+00 1117.8 1089 55.8
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 0.0e+00 1100.5 957 60.1
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 0.0e+00 1091.6 1091 54.0
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 0.0e+00 1083.2 1068 55.7
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 2.0e-308 1062.8 1082 52.2
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 9.1e-306 1053.9 937 57.6
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 5.0e-304 1048.1 948 57.6
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 1.2e-300 1036.9 1113 51.4
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 8.1e-262 907.9 1100 46.2
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 3.1e-261 906.0 821 59.6
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 3.2e-234 816.2 779 57.0
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 3.9e-232 809.3 967 46.3
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 3.0e-216 756.5 762 53.1
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 2.6e-215 753.4 632 67.4
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 8.2e-214 748.4 638 66.3
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 4.2e-210 736.1 667 57.3
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 4.1e-205 719.5 1094 37.3
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 2.5e-202 710.3 1104 37.7
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 8.5e-195 685.3 1064 44.7
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 3.1e-189 666.8 645 55.8
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 2.7e-188 663.7 643 55.8
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 1.9e-186 657.5 708 48.2
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 9.0e-144 515.8 1047 33.0
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 4.3e-138 496.9 420 62.6
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 2.0e-135 488.0 448 54.0
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 5.8e-135 486.5 448 53.8
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 4.3e-122 443.7 991 30.7
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 2.3e-115 421.4 377 62.6
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 3.8e-110 404.1 426 53.1
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 4.0e-91 340.9 452 46.0
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 3.1e-88 331.3 296 55.4
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 8.8e-83 313.2 1023 25.8
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 1.2e-76 292.7 233 62.7
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.2e-74 286.2 376 45.2
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 7.3e-69 266.9 346 52.3
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 3.0e-62 245.0 358 40.8
SGA_v2.0_scaffold32G13101 Striga asiatica HOM05D001046 ORTHO05D005883 3.9e-62 244.6 224 65.6
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 4.1e-56 224.6 935 25.8
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 5.8e-50 204.1 197 57.4
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 2.4e-48 198.7 137 68.6
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 4.7e-44 184.5 134 66.4
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 8.1e-44 183.7 187 50.8
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 9.0e-35 153.7 108 74.1
Lju470A13T26 Lonicera japonica HOM05D001046 ORTHO05D005883 5.6e-29 134.4 140 50.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.2e-25 122.5 306 36.3
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 3.8e-25 121.7 92 62.0
QL03p044436 Quercus lobata HOM05D001046 ORTHO05D000006 1.1e-24 120.2 96 58.3
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 7.9e-23 114.0 136 48.5
Psat5g215000 Pisum sativum HOM05D001046 ORTHO05D015028 2.1e-15 89.4 78 55.1
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 3.5e-15 88.6 68 58.8
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 7.9e-15 87.4 77 61.0
PGSC0003DMG400025125 Solanum tuberosum HOM05D001046 ORTHO05D005883 7.9e-15 87.4 76 61.8
Sabra10G0102000 Salix brachista HOM05D001046 ORTHO05D005883 1.0e-14 87.0 73 60.3
Lju470A14T37 Lonicera japonica HOM05D001046 ORTHO05D005883 4.3e-13 81.6 99 42.4
MBI15_g18372_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 9.6e-13 80.5 72 51.4
MELO3C034612.2 Cucumis melo HOM05D001046 ORTHO05D005883 1.6e-12 79.7 104 42.3
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.8e-12 79.0 87 48.3
Gohir.A13G103301 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.8e-12 79.0 59 59.3
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 6.2e-12 77.8 71 53.5
TPR.G36091 Trifolium pratense HOM05D001046 ORTHO05D005883 6.2e-12 77.8 140 38.6
Psat0s3411g0120 Pisum sativum HOM05D001046 ORTHO05D015028 1.1e-11 77.0 75 52.0
Gohir.A06G118000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 5.3e-11 74.7 56 60.7
Psat1g050560 Pisum sativum HOM05D001046 ORTHO05D050390 2.0e-10 72.8 50 68.0
Lju470A13T24 Lonicera japonica HOM05D001046 ORTHO05D005883 8.4e-09 67.4 138 37.0
Glyma.18G282800 Glycine max HOM05D002786 ORTHO05D003493 1.9e-08 66.2 641 21.1
CsaV3_3G044730 Cucumis sativus L. HOM05D001046 ORTHO05D005883 4.2e-08 65.1 40 70.0
CDE04G0426 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 5.5e-08 64.7 76 46.1
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 1.6e-07 63.2 187 26.7
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 6.0e-07 61.2 177 26.0
Lj2g0010388 Lotus japonicus HOM05D001046 ORTHO05D005883 7.9e-07 60.8 54 63.0
Lalb_Chr04g0255061 Lupinus albus HOM05D001046 ORTHO05D005883 1.3e-06 60.1 36 75.0
QL03p044430 Quercus lobata HOM05D001046 ORTHO05D005883 1.3e-06 60.1 37 70.3
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 3.9e-06 58.5 180 26.7
Lalb_Chr07g0186561 Lupinus albus HOM05D000846 ORTHO05D001340 5.1e-06 58.2 151 31.1
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 6.7e-06 57.8 182 26.4
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 6.7e-06 57.8 187 25.1


User provided reference genes

Program Settings